G5809


Basic Information

Item Value
gene id G5809
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 18584673 ~ 18587536 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU7874
CTTCCAAATTATTAATTGTCAATCAATAAACCTATTTACTTGTTACAACTACAACAAAGGCAAAACAAGCaaacatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgagaaaGAGGGCGGATGAAACACAGTGAGATCtgagcatagacagtatataagaatggaccaacatatcctgttgctctggacagagaccagtgaaggatattagaagcacttttctggtgagtGCTAGCAttactgcacagcctccaactgagagagacaacgtaaatgtgacgtgagcaacgtgtctgaaagttgtaagtcttctggtagctgtgccaagagaaatctcaatcattcccaatcttacagagacggagagtgtaggtatatgtaaggagataacatgggtacaggctaattattgctaactaaaatgctagttaacattagtaattaaacttaaacagctcatgtaagtcgaaactgcttgcgagcttctcctgtactatgcggtaattcctctactatgtgacacaatcgttagcctatttttacaaaaacgtctgctacggagccataacgtgagatacaaggtaatggagccttttatacattgtcgtgtttctttggaaataaacaatggacaaatagagtctttaaacgcttcagatgtaaagttattcgctgtcaagtgacgtcaaaatgaatgctagtcagtggaatgctaatgggaggtgatcgctttgtagcatcaaaatggcaccataggaggtacgagttctgaagcgaagcttacccccttggattTGAGGCCCTTTGTAGACACAAATTTAAGAAAGACACTCGGAAAGACACTCGGGATCTTGATTTTCGAGGAAGTGATAATTACCAATCTTCTCGTTCACCCAGGACTCTGACCCAATTACTCAGCCTCTTGTGGGTCAGCAACTGACTTCTTGCGGCAATAATAACCAATCCTCTTGTCTACACAGGGCAGTGCTGGGGTTCGAGTGACGAACGGAAGGTTTATTATCTCGCTTGTACAGTAACTAACTTCTCCGCGGAGGGAGATAGCAGTGTAGCATTACAGTTTCAATATAAACTACAGTATCAAACTCAAAATATCAACAAGTCCCGTGATCCAGTAAATTCAAAGCAATAAATTGGTGGTCATAATCATATTAATGGTGAGACATTTGCAACAGTAGCACTTACTAATTAATAACACATTCAATGTAGTAACAAGTTGCAGCAACAGCAGCTACTGACATTAGTAACACACACCTATATTTCTCTGCCCAGAAACTTAAGCCtccatactgtgtgtgtgttcccattTGTTTAGTCCCATAGATGCTCCACAGTAAACAAAACGGATCCGTCTCACTTGTGATTCACGGAAAAAGCTGGTTTCTCTTCAAAGGCAGTGAAGAACCAATTCAGTCGACTTGATAAGAAAAGCGGAAAATGAACTATTAAATTAGACTAGGCTACAAACGTTTGGCTGTGCTTCCAGTTTAGCACGGATGCAATGGATAGCAATGATTTGTCTTCTTTAGCCACGTGTTGCAGTGAGTGACCGATGTTTGTCCTCTTTAGCAACTCGAGGTGTTGCAGGGAGTGGCAATGAGAAGTGGGTGACAGGGACTTTTATTCCTTAGGCCACCTGGTCAGAGCCCCCTGCTGCATTCAGGGACCCCGGCCAATAGGAAATCAGTGTTCTCGCAGGTAATATAGGTGTGAACTACAACCTCTGTAGTTTTATATATCTCCGGCCATTTTTCTCATGGAGGTGTGACTTTTAGTCTTTAGAGTTGACCTGGAGGCCTCATTCTCTTTGTTTGAAAGGGCGCTCAGGCCTCATGTGAGCCATGTGGTTTCCTTTGTCTCAGAGGTCACATGTTCTGAGATCTCTATGTTTAAACATAGTGTTTAACATCACTGCTCGGTTCCCAACATGACCAACTCTCATCAACCACAAACAGActcacaaaaatacaaaaacacacagtaacgaaaatgtatatattgacTTCTTGGTTTTATCGGGTTAAAATTTTAAATCTACTGAACATGATTAATATTAGTTTTAGAGGAGTTATCTAAATATTTCTTATAATATCTAAAtgttaaaaatcaataaaattgaatagaaTGATTTAAATTATCAATTCACAACAACCTGTGGATTTAGTATACAGAAATGTGTGAGTGGTGGGTATTTTCTGTTTAGCATAAATCGGAATATAATCTAATAATACAGCAGAGGAAGATACTGCACATAACAGTGAAGGTGATCAGCACTGAGGTCATACATTGCAATAGACTGTTGATTCATCTGTTGCTTTGTGTTGAATAGCGGAGTATGTAAGAACAGGTGTGACAGTGCTGGAGTCTGTGTGTTTTATGAAGCTAACAGTGGAGTAGGAGAGACCTTCTGGTTGGATCTGAGACTCTGATGAAACAATGACGTTGGAGTAAATATTATCTGAGGGATAGCTGCTGGTGTCTTGGTGCTGAACGGTTGACGAGCAGAAGATGCTGTTAGCCCTGCCATCTGTTTCTTGATCCTCATTGGCTGTTGAAGAGGAAGTAGTGACGTGGTTTACATCTTGTTTCTGACTGGATGGTGTTGCAAATACTATGTCATGGTCCTTTCCTGTATGGTGAGTGATGATACAATACACAGTTTTAGATCCCTGTGAAATTTAAACTAAGTGTTTTACTTtcactttctgaaaaacaatcAATATTTGTGGTGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7874 True 2813 lncRNA 0.43 2 18584673 18587536

