G5522


Basic Information

Item Value
gene id G5522
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17617187 ~ 17645665 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU7484
ttttgtttttttttTTAGATTGAAAAACTTACATTTATTATTGTGTTAACAAAACGTCCGAAAGGTTCAAATGGCAATTTTAACAGCCGGCAGGCATACATGCTTTAACAAGTGTATAACGATGCTTTAGGTGCTTGTCTATCAGCCACGGGTTTTATAATGGTCCAAGTGGGCAAGTATCCAACCAGAAGGTCCGAGGAGGGCCACAGTCAGCACAGTCAACACGAACATAGAGTCCTGCAGCAGGACAGAGCCATGTCACTTTCAAAATGATTCAGATAAAGCCAGAAAAAAACATAACGAGGCTAATTTGTAAACTTACCGCCGGCCCAATGTTATCTTTAGGTGGCTTGCCACGGATATAACTCGCGTGTTGAATCACCACGCCTGCTCTGGGAGCAAGAGCCTGTCGAGCTCTCAGCAGTCCAGCAAAAGGCCCACTCATGTTTGGTTTTTAAAAGACAAAGGCCTCTATCTGCTTCCGAGACAAGAGAAATGACCGTTGAAGATTTGGGGGGGGGATCCACGCGCGTTTAAAAGGAGCTGTCCTACGACACACCTGTTAATTGATCTGATTTTAATTACGTTGCCTTCAGGCGCaataagaaacaacaacaaaaagcttTGATGAGTTCAGTGTCCACGTCTGAACTTCCAATCGTTATAAAGAAAATTACAGTCATACCTAATTGAATAGTCATTCATTTACATCAACAACCCAGAGAAGATAGGGTTGTTGTGGTGTATATCTTTATTGTGGATGTTAAGTTGTGCCCACACTGCAAACATATTTGCCTTTGGGATAGTAAAGGGCCAGGTACACACAGTATATGGGCATTAGGCCTACTCAAGTAATGTAGGCTACCTTAATGCAGTTCTGAGGTAGGCCTACTTTACTTGAGAATTTTAGATTTTGTGCCACttaatacttctactccactacatttaaaagattttttttttaattcagctCAATTCATTTGACATATAGTTAGTAGTTATTTTGGAAATACATTCTGTTTACTTTGACTTTTACacctgtgtgtgtaatgtaatggaaACCAGATGAGTTGTAGCAGGAGCTTTGGCTCCTCTCTgtcttggatttgttcttgctggttcctgtttgtttttctttt

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase NEURL1-like

GO: NA

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU7484 True 1139 lncRNA 0.40 2 17617187 17645665

Neighbor

gene id symbol gene type direction distance location
avpi1 NA coding downstream 106 17614153 ~ 17617081 (-)
pgam1b pgam1,pgm,LOC104945324,LOC104927840 coding downstream 10885 17602906 ~ 17606302 (-)
exosc1 exosc1,LOC107700859 coding downstream 18339 17594016 ~ 17598848 (-)
pkd1a pkd1 coding downstream 92341 17458774 ~ 17524846 (-)
nthl1 nthl1,LOC102778712 coding downstream 188572 17423593 ~ 17428615 (-)
LOC120569316 LOC104945333,LOC102299380,LOC102207980,LOC101475478 coding upstream 11482 17657147 ~ 17676202 (-)
LOC120562183 tekt4 coding upstream 32005 17677670 ~ 17681784 (-)
LOC120560159 NA coding upstream 47892 17693557 ~ 17754482 (-)
LOC120556506 NA coding upstream 112004 17757669 ~ 17763809 (-)
LOC120560200 NA coding upstream 121258 17766923 ~ 17768175 (-)
G5506 NA non-coding downstream 3979 17557841 ~ 17613208 (-)
G5449 NA non-coding downstream 169153 17399905 ~ 17448034 (-)
G5435 LOC104952676 non-coding downstream 266212 17348875 ~ 17350975 (-)
G5430 clg1h19orf53,LOC108236319,LOC103356219,LOC105917105,LOC106917567,LOC102229420,LOC106531096 non-coding downstream 283577 17331757 ~ 17333610 (-)
G5402 NA non-coding downstream 299367 17317276 ~ 17317820 (-)
LOC120560186 NA non-coding upstream 53595 17699260 ~ 17700389 (-)
G5608 NA non-coding upstream 57551 17703216 ~ 17734751 (-)
LOC120560178 NA non-coding upstream 92407 17738072 ~ 17739847 (-)
G5616 NA non-coding upstream 136115 17781780 ~ 17782013 (-)
G5638 NA non-coding upstream 206999 17852664 ~ 17852981 (-)
LOC120569099 NA other downstream 196089 17412053 ~ 17421098 (-)
LOC120558720 NA other downstream 1269265 16345718 ~ 16347922 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 1931548 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 2712958 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 2898085 14712144 ~ 14719102 (-)
LOC120560175 NA other upstream 64974 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 171842 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 190239 17835904 ~ 17848037 (-)
LOC120556582 NA other upstream 234203 17879868 ~ 17881759 (-)
G5930 LOC102307335,LOC101466373 other upstream 1239303 18884968 ~ 18890220 (-)

Expression


Co-expression Network