G6233


Basic Information

Item Value
gene id G6233
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 19839154 ~ 19841715 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU8474
TTTAAGGTCACTCTGAGCACTAAAAACTACATTCACCTCTATTGTACTGAAGCAAAGGCAGAAATCTCAGATACCGAAACCTATCTGCATACTTGCTACAAAAGGGTTAATGAAAAGGTTTACTTGGGGAAACCTGACAATCCTGGTCATAGGAAAGTGGGTAGTCCATATTGGGCAGTTGGCATAAGCCCgttttttacagtttgaatatCTACAGTTTAGGCTTGGGTGGCCATAACCAGACATGTCATTTTACATCAAGTGGAAAAGTGAAGTTTGCATTTTATCAAGTCAATAAGTGCAACCCAACTTAATGAGAATCACCACTCTGGCTGAAATATATTTAGAGTCTTGGGAAGTCCCTTTAAGGGACTTCCTTAATGAGTCATAGGACAAGAAAGATTTATCCATTTCAGTGTTCCATCTTGCAATGGTTGTAGACCATCCAGAGTTAAGATAACAGGTCTGTGAACAAGCTGTGAACCAGCTTGACTGATTCTTTTAGATCTACTTTTGTTGGCCATGTCTAAACTACAACTTCGTAGCCATATGACCAAAAATAAATTGACTTTCCATTCATAATACATCCTTAATATACTGTAAGTTTATTTATTCAACATGCAATCAAAACTGTCTAAAATTCAAAAGTCCTCTGAACATCAGAAGTCTTGAATACAAATGAGTCATCCGTACTGTCGACCTTAACTCCCACGACGTCATCCTAGGAGAAAAGAAAGTTAAAGTTATATTTGCAAATACAAAGACTACATTTGAGCCCTTATGCAGATTGCctttagtctggctatcaccagccTAAACTCATCTTTTAAATTGATCATTAGTCTGAGGAGtcttctgtattttctactgctaAGAGGTGGGATCAatgggcatagttcaaatgactacacaattggatagtccttcaaccaatcagaccaatgatccAGGTGACATAGCAGGTGGCCagcttgttgaatgtaaacaaaagctGCTTGGTTGCTTATCATCAGTGTTAATCATGCCCATAGcgtgccaggtggataagccagtttgtgatttgTTCCCACAGATGTGTaatggaagcaggatagatactaggtttccagcctgagctgcagggcaaaaaaatcaaaacagcCAGCAGattgggctgggtttacccagtctagaaTCCCTTGCCTTCAGAAATTGAATAAGCTTAATGCAAAGTTTTACATGCATTTTGAAAAAGGTACCTAGATGAAGTTGTATAATTAAGAAACCCATTGAGAATTAGTTTTAAATTGTCAACTTAAAATGTACTCTTAATATGAATGTAGGGAATTTGTCATGTGGTCATCTTACATCACTGAAGTACTTCTCTATAAGGGTACGAGCAGCCTGGTACACTGTTTCATTGTCATGGTTCTGCAGCATCTCAATACGATCCAGTCCTCCCAGCTCTTCAACCAACAGGCAAAGTTTCTCAGTCTCACCAAGCTTCTCTGCTGCATGAAGATGTTGTTGATGGCATCCAGTATGACAAGAATTACTTTAGTGTCTTTGACCTGCAACAAGTTAATGATAGCCTCCAGGGCCCCACACTGAACCAGATGGACCACCTGCTCCACAGTGCCCCCACTGGTGAAGTTGGTCACTGCCCACACTGCCTCCCTTTGAGTTTTGAAGTCACATTTTTTAGCTGCTCCACCAGAGGGGGGAGCAGGCCACAGGTGATGAGCTGTTGGATTTGCCTACATGGTCCTGCAGCGATGTTGGACAATGCCCATGTTGCCTCCTTTTGCACACTGGCCTTTGAGTGCCTCATCAGTTGAGGTAGGACTTTCAGGACTCCTGCATCAACTGCTGCCTGGGTCTGCAGGTCTGAGCCACTCACTATGTTCCCGATTGAGCGGAGGGCAGGGGTCTGGAGCCCAACAAGTAACAGATTTACCATACTTTAGGCAGTGAAAGATTCTTGCTTTTGACCAACTTTAAGAAAAACCTACAAGTGGTCATGCTTTACTAGTTTAAGTTGCCACTTatgcaacaatcacaacatttacattgctaaGGCAGTGATGATCTGGTCATAGCATTACACAGGAATGGCAGATCTTTGACATCTCAAATTTTTTTAAGTCCAGAATGTTTAAAGTAGAGTTGGTGCATTTGAGAACACCCTACCATGACACTAAGCTCCTTGTGGCTCATGAGCTCCACCAGCCGAGagacaattccagttttcactaCAATATCAATACGGTCATTGTCACCGTCTGAAAGGTAGGAAATTGCCCAGCATGCATCAGACAAGATGTCCTTATCGCCAAGATGGAGCAACTGGATCAGAGAGGGAAGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8474 True 2346 lncRNA 0.42 3 19839154 19841715

Neighbor

gene id symbol gene type direction distance location
LOC120569647 NA coding downstream 74851 19764088 ~ 19764303 (-)
LOC120569645 NA coding downstream 75889 19763050 ~ 19763265 (-)
LOC120569696 NA coding downstream 76908 19762031 ~ 19762246 (-)
LOC120569749 NA coding downstream 77929 19761010 ~ 19761225 (-)
LOC120569716 NA coding downstream 83385 19755556 ~ 19755769 (-)
xpa xpa coding upstream 2999 19844714 ~ 19849774 (-)
slc24a2 LOC104964368 coding upstream 12902 19854617 ~ 19871351 (-)
nansa nans coding upstream 37659 19879374 ~ 19885651 (-)
clta clta,LOC106959212,LOC106905474 coding upstream 46661 19888376 ~ 19899439 (-)
gne gne,LOC102781855 coding upstream 60965 19902680 ~ 19932408 (-)
G6131 NA non-coding downstream 87336 19751601 ~ 19751818 (-)
G6093 NA non-coding downstream 289996 19548778 ~ 19549158 (-)
G6086 NA non-coding downstream 343026 19493882 ~ 19496128 (-)
G6081 pdcd4,LOC104958203 non-coding downstream 351135 19481135 ~ 19488019 (-)
G6052 smc3 non-coding downstream 444887 19387327 ~ 19394267 (-)
G6242 NA non-coding upstream 75401 19917116 ~ 19920280 (-)
G6264 NA non-coding upstream 340324 20182039 ~ 20182294 (-)
G6269 NA non-coding upstream 354563 20196278 ~ 20203695 (-)
G6297 NA non-coding upstream 903433 20745148 ~ 20745353 (-)
G6387 psmd12 non-coding upstream 1138470 20980185 ~ 20983277 (-)
micu3a micu3,LOC100706756,LOC102779354,LOC101479276 other downstream 42632 19766497 ~ 19796522 (-)
LOC120569510 NA other downstream 73767 19764893 ~ 19765387 (-)
G6084 NA other downstream 293227 19489588 ~ 19545927 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other downstream 802073 19023216 ~ 19037081 (-)
mcrip2 mcrip2,LOC104963804 other downstream 856836 18971970 ~ 18982318 (-)
spink4 NA other upstream 201048 20042763 ~ 20044726 (-)
LOC120574674 NA other upstream 345566 20187281 ~ 20193338 (-)
LOC120566957 NA other upstream 1721376 21563091 ~ 21569059 (-)
G6592 ube2o,LOC106534564 other upstream 1866825 21708540 ~ 21709812 (-)
LOC120556502 LOC104944681,LOC103364456 other upstream 2486804 22328519 ~ 22335583 (-)

Expression


Co-expression Network