Neighbor

gene id symbol gene type direction distance location
tecrb tecr,LOC107390378 coding downstream 31839 18539663 ~ 18552834 (-)
b3gntl1 b3gntl1,LOC105924764 coding downstream 772098 17794352 ~ 17812575 (-)
LOC120563097 LOC104965080,LOC103373413,LOC102785880,LOC100703819,LOC102203376 coding downstream 795693 17782589 ~ 17788980 (-)
LOC120560193 NA coding downstream 805396 17773284 ~ 17779277 (-)
LOC120560200 NA coding downstream 816498 17766923 ~ 17768175 (-)
tmed1b LOC104964575,LOC104925388,LOC103362227,LOC101073760 coding upstream 36572 18624108 ~ 18629125 (-)
LOC120571862 NA coding upstream 58623 18646159 ~ 18648400 (-)
LOC120557593 LOC103362234 coding upstream 87872 18675408 ~ 18702209 (-)
LOC120567401 nxnl1,LOC103362235,LOC101486728 coding upstream 114902 18702438 ~ 18705754 (-)
LOC120567388 LOC100712387,LOC102193985,LOC102310568,LOC101487876 coding upstream 117868 18705404 ~ 18710720 (-)
G5801 NA non-coding downstream 9342 18575017 ~ 18575331 (-)
G5800 NA non-coding downstream 10419 18574050 ~ 18574254 (-)
LOC120559135 NA non-coding downstream 11522 18569244 ~ 18573151 (-)
G5787 NA non-coding downstream 45019 18539322 ~ 18539654 (-)
G5786 NA non-coding downstream 45584 18538868 ~ 18539089 (-)
G5894 NA non-coding upstream 42740 18630276 ~ 18689045 (-)
LOC120545674 NA non-coding upstream 76408 18663944 ~ 18664507 (-)
G5921 LOC103372008 non-coding upstream 248741 18836277 ~ 18857539 (-)
G5926 LOC103372008 non-coding upstream 287339 18874875 ~ 18875738 (-)
G5935 NA non-coding upstream 342720 18930256 ~ 18930500 (-)
LOC120556582 NA other downstream 702914 17879868 ~ 17881759 (-)
LOC120556682 NA other downstream 736636 17835904 ~ 17848037 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other downstream 748912 17817507 ~ 17835761 (-)
LOC120560175 NA other downstream 870775 17710639 ~ 17713898 (-)
LOC120569099 NA other downstream 1163575 17412053 ~ 17421098 (-)
G5930 LOC102307335,LOC101466373 other upstream 297432 18884968 ~ 18890220 (-)
mcrip2 mcrip2,LOC104963804 other upstream 384434 18971970 ~ 18982318 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other upstream 435680 19023216 ~ 19037081 (-)
G6084 NA other upstream 902052 19489588 ~ 19545927 (-)
LOC120569510 NA other upstream 1177357 19764893 ~ 19765387 (-)

Expression


Co-expression Network