G6025


Basic Information

Item Value
gene id G6025
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 19261235 ~ 19263727 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU8200
CTGCTCATACGCTTTTATTGTTCATAACAGGAACGTTGCCAAATAAAGTGCTGTATACTGATATCACATTCACTGGCGCCAGGACAGGATTACAGTGTTGTAAATATATTGAAGCTACACCTAGCAATATGTGAAACAAAAATGATCCTAGATAAAGACTTTCTCAAGACATTCTCTCCATTCACTAACACACTCCCTGATGTGTCTCTTAGGGCCTCAGTGGATTTGATGATTTTTTAGCATTTGTGTTAACCAGCTTGTAATACCACATAGATGCCAGAAAAGTTTATTCTAATAACCTTTTCACCAACTATTCAGGCATGTCTTAAATTGTCTGGTTTAAGTATCCTAAGTatgctaaaaaaaatatgatattTGACAGTGGTGGAGGACGCTGAGTTGTATTGTTTCCCCCAGAAGAGTTTAATTAAGCCAAGGTTAGAAAAGGCATCAATACTTTGTTTATATTTCCAACCCTTTCCAAAAAGAGACATTGTAAGAAATGATGGGCAGTCCACAGTGAACATCTCCACCAATAATATTTGCAGCAGCTTAGCATCATTAAGATAAACATTGTttggggaatgtttttttttagcaatcgGCCACGGACCCATTTGGAGGAAAACTAAAGGCTCTGCTAGTTCTAGGTCAACATGTAAATATTCAGTCAATTGGCAGCTACTGAAAGACCAGAGAGACATCTCCCGGGGAATTTAGCACACATTACAGTATCATGACATTTCTTTTTGCATATTTTGTTTTGCATCTGAGGATATGAATGGCAAGGCACATTGGCTGCTCATATGCACACAAAGTCCCCTAGTTGCCTGAACAGTCTATTGGACAGTCCATGCTTGCTAAGCAGCACAGACGCCATGTTGTGTCAGGCTGTGACAGGTTTGCACCAAGTGCTGTTTATTTTAATGAGTGTGGCAGACTCTTTGACAGTAAAGTGAGCATCTGTGGACACATCACAAGGCATGCCAATCAAAAAGTCACACCTACTCAtacaaaaaaactagaacaaCATAAACATGGTTTAAAACAGTGGTTCCTGAGCTTTTTGGACCTTTAAAGGGGAACTCAATTGATTTTACACATCTAAGTCTATTTACAGGTCTTGGGGAGTACTACttcatatgtgaaaaaaagttttataaaGCTTTTTGTGGCTCAAGAGGGAGCTGCATGAAATTTGATAAATttcctcaagtgatgtcactttaGTCAGCGTCAGTTGGGTCTGAAGACTACAGAGACTGCCCTCCCCAGAAAAATGACCCTATAAGTCATAAGTTAGACTGCAACCTCTAGTGGCCATAGTAATTATgacaggagcaaagcaggaagtaaggtgacgaaGTATGAAAGccccaaacaaacacaggactttcccccaggagGCCGGGGTTTGTGTgccgtttgaaaataaaatggttttttttaaccaggaagTGAAGTAATGTAACAAATGTATTGAtcttaacccaaaccatgatctttttctaaactaagtagttttgttgcctaaacctaaacaAACTGCGACTGTTAACGTTaacgacgtgtttaaaactgtgaccGTTATGTTTAGAGACGAGGACGGAAAAAGATCCTGCTGGTTGTAGCTATTTCCTGTCACAGCTAGGGGCGTTAATTTATGAAATGCTcctatgggtcgtattagagggtattTAGGAATAAACGAACTATATGATCGTATGGTTTGGAAGACTTGTTGAACTATATGATCGTATGGTTTGGAAGACTTGTTGAGGCTACAAATTTGAAAATGAGAAGAATCTGGGGGTGCGGAGTTAAAAAAGAAGTAAGCTTACTAGACATCTGTTGCCTGCTCCCCATCTCTGCTGGAGGCTACATTAGCGTTCTGCTAGCATAACATACCAGACTGCTCTGTCTGTGGTAGAGTTGCGTTGTGAATAATGTAAGCGCCGGATTtagttttatttgaatattttctaTAGATGTAAAAACTACACAGTGTTTCACAAGAAACACCCAACAACGAGAGAAAAGTCTGAAAAATTAAAACCTATTTGGTGTCGCAGAattttgatttctttatttCCTACACCTGTAATTATCGTCCCGGCCCCCAGGTTGAAAACCACTGCTTTAAAGAATACTACAGTATACATGTATTTACAGGTAAATAAAATGACACAGTATTTATAGTAGGtcaataacaaaatatatatcatATTGATGGTGAAGCAAATCTATGGTAATGTGTACTTTCTGAATATACAGCATTTTGGAGAAATACCTTATTTACTGCTCTCTCTATATTCACAGAGCAATGCACATCTCAATGTGTGATGTGTAATTGTTCTGCATTTCACAGCAAGTCTGCTTAAGTGCTTTCGCATGTCCTGTGCCTCTGTTATGTTCATTGTCACGTTTTCACTTGCATTTAGTCAATCATTGCTATAAATGTGCCATGACTTCCTGATTGAActattctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8200 True 2493 lncRNA 0.41 1 19261235 19263727

