G5449


Basic Information

Item Value
gene id G5449
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17399905 ~ 17448034 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU7384
tctctctctctctctctctctctctcgaGATCAGGTAGAATACGTGACAGGAATATGTCTGATAGATGGATAGCTCTGTGAAGCAGCACTCTGGTCAAAGTGAAAGATAGGAAACATAGATAGCGAGATTATTTTACAGCTAAGTAGAATTCAGTGAGTACAGATGAAGTAATTCATATTGAATCCTATTCCCCGGAAAAGAAAGATATCACCCAGAAAACGAACAGAGTTTAgacccctgtctgtctgtccctaaCTACATGTAGGTCTCAAAGTCTGAATAATCGTGCCACCCACAGTCAGTTCCATGTACTGCATGTGCAATGTGTGcaagtgtaaatgtgtgagtctgtgttggtctgtctgtcggtcAAGCTATCGGTTACTCTTGAGTTTAAGAATCCTATTCAAATCTCAACTGTCCCTGTCCTTTTCAGTAATAACAGACCTTTCTGTCGCTCTTTTTCCCTGCCTTGTTACTGATTTCCCACCCTCTCTTTCCCTGAAATCTCTCTACTggtctctctccctgcctccctctttcCCAACATGTCTATCCCTCCGTCTCTTCTTCATGTTCCTCTCTTTGTCCCTCTCTATCTGTCCCTACCAGTTAGTTTTTCTGTGTCGGGTCCCTGCCTAGTTAATCTAGAGGCGTCCCTCTGTCCCACCCTCCCACCCGCCCACCCTCCCTCTATGGACAAACACATAGGGCGTGGGGGCCGTCCGTCAGGGGGAGCGGCCAATAGcgtccctctccctccccccagATCAGGGCAGTGCAATACACAGATG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7384 True 795 lncRNA 0.38 2 17399905 17448034

Neighbor

gene id symbol gene type direction distance location
rfx1b NA coding downstream 14874 17369504 ~ 17385031 (-)
si:ch211-196h16.12 LOC101466180,LOC100708390,LOC102193965,LOC103356221,LOC103465598 coding downstream 61287 17334937 ~ 17338618 (-)
LOC120569451 NA coding downstream 108432 17286966 ~ 17291473 (-)
LOC120559819 NA coding downstream 143458 17246549 ~ 17256447 (-)
sgsh sgsh coding downstream 238749 17155731 ~ 17161156 (-)
pkd1a pkd1 coding upstream 10740 17458774 ~ 17524846 (-)
exosc1 exosc1,LOC107700859 coding upstream 145982 17594016 ~ 17598848 (-)
pgam1b pgam1,pgm,LOC104945324,LOC104927840 coding upstream 154872 17602906 ~ 17606302 (-)
avpi1 NA coding upstream 166119 17614153 ~ 17617081 (-)
crtac1a LOC104945331,LOC103368018 coding upstream 193272 17641306 ~ 17647822 (-)
G5435 LOC104952676 non-coding downstream 48930 17348875 ~ 17350975 (-)
G5430 clg1h19orf53,LOC108236319,LOC103356219,LOC105917105,LOC106917567,LOC102229420,LOC106531096 non-coding downstream 66295 17331757 ~ 17333610 (-)
G5402 NA non-coding downstream 82085 17317276 ~ 17317820 (-)
G5418 NA non-coding downstream 88088 17311570 ~ 17311817 (-)
G5393 NA non-coding downstream 148441 17248985 ~ 17251464 (-)
G5506 NA non-coding upstream 109807 17557841 ~ 17613208 (-)
G5522 NA non-coding upstream 169153 17617187 ~ 17645665 (-)
LOC120560186 NA non-coding upstream 251226 17699260 ~ 17700389 (-)
G5608 NA non-coding upstream 255182 17703216 ~ 17734751 (-)
LOC120560178 NA non-coding upstream 290038 17738072 ~ 17739847 (-)
LOC120558720 NA other downstream 1051983 16345718 ~ 16347922 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 1714266 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 2495676 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 2680803 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 3357395 14018902 ~ 14042510 (-)
LOC120560175 NA other upstream 262605 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 369473 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 387870 17835904 ~ 17848037 (-)
LOC120556582 NA other upstream 431834 17879868 ~ 17881759 (-)
G5930 LOC102307335,LOC101466373 other upstream 1436934 18884968 ~ 18890220 (-)

Expression


Co-expression Network