XLOC_004602


Basic Information

Item Value
gene id XLOC_004602
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 15904124 ~ 15925797 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010731
gctttacaaaaggtgcacattactgcattacaatcagATTAAGTCAATAACAATCAAATTTATGTTATTGTATACAGACATAGTTATCGTGCAATATTATAGCATATAGGTCAGGGATTCTCAACCAAAGGGCCGCggcccactagtgggcctcagcAACCCTGCAGGTAGGCCACGATATGACCTCTCAATATTAAACTATAACTTTTTGGATTTCATTATagtatgctatattaaaatgatcgaAGTCATGCGCTTTCTCCTGTTCTCTAATTGATCACTTCAAACTCAAAACAAGCGCACAAACAGCTTGATCGCGTCTGCAACTACTTTACGCATGTCTGTTCAATCCCAAACTATGcgggaagtgaaagtgaaagtctctctttgtgtattttttttgtgaactatttAATACATCTGCATAGTTGTCTaaattaatgtcctgtgagtgtttaATAAGAGACGCGCACCACAGGAGGATCTAGCAAGGCTCAATGCATTTTTTCTaccatagaatgtaaaataaacttggaCATGAGCTTCAGACCAATAATATCCTGCAATCTCAACTGGCATCAGATCGActcgtttcaacagatttaggtcgtttaactttattttacatttgtctgtatagttttgatatatttaattaGTAGATTTTCAGTCAGTACAGTTTAAAGTAGAAGCTGTTCTTTTGCAGTCTCCCTGTTGATTTGTGGTTCTCTTTgaatctgtgtatgttttttaaaaaataaataaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010731 True 767 lncRNA 0.36 2 15904124 15925797

Neighbor

gene id symbol gene type direction distance location
XLOC_004601 svild coding upstream 80592 15690363 ~ 15823532 (+)
XLOC_004600 nmt1b coding upstream 227839 15666949 ~ 15676285 (+)
XLOC_004599 plcd3b coding upstream 240712 15622621 ~ 15663412 (+)
XLOC_004598 arhgap23b coding upstream 342255 15477111 ~ 15561869 (+)
XLOC_004596 plxdc1 coding upstream 442662 15363463 ~ 15461462 (+)
XLOC_004603 NA coding downstream 22239 15948036 ~ 15948551 (+)
XLOC_004604 znf281b coding downstream 161280 16087077 ~ 16102422 (+)
XLOC_004605 muc13b coding downstream 180662 16106459 ~ 16122514 (+)
XLOC_004606 lrp2b coding downstream 206815 16132612 ~ 16229550 (+)
XLOC_004607 mpp3b coding downstream 307280 16233077 ~ 16276276 (+)
XLOC_004597 CR749751.1 non-coding upstream 522310 15381694 ~ 15381814 (+)
XLOC_004593 NA non-coding upstream 788693 15111405 ~ 15115431 (+)
XLOC_004590 NA non-coding upstream 1088179 14815600 ~ 14815945 (+)
XLOC_004589 NA non-coding upstream 1159422 14741152 ~ 14744702 (+)
XLOC_004582 BX640453.1 non-coding upstream 2161448 13740216 ~ 13742676 (+)
XLOC_004611 NA non-coding downstream 561168 16486965 ~ 16487567 (+)
XLOC_004612 NA non-coding downstream 564401 16490198 ~ 16491806 (+)
XLOC_004613 NA non-coding downstream 642057 16567854 ~ 16570044 (+)
XLOC_004614 NA non-coding downstream 657576 16583373 ~ 16585054 (+)

Expression


Co-expression Network