LOC120563150


Basic Information

Item Value
gene id LOC120563150
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 18005235 ~ 18008724 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU7695
TTTGCATATGGACAGACAGGTGAGCGTGGGAGTAAATAGTTTTAGCTATACCACACGCGAACATACATACCACTGACTGGATTAAGAGTTTTGTCGGTTTGCCAGAGCATCTTGCTTTGAACTAAGAGTCACCACAGGGCACGTCGTCGGTCATCGCACCTGGACGCTCAAAACCCCGGCAGAATCTTGGACAGTGACGAGACCCATTTGATCAACCCCAGATTTCATCATTTTTTCGCTGTCCTTTTTACCTTACCGATGCTGTGTTGGTCCAGATGTAACAACACAGGCCTCACCGACGTGATCGAGACTTTTCTATTCCTCAGGGAGGATTCTCCCCTCCTTCCCAGCTGTCTGTCACCATGGCGATGCAGGTGTTAATCCCACCTGCATTGTCAGTGTTTTTGTCTGCCGTGCTGTCCCTGCTCAGCttggctctgctgctgctgctgtgtgtcatcaggaagaaaagaaggatggagggaacaTACATGCCCAgtgcagaggagaggaaacagacgGCATCGGCGGGATCTGAAAAACCTGGCCTGCCTCTCCCGTTGCCCAAAGAAGAACGCCTCATATGATGAGCGTTTAGAAATAGACTCACCCCCCCATGTCACTGTGTACACCTGTGGATCAATACCTCCCATTTTCTGCTGTTGCTGTCCTCTGGGATGATCCACATTTGTCTTATGCACCAGAAAACCTTCAGAAACACTATCACTGTGCTGCACTTTTTCATTCTTGGTGACAACAAATACACTGATCAGATTATCACCCATTTCCCTGCATGAATGAAGAAATATGTCATTTGAGTTTCTGTCGTATTCCTTTGATCAAAATAACTCACTCCCTTTACTCTGCCACATGAGGAACATGAGCTGaagtatgttttgtatttgtacGGAGGTTAgtatttctttttgtgtgttctgtgtattTATATACTACACTCTTTGTGTTTTACAATATTTCCAGTTATGAAGTATATTGattaaaacactgaaaatgaCTGTGATGCACTTTTATGTCAAGCTCTGAGAAGCTCAATTTattagaaacaaaataaaagtatgtatGGTACACAAGGTGTTCTGTTAATAAACCAGATATGTGCACA
>XR_005639916.1
ATTTGCATATGGACAGACAGGTGAGCGTGGGAGTAAATAGTTTTAGCTATACCACACGCGAACATACATACCACTGACTGGATTAAGAGTTTTGTCGGTTTGCCAGAGCATCTTGCTTTGAACTAAGAGTCACCACAGGGCACGTCGTCGGTCATCGCACCTGGACGCTCAAAACCCCGGCAGAATCTTGGACAGTGACGAGACCCATTTGATCAACCCCAGATTTCATCATTTTTTCGCTGTCCTTTTTACCTTACCGATGCTGTGTTGGTCCAGATGTAACAACACAGGCCTCACCGACGTGATCGAGACTTTTCTATTCCTCAGGGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7695 True 1123 lncRNA 0.45 3 18005235 18008723
XR_005639916.1 False 332 lncRNA 0.48 2 18006371 18008724

Neighbor

gene id symbol gene type direction distance location
b3gntl1 b3gntl1,LOC105924764 coding downstream 192660 17794352 ~ 17812575 (-)
LOC120563097 LOC104965080,LOC103373413,LOC102785880,LOC100703819,LOC102203376 coding downstream 216255 17782589 ~ 17788980 (-)
LOC120560193 NA coding downstream 225958 17773284 ~ 17779277 (-)
LOC120560200 NA coding downstream 237060 17766923 ~ 17768175 (-)
LOC120556506 NA coding downstream 241426 17757669 ~ 17763809 (-)
tecrb tecr,LOC107390378 coding upstream 530939 18539663 ~ 18552834 (-)
tmed1b LOC104964575,LOC104925388,LOC103362227,LOC101073760 coding upstream 615384 18624108 ~ 18629125 (-)
LOC120571862 NA coding upstream 637435 18646159 ~ 18648400 (-)
LOC120557593 LOC103362234 coding upstream 666684 18675408 ~ 18702209 (-)
LOC120567401 nxnl1,LOC103362235,LOC101486728 coding upstream 693714 18702438 ~ 18705754 (-)
G5679 NA non-coding downstream 2079 18001425 ~ 18003156 (-)
G5666 NA non-coding downstream 37105 17967327 ~ 17968130 (-)
G5638 NA non-coding downstream 152254 17852664 ~ 17852981 (-)
G5616 NA non-coding downstream 223222 17781780 ~ 17782013 (-)
LOC120560178 NA non-coding downstream 265388 17738072 ~ 17739847 (-)
G5716 NA non-coding upstream 10899 18019623 ~ 18024037 (-)
LOC120566281 NA non-coding upstream 86186 18094910 ~ 18104342 (-)
G5733 NA non-coding upstream 336530 18345254 ~ 18350149 (-)
G5728 NA non-coding upstream 411922 18420646 ~ 18422700 (-)
G5739 NA non-coding upstream 414441 18423165 ~ 18428471 (-)
LOC120556582 NA other downstream 123476 17879868 ~ 17881759 (-)
LOC120556682 NA other downstream 157198 17835904 ~ 17848037 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other downstream 169474 17817507 ~ 17835761 (-)
LOC120560175 NA other downstream 291337 17710639 ~ 17713898 (-)
LOC120569099 NA other downstream 584137 17412053 ~ 17421098 (-)
G5930 LOC102307335,LOC101466373 other upstream 876244 18884968 ~ 18890220 (-)
mcrip2 mcrip2,LOC104963804 other upstream 963246 18971970 ~ 18982318 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other upstream 1014492 19023216 ~ 19037081 (-)
G6084 NA other upstream 1480864 19489588 ~ 19545927 (-)
LOC120569510 NA other upstream 1756169 19764893 ~ 19765387 (-)

Expression


Co-expression Network