LOC120560175


Basic Information

Item Value
gene id LOC120560175
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17710639 ~ 17713898 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU7590
AGGAGTGCAGCAGAGTTAATCCGTGTGTCTGGGTATGAAGGGAGAGAAGTTCAAGTTTCTTGTCCCTATGGAGAGGGTTATGAGTCTTATGAGAAGTACCTGTGCAAGAATGACTGTGGGAGTGATGATGTTCTTATTACGATGACAGAAGCAAAGAAGAACAGATACTCCATCCATGATGACGAACAGAATCGGGTCTTTACTGTGACCATCTCTGATTTGAGGCGTACGGATGCTGGGAAATACTGGTGTGGGGTGACCAGAACTGGAAAGGATCTCTACACTGAAGTCATGCTGGAAGTAGGAAGAGACAGCTGCTGTGATCATTCCACCAAAGTCCAACGTTATGAGGAGAGTTCAGTGTCCTTCAGTTGTCCGTATGAGTCTGAGTACCAGAACAGCCTCAAGTACATCTGCAGAGGAAACCAGCCCTCCACATGTCTGCAGCACGCACTAATCTCCTCTGACAACAAAcaaaagggacagttcacacTTACAGATGACATGGAATCCAGGAAATTCACAGTGACCATTACCAGTTTGACCCAAAACAATTCTGGGTCGTACCTTTGTGGTGTCCATGGAAACACTGGCCTGGATGTTTTCTCTGCTTTTGAGCTAGAAGTCAAAGAGTGGTGCTGTGTGATGTCACACAAACTGAGCGGCTTTGTGGGACGCCCAGTAACTATGCAGTGTCCCTATCCACCACATCACAAGGATAACAGGAAGTTCCTCTGTAAGGGAGATCACCGCAAAAACTGTAAAGACATGATGACGAGTCAAAGCAGGTTCATGCTGCAAGAAGATGTTGCATCCAGGTCTTTCTCAGTGACGATCACAGAGCTGAAAGCAGGGGATGCTGGGACATACTGGTGTGGTTCAGACTCACAGTGGAGTGCTGGTAATTACACCAAGATTCAGCTGTCACTAGACTTTCAGCAGACCAGCACTGTGATGTCTACTATCAATGTGGTTCCTACCTTCACTGTGGTGGAACCTGTCAGATCACAAGCAACACCTATCCCTGGAAA
>XR_005639432.1
CTTTCTCAGTGACGATCACAGAGCTGAAAGCAGGGGATGCTGGGACATACTGGTGTGGTTCAGACTCACAGTGGAGTGCTGGTAATTACACCAAGATTCAGCTGTCACTAGACTTTCAGCAGACCAGCACTGTGATGTCTACTATCAATGTGGTTCCTACCTTCACTGTGGTGGAACCTGTCAGATCACAAGCAACACCTATCCCTGGAAAACAGATc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7590 True 1031 TUCP 0.55 4 17710646 17713898
XR_005639432.1 False 218 lncRNA 0.48 2 17710639 17712188

Neighbor

gene id symbol gene type direction distance location
LOC120562183 tekt4 coding downstream 28855 17677670 ~ 17681784 (-)
LOC120569316 LOC104945333,LOC102299380,LOC102207980,LOC101475478 coding downstream 34437 17657147 ~ 17676202 (-)
crtac1a LOC104945331,LOC103368018 coding downstream 62817 17641306 ~ 17647822 (-)
avpi1 NA coding downstream 93558 17614153 ~ 17617081 (-)
pgam1b pgam1,pgm,LOC104945324,LOC104927840 coding downstream 104337 17602906 ~ 17606302 (-)
LOC120556506 NA coding upstream 43771 17757669 ~ 17763809 (-)
LOC120560200 NA coding upstream 53025 17766923 ~ 17768175 (-)
LOC120560193 NA coding upstream 59386 17773284 ~ 17779277 (-)
LOC120563097 LOC104965080,LOC103373413,LOC102785880,LOC100703819,LOC102203376 coding upstream 68691 17782589 ~ 17788980 (-)
b3gntl1 b3gntl1,LOC105924764 coding upstream 80454 17794352 ~ 17812575 (-)
LOC120560186 NA non-coding downstream 10250 17699260 ~ 17700389 (-)
G5522 NA non-coding downstream 64974 17617187 ~ 17645665 (-)
G5506 NA non-coding downstream 97431 17557841 ~ 17613208 (-)
G5449 NA non-coding downstream 262605 17399905 ~ 17448034 (-)
G5435 LOC104952676 non-coding downstream 359664 17348875 ~ 17350975 (-)
LOC120560178 NA non-coding upstream 24174 17738072 ~ 17739847 (-)
G5616 NA non-coding upstream 67882 17781780 ~ 17782013 (-)
G5638 NA non-coding upstream 138766 17852664 ~ 17852981 (-)
G5666 NA non-coding upstream 253429 17967327 ~ 17968130 (-)
G5679 NA non-coding upstream 287527 18001425 ~ 18003156 (-)
LOC120569099 NA other downstream 289541 17412053 ~ 17421098 (-)
LOC120558720 NA other downstream 1362717 16345718 ~ 16347922 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 2025000 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 2806410 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 2991537 14712144 ~ 14719102 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 103609 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 122006 17835904 ~ 17848037 (-)
LOC120556582 NA other upstream 165970 17879868 ~ 17881759 (-)
G5930 LOC102307335,LOC101466373 other upstream 1171070 18884968 ~ 18890220 (-)
mcrip2 mcrip2,LOC104963804 other upstream 1258072 18971970 ~ 18982318 (-)

Expression


Co-expression Network