cxcl12b (cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533)


Basic Information

Item Value
gene id cxcl12b
gene name cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 19023216 ~ 19037081 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU8146
TTGTGCCCTGGAttgtaacagagagagagagagagcagccctCCTGCAGCCTGTTAGCCCACCACCATGGATGTCAAACTGCTGGCACTGATGGCTCTGCTGGCCGTGGCCACACATGTACCAACCTCCAACGcAAAGCCCATCAGTCTGGTAGAGCGGTGCTATTGTCGTTCTACCCTCAACACGGTTCCTCAGCGCTCCATCAAAGAGCTCAAGTTCCTCCACACACCCAACTGCCCCTTCCAAGTCATTGCCAAGCTAAAGAACAACAGGGAGGTTTGCATCAACCCGGAGACCAAGTGGCTGCAGCAGTACTTAAAGAACGCCATTAACAAGGTGAAGAAATCTAGAAGACGCAATAACAAGAAAATCTAAACAAAAAGGGAAGACATGTATGTTGTCAAGCCTGGCATCCTCGGCACGGGTCGAACCTGTATACCTCCCTGTCACTGCTATGGATGTATGTAAACAAGCTGTATGTACCTGTCAACCAGTCTGGACCGCTTGCAGAACCAGCACTTCACCGCCAAACCGTGCCGTCCCCAGCACCGCCACCAAACCCTCTGTACACCCACGCAGTCACCTCCAACTCTCCACGTTAGCACCAGGTGCAACTATACCTTGAAATGGTGGAACACATGCTAATGTCAGATACATGTGTGTGAGTtatgggcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgcacgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgctaacgCTGTGTGCCTATAGTCTTTCCTACTTCACACAGTCTGAGAGGAACAATTTGAGCTTTCTGTCTCATACAAGGCTTTGTGCCACCTTCATGTCATGTCAATGTCAAAAATATTCACATAATTCGCCTGTAAGGAAATTAGGATTGGGATTATGTTGGCTGGTCATGTCTTATATTAATTGTGGTTTTGCAAACTAAAGAGGTGTGAACCAAGTCATTTATTATCACAGTAATATCTCCATGTATACTATTTTTAAAAGGAGTGACTACTCTTATTTCCATGTACTACTACTAAAATGTATTTGGGATGGAGATGTTACGGActtaaatgtaaacattttgcTCTGGTAAGGAGTTAAAAGAGGCATTACTCCATGACTGAGGGGTCATGGGGCAGTAACAGAGGCTGGCCAATGGTGTTAACCCTTCACAAGCAGTGACCAATCAGGGCAGGCCATGCTACAGCAGTATCTTGAATTGAACTTTAAATTGCTCCACCAGCAGGAACAAACAGATGGAAGCTCACACACACTGCTAAGAAACCAGCACTGATTTTTGTGGTGCTACATATTTAGTATAAGTGGTCAGAGCCATTGACATAATTATACTTCACTGTTTATGTTATGCAAGATTTAAGAAGGGATGTTGTGACCTCTATGTCTTATATGAAAcacaattatgttttttttaccagtcacaaaatatttaaagcGCTGTTGTTAATCTgatatgaaaaatgaaaatagaaaGCTGATGTTATACTAAGGCCTTGATATATACAGTACTATAAAGAAATGAAACACTTACCGTATCAATGCacagtttttgttgatttaagaTATCAGTATACAGAGTCCAGACCAAATattaaaacagtaaaaaatatGCTACATGAAGAAACCTTGAACCTCAAAAAGCATGACTTTcgatttcattcatttttagaAAAACGTAGATCATCATAATTTTTTTATCTCTTACGCCTTATCAAAGGATGCTATAGGTAAATGTATATCAAGAAAACCTAGAGTATTTCATGCCAACACCTGTCCTTGGTAAGAATGAAAAGCTAATAAATTGTCACATAAAATAGCCGAACGATAAATATCACAAAGCGAATGTTCACGgtggcaaaaataaaaaaattgattatccttttttatatatatttgagcCACTTTATTATCAGATGTGTCttttaaatgttattgttttatttttatattgtgtatAATCTTActaaatgctttttttaatgCAATGTACAGTAGGCAGTAGCTACTAAATGAGGGCTAGGCCTATAGTCCTTAAAATGCAAGAGACAGTATTAAGCTTCATTTTTAAGGTTTCATGCAATATTTCACAGATATGTAATGGTATGCAACACTTAGATACCAtttttcgattttttttttttttttttttttaatatggctGAAAAAATTAAGccaaacaaattaaatattgtCCTCCTGGTTTGTTGTTTTCTCCTCACTGTTTCCTTATCCACCCATCTGAAATGTAACAACGGTGAACTGTATGAAATCTGTTAAGTTCAACACACAGTGATTGAAAACAAAAGTTGCTGTCATTGGGTTACATGACATGAGTCAGAAAACTATTCAGCCCACCAGTCGTCCCCGTTGAACACTTGATTcaatttttaatagttttactgAGGTTGCTGTATTATGTGTCAATAGAGCCGCAGAGCCAAAACAGAACAATACCTTTAAGTTGAGATCCAAGCGACCAACATGTGCTTTCAATCTGGACACTCCCAGCACCCCACGggcttttcttttcactttcacTCAACTGCTGCCATGcaacactttctttttttccctaaaaTTGAAATGCACATTGTGTTTGGTTGTGGTAATTTCTTTGGTCTatgtttagttttgttttaCACAGTCTATTTGCTGAGTGCCTGATCGCAGTCGATACGATATCAATTTGGAGCTAATGGTGCAATAATCCTGTAAGTGTAATTCACTTCCCATTAATCTAATAGAAGTTAATGGACATTCATTTTATATGATTATACTCATTTGTTTGAACACATTgctaaatataaaatgtttctgttttcaAATGCATTGACATACAACGACAAAAGTCTCCTTTCATTCATTACAACACCGCCATCCATTCCCAAATTACTTTATTAACTATAGAGTTAAATCAAAGAAGATTGTGTTACTTCTGTAAAATTCTACCTTTCCTATGTATAAACATGATAATTATCTCAATAACACGAAAAAGATTTTGCATTAAGTACACGTGGAAAAACTTTATTAACCGCACTGTTTCATGACTGATTCAGTTAATGCGATACATGTGTAATAACAGGTAATTAGTTTTATTAATCAGACTTTAAGTGCTTTTATGTTTAGTACTGTGGCCCCTGTGGAAACATTTAACCCTTGCAGTGTTACTGCCACTGTCACTGCAGAGAATATTTAGTGTAATTAAAGTGTGTCAGACAAACACATAGACTCCTTCATCTTTGTGCAAATAGAGCTTTTACAGAAATATTGTATGGGTATTATTTGGAACAAATACACATTCAGGTTCACATGTATCTCCACTAATGTGTTTATAATCAAAGTATGTTGTACTTTGGACCCCAAGACAATGTGAAACATTTCTTTTGAGGCAGCTTCTGACACATATCCTTCATACACGTAAAATCGATTAGAGTATTATTCTCTGTATTGTCACTGTTTTTAAACCAAGAGGCAGTATTTTAAGTATGATACACAATCCCTTTTTCAATAAAGTC
>XM_039815221.1
