LOC120556682


Basic Information

Item Value
gene id LOC120556682
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17835904 ~ 17848037 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU7631
AGGACCGGAAGGGCTTCGGTTTGATGAACAGGGAAGGGTTCTACCACACAGCATCTTGGGTAGTTTAGAGGATTTCAGAAGTTATCTGGAGGCCAAAGGGGAGACAGAGTTGGTGAAGCGAATACCAAAATCCCAGAGATATGCTCCATCTGAGGCCCCAGAGAGGCATCACTCTGAGCCTGTGGAGAATGGGCATGGCAACAAAAACATCCAGAGTAATGCCCTGCAGCATTGGCATACACATATGACGCAGCGCAGACAGCAGCAGGACTTCTTATCTGAGTTGCTCTACCGGCCAGTCGGAAACCTGCTGATGAACCAAGCTAACCGTTTCAGAGAAACTCAGGAGCAGAGGGAGCTTCTAAACCAAGTGATGCCACTCATCCACTCTGGATATGGTTACCGTGTGGGAAGTGAGTTTTGGAGTGTCCCCCAGCGTTATGGAGATGAAATGAGTGGCATCACAGCCACTCTGACTCAGACAGAGCAGGGCAGACGGGAGCCTGTCACACATGTAGGACAACCAGGCAGCATACTCCAGGAATCAGGAATAACTTTTACTGAGACTCT
>XM_039796386.1
CGTTTATGCCTGCTCACGCTAGTCTGTGTAGTCTGATGTCAGTTTTCTTTATATAAGCCTCAACCCCCTGATTCATCCACGTCATGCTGACTGACAGAAAGGGTTGTTCTTCAGGAGAACACCGTGTGTTGAGGAAAACATAATGGGGGCTATGCAGCTGAGCATAGGTCATATTTTGACATGATTTCAATCGATCGATCAagcaatcaataaatcaatcaatcagtcaattAGCCTGTTTGTCACATATGAAATCGTACAAGATGGTGAAATGTAATCCCACCAGGCCCTTTCAACTTGTGCATTATCCCTCGACATGGTTGAAACTGATAACAATTGAAGTGTGCATCCAATAAGATCCGTATCTGCAatacattattttcattattacttATAGCCATATAAGCCTACATTTAGTAAACTATTAGGCCTACATATGCATGTTTTTATTCCCAATACTCGCACACTTTTGCTTTGATATAGAGCCtaaaagaaagaatgaaagaaaggaaggacatagcctgtgttttctttctgtcaTGTTATCGATGACCCTAAATATAGCAAGACATTTTGGACTTGGGCCAAGTCCAAATTTCTTTTTAACTGTCTCTTGCTCTTGTTAacctttatttttacttttcagCAACGTTATACGCTCATGCCTCATTTTGTCTTTTTGCTGTTGTTCCATTTCTCACTGTCCGTGGTGTTGAGTCTTTCGTTGCCATGGTTACCACTTGACGCCGAAGTACAGCGCTAGCTTGATTAGCACTGCTAGCCACCATTAGTTGTCCGTGACAATTGCTTTTActgtagttagctagctagaccaAATGAACCGCAGCGAGACACCGAAGATGGAGTTAAGACCTCTAAGTCACTCAGAGAACAAGAAGCTAAGAACATCAGAAGAGTTGGACATCTTGGGTGATGACCAGTCCAGGAGCTCTACTCTTTCAGGCAGTGATATCCAGGCTCTGGCCATTCACCCACGGGACCTCAATAAACTTCATACACCAAAGCCACCCAAGAGCCGTCAACAACCAGTGCTCATGGCTTATGTGCGTAAGACACAGTCAGCTGATGAAGTTAGAAATGCTGTGCGAGGGCCGGTGGCTCATCTAGTGAATCTGGACCCTGGTTCTCAAAATCTGGACTACACAGGACCGGAAGGGCTTCGGTTTGATGAACAGGGAAGGGTTCTACCACACAGCATCTTGGGTAGTTTAGAGGATTTCAGAAGTTATCTGGAGGCCAAAGGGGAGACAGAGTTGGTGAAGCGAATACCAAAATCCCAGAGATATGCTCCATCTGAGGCCCCAGAGAGGCATCACTCTGAGCCTGTGGAGAATGGGCATGGCAACAAAAACATCCAGAGTAATGCCCTGCAGCATTGGCATACACATATGACGCAGCGCAGACAGCAGCAGGACTTCTTATCTGAGTTGCTCTACCGGCCAGTCGGAAACCTGCTGATGAACCAAGCTAACCGTTTCAGAGAAACTCAGGAGCAGAGGGAGCTTCTAAACCAAGTGATGCCACTCATCCACTCTGGATATGGTTACCGTGTGGGAAGTGAGTTTTGGAGTGTCCCCCAGCGTTATGGAGATGAAATGAGTGGCATCACAGCCACTCTGACTCAGACAGAGCAGGGCAGACGGGAGCCTGTCACACATGTAGGACAACCAGGCAGCATACTCCAGGAATCAGGAATAACTTTTACTGAGACTCTCGCGTCCACAGATATCAATGCACTGGAGGTTATTGGCTCTGGCAAGCCATTTACTTTTGTCACAGTGTGTCGTAGTCCCTTACTGgagaaggaagaagaggagacagaggagataAAGAAGGAGAACCTTGATCCTCTGGCACAGTATGATGATGTTCGGTCAGATGCTCTGCTCATTCCTGCCTTGAGGTTCTGTGGTCAGCTTGCTAGCTGGACTGGAAACTCCACCACTAACCAGGGAGAAGTAGGAATCAGTGCCACGGTAATCTTTGAAGCTCCGACTGGAGAAAGAGCCTCTTCCCACCTGGAGCTGCACAATGAAGGCAGCACAGCCATCTTCTACAGCTGGCAGCAGCTTCCCGTGCCGCACAGCTTTCCTAACCTGCGGTCACGAACAAAGAAGCTGCACTTCTACTTCAACTCCTCCTCtgGTGTGATCCGTCCAGGTGACACCCAGCGGGTGGAGTTCATATTTAAGTCAGAGGAGCCAGGCATCAGTACTGAACGATGGCAGCTCAACACCCACCCTGTGCTGCTGCAAGGAGCCTCCATGCAGGTCACATTAAGGGGAGTGGCTCTGTACCAGGACAAAACCGCAGACCAGAGGCTTTTCATAGAGACAAAGCTGGAAAAGATAGTGAAGGTAAAAATGTGTCTGTCGATTGTGCACGAGGTGGTGCTGGGGGTCCGCACCCCAGAGAGACCCAGCTCTCCTGCAGAACTTTACGTCACTGAAGAGCAAGAGTTTTTCAGGAAAAACCCCAATTTGCAGTACCTTCATGAGCCAGTGGAGGACCTAAAGAGACTGTGGCAAGAAGTGCATCCAGGACGCACCTGGGACTTCTCTGTCGATACACTCCGACAGGTTGTGCTGTCTCTGCCTGAGCTAGAAGCAGATCAGGAAAAGAGCCTGGCCCAGCTCAACTCCCTGTTTCTGCAGCTTTCTGAGCCTTCTCAACTGAAACACAACCAGCTAACAGTAGAAGCTATAGGGCAGCAGCTGTGGATGAAACTGCTGGACACTATGGCTGGTGAGGCCATGTGGCTCAGAAACCTGCTGGGCCttccagagagagacacaaggaTCGATAAAAAGGAGGAATCCCCCATCTTGGAAGCTGATATAGCTGATAACAAAAATGAGAAGAGTGAGAAAAAGGGAGGAGCAGCTGCTAAAGAGGAGAGAAGTGGGGCAAGGTCCAAAATTAAAGATGACAACAAAGGGGAGTCCAAGTCAGCAACTACTGAAAAATCATTGGAGGACAGCaaaaagaaggggaaaaaaaaggaggaaacgGTGAAACGCACAATGGAAAAGCAAGGGAAGGAATCGGCTCCACTGACAGATACCCCTCCAGACAGCGTCAGTCAACAACCTCCTGGTGACCAAAATGTAGAGGCAGAGGTGATGGACATTTACAGGAGGCTCCTGCACAAAAAGGTGTATGCTCTGATGGAAGACCTGGTGGACAACCTGTGTGACCTGATGGATGATCTTAATGAGGGAGATGAATAGGAGGAACACACTACTAACACGTGAGAGGCAGGCACAGGAGCCCACTGAACATATGCAACcaaatgtgataaaacataTCACATATTCTGAAACTGTTTTTCTACCTTAATTTGTTGTGAAAATGAATAAACTTTTTGGCGT