Neighbor

gene id symbol gene type direction distance location
cusr NA coding downstream 118572 19121033 ~ 19142663 (-)
xpnpep1 xpnpep1 coding downstream 140579 19105247 ~ 19120656 (-)
gde1 gde1,LOC100700294,LOC102797450 coding downstream 270749 18985103 ~ 18990486 (-)
LOC120560204 pbx4,LOC104952752,LOC103392870,LOC102788435 coding downstream 456601 18790616 ~ 18804634 (-)
LOC120562921 LOC104952754,LOC103372004 coding downstream 473377 18783925 ~ 18787858 (-)
pnpla6 pnpla6,LOC107083430 coding upstream 340702 19604429 ~ 19639873 (-)
LOC120568545 atp5h,LOC101475776,LOC102207628,LOC102296504,LOC100697434 coding upstream 376804 19640531 ~ 19644093 (-)
LOC120574931 LOC103369153,LOC102777830,LOC104922226,LOC101476272 coding upstream 381774 19645501 ~ 19647903 (-)
caly LOC103369152,LOC102207078,LOC102778125,LOC102077312,LOC102295693 coding upstream 416937 19680664 ~ 19690245 (-)
nsmce1 nsmce1,LOC102778604 coding upstream 439703 19703430 ~ 19713643 (-)
G6020 NA non-coding downstream 18917 19236193 ~ 19242318 (-)
G5984 NA non-coding downstream 210400 19050562 ~ 19050835 (-)
G5980 NA non-coding downstream 249718 19011194 ~ 19011517 (-)
G5970 NA non-coding downstream 299238 18961212 ~ 18961997 (-)
G5954 NA non-coding downstream 304604 18956407 ~ 18956631 (-)
G6052 smc3 non-coding upstream 123600 19387327 ~ 19394267 (-)
G6081 pdcd4,LOC104958203 non-coding upstream 217408 19481135 ~ 19488019 (-)
G6086 NA non-coding upstream 230155 19493882 ~ 19496128 (-)
G6093 NA non-coding upstream 285051 19548778 ~ 19549158 (-)
G6131 NA non-coding upstream 487874 19751601 ~ 19751818 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other downstream 224154 19023216 ~ 19037081 (-)
mcrip2 mcrip2,LOC104963804 other downstream 278917 18971970 ~ 18982318 (-)
G5930 LOC102307335,LOC101466373 other downstream 371015 18884968 ~ 18890220 (-)
LOC120556582 NA other downstream 1379476 17879868 ~ 17881759 (-)
LOC120556682 NA other downstream 1413198 17835904 ~ 17848037 (-)
G6084 NA other upstream 225861 19489588 ~ 19545927 (-)
LOC120569510 NA other upstream 501166 19764893 ~ 19765387 (-)
micu3a micu3,LOC100706756,LOC102779354,LOC101479276 other upstream 502770 19766497 ~ 19796522 (-)
spink4 NA other upstream 779036 20042763 ~ 20044726 (-)
LOC120574674 NA other upstream 923554 20187281 ~ 20193338 (-)

Expression


Co-expression Network