AGCTGGCAGTCACAGTTGTGCCCTGGAttgtaacagagagagagagagagcagccctCCTGCAGCCTGTTAGCCCACCACCATGGATGTCAAACTGCTGGCACTGATGGCTCTGCTGGCCGTGGCCACACATGTACCAACCTCCAACGcAAAGCCCATCAGTCTGGTAGAGCGGTGCTATTGTCGTTCTACCCTCAACACGGTTCCTCAGCGCTCCATCAAAGAGCTCAAGTTCCTCCACACACCCAACTGCCCCTTCCAAGTCATTGCCAAGCTAAAGAACAACAGGGAGGTTTGCATCAACCCGGAGACCAAGTGGCTGCAGCAGTACTTAAAGAACGCCATTAACAAGGTGAAGAAATCTAGAAGACGCAATAACAAGAAAATCTAAACAAAAAGGGAAGACATGTATGTTGTCAAGCCTGGCATCCTCGGCACGGGTCGAACCTGTATACCTCCCTGTCACTGCTATGGATGTATGTAAACAAGCTGTATGTACCTGTCAACCAGTCTGGACCGCTTGCAGAACCAGCACTTCACCGCCAAACCGTGCCGTCCCCAGCACCGCCACCAAACCCTCTGTACACCCACGCAGTCACCTCCAACTCTCCACGTTAGCACCAGGTGCAACTATACCTTGAAATGGTGGAACACATGCTAATGTCAGATACATGTGTGTGAGTtatgggcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgcacgcgtgcgtgtgtgtgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgctaacgCTGTGTGCCTATAGTCTTTCCTACTTCACACAGTCTGAGAGGAACAATTTGAGCTTTCTGTCTCATACAAGGCTTTGTGCCACCTTCATGTCATGTCAATGTCAAAAATATTCACATAATTCGCCTGTAAGGAAATTAGGATTGGGATTATGTTGGCTGGTCATGTCTTATATTAATTGTGGTTTTGCAAACTAAAGAGGTGTGAACCAAGTCATTTATTATCACAGTAATATCTCCATGTATACTATTTTTAAAAGGAGTGACTACTCTTATTTCCATGTACTACTACTAAAATGTATTTGGGATGGAGATGTTACGGActtaaatgtaaacattttgcTCTGGTAAGGAGTTAAAAGAGGCATTACTCCATGACTGAGGGGTCATGGGGCAGTAACAGAGGCTGGCCAATGGTGTTAACCCTTCACAAGCAGTGACCAATCAGGGCAGGCCATGCTACAGCAGTATCTTGAATTGAACTTTAAATTGCTCCACCAGCAGGAACAAACAGATGGAAGCTCACACACACTGCTAAGAAACCAGCACTGATTTTTGTGGTGCTACATATTTAGTATAAGTGGTCAGAGCCATTGACATAATTATACTTCACTGTTTATGTTATGCAAGATTTAAGAAGGGATGTTGTGACCTCTATGTCTTATATGAAAcacaattatgttttttttaccagtcacaaaatatttaaagcGCTGTTGTTAATCTgatatgaaaaatgaaaatagaaaGCTGATGTTATACTAAGGCCTTGATATATACAGTACTATAAAGAAATGAAACACTTACCGTATCAATGCacagtttttgttgatttaagaTATCAGTATACAGAGTCCAGACCAAATattaaaacagtaaaaaatatGCTACATGAAGAAACCTTGAACCTCAAAAAGCATGACTTTcgatttcattcatttttagaAAAACGTAGATCATCATAATTTTTTTATCTCTTACGCCTTATCAAAGGATGCTATAGGTAAATGTATATCAAGAAAACCTAGAGTATTTCATGCCAACACCTGTCCTTGGTAAGAATGAAAAGCTAATAAATTGTCACATAAAATAGCCGAACGATAAATATCACAAAGCGAATGTTCACGgtggcaaaaataaaaaaattgattatccttttttatatatatttgagcCACTTTATTATCAGATGTGTCttttaaatgttattgttttatttttatattgtgtatAATCTTActaaatgctttttttaatgCAATGTACAGTAGGCAGTAGCTACTAAATGAGGGCTAGGCCTATAGTCCTTAAAATGCAAGAGACAGTATTAAGCTTCATTTTTAAGGTTTCATGCAATATTTCACAGATATGTAATGGTATGCAACACTTAGATACCAtttttcgattttttttttttttttttttttaatatggctGAAAAAATTAAGccaaacaaattaaatattgtCCTCCTGGTTTGTTGTTTTCTCCTCACTGTTTCCTTATCCACCCATCTGAAATGTAACAACGGTGAACTGTATGAAATCTGTTAAGTTCAACACACAGTGATTGAAAACAAAAGTTGCTGTCATTGGGTTACATGACATGAGTCAGAAAACTATTCAGCCCACCAGTCGTCCCCGTTGAACACTTGATTcaatttttaatagttttactgAGGTTGCTGTATTATGTGTCAATAGAGCCGCAGAGCCAAAACAGAACAATACCTTTAAGTTGAGATCCAAGCGACCAACATGTGCTTTCAATCTGGACACTCCCAGCACCCCACGggcttttcttttcactttcacTCAACTGCTGCCATGcaacactttctttttttccctaaaaTTGAAATGCACATTGTGTTTGGTTGTGGTAATTTCTTTGGTCTatgtttagttttgttttaCACAGTCTATTTGCTGAGTGCCTGATCGCAGTCGATACGATATCAATTTGGAGCTAATGGTGCAATAATCCTGTAAGTGTAATTCACTTCCCATTAATCTAATAGAAGTTAATGGACATTCATTTTATATGATTATACTCATTTGTTTGAACACATTgctaaatataaaatgtttctgttttcaAATGCATTGACATACAACGACAAAAGTCTCCTTTCATTCATTACAACACCGCCATCCATTCCCAAATTACTTTATTAACTATAGAGTTAAATCAAAGAAGATTGTGTTACTTCTGTAAAATTCTACCTTTCCTATGTATAAACATGATAATTATCTCAATAACACGAAAAAGATTTTGCATTAAGTACACGTGGAAAAACTTTATTAACCGCACTGTTTCATGACTGATTCAGTTAATGCGATACATGTGTAATAACAGGTAATTAGTTTTATTAATCAGACTTTAAGTGCTTTTATGTTTAGTACTGTGGCCCCTGTGGAAACATTTAACCCTTGCAGTGTTACTGCCACTGTCACTGCAGAGAATATTTAGTGTAATTAAAGTGTGTCAGACAAACACATAGACTCCTTCATCTTTGTGCAAATAGAGCTTTTACAGAAATATTGTATGGGTATTATTTGGAACAAATACACATTCAGGTTCACATGTATCTCCACTAATGTGTTTATAATCAAAGTATGTTGTACTTTGGACCCCAAGACAATGTGAAACATTTCTTTTGAGGCAGCTTCTGACACATATCCTTCATACACGTAAAATCGATTAGAGTATTATTCTCTGTATTGTCACTGTTTTTAAACCAAGAGGCAGTATTTTAAGTATGATACACAATCCCTTTTTCAATAAAGTCATATGAAATAAAACCA
>XM_039815229.1
AGCTGGCAGTCACAGTTGTGCCCTGGAttgtaacagagagagagagagagcagccctCCTGCAGCCTGTTAGCCCACCACCATGGATGTCAAACTGCTGGCACTGATGGCTCTGCTGGCCGTGGCCACACATGTACCAACCTCCAACGcAAAGCCCATCAGTCTGGTAGAGCGGTGCTATTGTCGTTCTACCCTCAACACGGTTCCTCAGCGCTCCATCAAAGAGCTCAAGTTCCTCCACACACCCAACTGCCCCTTCCAAGTCATTGCCAAGCTAAAGAACAACAGGGAGGTTTGCATCAACCCGGAGACCAAGTGGCTGCAGCAGTACTTAAAGAACGCCATTAACAAGTAA