Function

GO:

id name namespace
GO:0043570 maintenance of DNA repeat elements biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko03430 Mismatch repair
ko03440 Homologous recombination
ko01524 Platinum drug resistance

RNA

RNA id representative length rna type GC content exon number start site end site
TU7631 False 570 TUCP 0.50 5 17843936 17845404
XM_039796386.1 True 3392 mRNA 0.47 19 17835904 17848037

Neighbor

gene id symbol gene type direction distance location
b3gntl1 b3gntl1,LOC105924764 coding downstream 23329 17794352 ~ 17812575 (-)
LOC120563097 LOC104965080,LOC103373413,LOC102785880,LOC100703819,LOC102203376 coding downstream 46924 17782589 ~ 17788980 (-)
LOC120560193 NA coding downstream 56627 17773284 ~ 17779277 (-)
LOC120560200 NA coding downstream 67729 17766923 ~ 17768175 (-)
LOC120556506 NA coding downstream 72095 17757669 ~ 17763809 (-)
tecrb tecr,LOC107390378 coding upstream 691626 18539663 ~ 18552834 (-)
tmed1b LOC104964575,LOC104925388,LOC103362227,LOC101073760 coding upstream 776071 18624108 ~ 18629125 (-)
LOC120571862 NA coding upstream 798122 18646159 ~ 18648400 (-)
LOC120557593 LOC103362234 coding upstream 827371 18675408 ~ 18702209 (-)
LOC120567401 nxnl1,LOC103362235,LOC101486728 coding upstream 854401 18702438 ~ 18705754 (-)
G5616 NA non-coding downstream 53891 17781780 ~ 17782013 (-)
LOC120560178 NA non-coding downstream 96057 17738072 ~ 17739847 (-)
G5608 NA non-coding downstream 101153 17703216 ~ 17734751 (-)
LOC120560186 NA non-coding downstream 135515 17699260 ~ 17700389 (-)
G5522 NA non-coding downstream 190239 17617187 ~ 17645665 (-)
G5638 NA non-coding upstream 4627 17852664 ~ 17852981 (-)
G5666 NA non-coding upstream 119290 17967327 ~ 17968130 (-)
G5679 NA non-coding upstream 153388 18001425 ~ 18003156 (-)
LOC120563150 NA non-coding upstream 157198 18005235 ~ 18008724 (-)
G5716 NA non-coding upstream 171586 18019623 ~ 18024037 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other downstream 143 17817507 ~ 17835761 (-)
LOC120560175 NA other downstream 122006 17710639 ~ 17713898 (-)
LOC120569099 NA other downstream 414806 17412053 ~ 17421098 (-)
LOC120558720 NA other downstream 1487982 16345718 ~ 16347922 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 2150265 15426544 ~ 15685639 (-)
LOC120556582 NA other upstream 31831 17879868 ~ 17881759 (-)
G5930 LOC102307335,LOC101466373 other upstream 1036931 18884968 ~ 18890220 (-)
mcrip2 mcrip2,LOC104963804 other upstream 1123933 18971970 ~ 18982318 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other upstream 1175179 19023216 ~ 19037081 (-)
G6084 NA other upstream 1641551 19489588 ~ 19545927 (-)

Expression


Co-expression Network