G590


Basic Information

Item Value
gene id G590
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 1516126 ~ 1516675 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU795
ggagtccagtatacttgtggggtcccgaaagccttgtggggccaaaatgctgaaccccccaagtttaaagggctgtttgagggttaagacttggttttaggattagggatagaattaggttatggttagggtgagggtaagggttaagattaggcatttagttgtgatggttaaggttagggtaagggttaaggttaggcatttagttatgatggttaaggttagggtaaggggctagggatgCATTAtatcaatgacgggtccccacaaagatagtaata

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU795 True 281 lncRNA 0.45 2 1516126 1516675

Neighbor

gene id symbol gene type direction distance location
tomm20b tomm20,LOC103375291,LOC103383373,LOC100703030,LOC108247505 coding downstream 57259 1451999 ~ 1458867 (-)
LOC120566769 NA coding downstream 938134 572764 ~ 577992 (-)
tbce NA coding downstream 1086142 404857 ~ 429984 (-)
LOC120560351 NA coding downstream 1186093 319682 ~ 330033 (-)
LOC120560232 LOC103372506 coding downstream 1209496 277480 ~ 306630 (-)
LOC120560873 LOC104946033 coding upstream 108855 1625530 ~ 1629159 (-)
LOC120566021 NA coding upstream 580694 2097369 ~ 2106501 (-)
LOC120566031 NA coding upstream 611898 2128573 ~ 2135521 (-)
sde2 NA coding upstream 735377 2252052 ~ 2266353 (-)
LOC120566094 LOC103375177,LOC102205209,LOC101467885,LOC100705917 coding upstream 754785 2271460 ~ 2302586 (-)
G570 NA non-coding downstream 130532 1385333 ~ 1385594 (-)
LOC120566915 NA non-coding downstream 163143 1352254 ~ 1352983 (-)
G513 NA non-coding downstream 202648 1220503 ~ 1313478 (-)
G591 NA non-coding upstream 19571 1536246 ~ 1536655 (-)
G583 NA non-coding upstream 31357 1548032 ~ 1575776 (-)
G593 NA non-coding upstream 65308 1581983 ~ 1599108 (-)
LOC120566920 NA non-coding upstream 92857 1609532 ~ 1675981 (-)
G457 NA non-coding upstream 99215 1615890 ~ 1689438 (-)
G565 LOC105912973,LOC105893694,LOC105900140,LOC105893089 other downstream 155653 1359664 ~ 1360473 (-)
G519 NA other downstream 541299 966236 ~ 974827 (-)
G516 myhz1.2,LOC106938366,LOC104959125 other downstream 629783 885349 ~ 886343 (-)
G413 NA other downstream 1076678 438657 ~ 439448 (-)
LOC120574930 LOC103372508,LOC108249786,LOC103470876,LOC102234899 other downstream 1269153 233044 ~ 246973 (-)
LOC120566421 NA other upstream 216871 1733546 ~ 1749692 (-)
G670 LOC103370005,LOC106529077 other upstream 532394 2049069 ~ 2050384 (-)
G974 NA other upstream 1341821 2858496 ~ 2859302 (-)
G1003 tmem178a other upstream 1447065 2963740 ~ 2964320 (-)
G1008 tmem178a,LOC102307988 other upstream 1458563 2975238 ~ 2978115 (-)

Expression


Co-expression Network