Function

symbol description
cxcl12 Enables CXCR chemokine receptor binding activity; chemokine activity; and integrin binding activity. Involved in several processes, including integrin activation; negative regulation of apoptotic process; and regulation of leukocyte migration. Acts upstream of or within positive regulation of T cell migration and positive regulation of cell adhesion. Located in extracellular exosome. Part of collagen-containing extracellular matrix. Implicated in breast carcinoma; diabetic angiopathy; human immunodeficiency virus infectious disease; and type 1 diabetes mellitus. Biomarker of diabetic retinopathy; insulinoma; periodontitis; and type 2 diabetes mellitus.

NR:

description
chemokine CXCL12b precursor

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0090024 negative regulation of neutrophil chemotaxis biological_process
GO:0001764 neuron migration biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006955 immune response biological_process
GO:2000472 negative regulation of hematopoietic stem cell migration biological_process
GO:0050930 induction of positive chemotaxis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0048842 positive regulation of axon extension involved in axon guidance biological_process
GO:0030239 myofibril assembly biological_process
GO:0031101 fin regeneration biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0008354 germ cell migration biological_process
GO:0030900 forebrain development biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0005576 extracellular region cellular_component
GO:0008009 chemokine activity molecular_function
GO:0042056 chemoattractant activity molecular_function

KEGG:

id description
K10031 CXCL12; C-X-C motif chemokine 12

RNA

RNA id representative length rna type GC content exon number start site end site
TU8146 False 3635 lncRNA 0.38 5 19023232 19037066
XM_039815221.1 True 3686 mRNA 0.38 4 19023216 19037081
XM_039815229.1 False 354 mRNA 0.53 3 19028240 19037081

Neighbor

gene id symbol gene type direction distance location
gde1 gde1,LOC100700294,LOC102797450 coding downstream 32730 18985103 ~ 18990486 (-)
LOC120560204 pbx4,LOC104952752,LOC103392870,LOC102788435 coding downstream 218582 18790616 ~ 18804634 (-)
LOC120562921 LOC104952754,LOC103372004 coding downstream 235358 18783925 ~ 18787858 (-)
LOC120559658 LOC104952753 coding downstream 256332 18752659 ~ 18766884 (-)
LOC120559642 slc27a1,LOC103362239 coding downstream 271225 18743569 ~ 18751991 (-)
xpnpep1 xpnpep1 coding upstream 68166 19105247 ~ 19120656 (-)
cusr NA coding upstream 83952 19121033 ~ 19142663 (-)
pnpla6 pnpla6,LOC107083430 coding upstream 567348 19604429 ~ 19639873 (-)
LOC120568545 atp5h,LOC101475776,LOC102207628,LOC102296504,LOC100697434 coding upstream 603450 19640531 ~ 19644093 (-)
LOC120574931 LOC103369153,LOC102777830,LOC104922226,LOC101476272 coding upstream 608420 19645501 ~ 19647903 (-)
G5980 NA non-coding downstream 11699 19011194 ~ 19011517 (-)
G5970 NA non-coding downstream 61219 18961212 ~ 18961997 (-)
G5954 NA non-coding downstream 66585 18956407 ~ 18956631 (-)
G5935 NA non-coding downstream 92716 18930256 ~ 18930500 (-)
G5926 LOC103372008 non-coding downstream 147478 18874875 ~ 18875738 (-)
G5984 NA non-coding upstream 13481 19050562 ~ 19050835 (-)
G6020 NA non-coding upstream 199112 19236193 ~ 19242318 (-)
G6025 NA non-coding upstream 224154 19261235 ~ 19263727 (-)
G6052 smc3 non-coding upstream 350246 19387327 ~ 19394267 (-)
G6081 pdcd4,LOC104958203 non-coding upstream 444054 19481135 ~ 19488019 (-)
mcrip2 mcrip2,LOC104963804 other downstream 40898 18971970 ~ 18982318 (-)
G5930 LOC102307335,LOC101466373 other downstream 132996 18884968 ~ 18890220 (-)
LOC120556582 NA other downstream 1141457 17879868 ~ 17881759 (-)
LOC120556682 NA other downstream 1175179 17835904 ~ 17848037 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other downstream 1187455 17817507 ~ 17835761 (-)
G6084 NA other upstream 452507 19489588 ~ 19545927 (-)
LOC120569510 NA other upstream 727812 19764893 ~ 19765387 (-)
micu3a micu3,LOC100706756,LOC102779354,LOC101479276 other upstream 729416 19766497 ~ 19796522 (-)
spink4 NA other upstream 1005682 20042763 ~ 20044726 (-)
LOC120574674 NA other upstream 1150200 20187281 ~ 20193338 (-)

Expression


Co-expression Network