G6242


Basic Information

Item Value
gene id G6242
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 19917116 ~ 19920280 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU8490
agagcagtaaagtacgaattaaacatacaaatataagaaattgtgcttaaatgtaattttcccattacacttGTAGATGGGAGCAGACAAGTAGCCTACCTAGGATTGAAGTCGTTAAATATtgcagttatttatttattttttacagttttgacagtACTTCCACACTGCTGACATGTTTGCTGCATCAAAAAACGTAATTGTTCGGTAAAATTTATTCGGCTTTTTCACTTATTCGGCTGAAAACCGAAAGGTATTTTCGGCCGAATAATTTTGATTGCCGAACAGTTGATGCATCCTTAGTTAGAGTTATAGTTCTCGTTCTTGGTTTGGATGGCCCTTTTTATCAGTGTCACAATTGGCCCATGACAACAGTGCAACATGAAATGACTTGAATGACTAATATGCAAAGAATTTCTCTGTCTACTTAGACAGAAAACATTGGCATCCTGAATGGAAATAATACGGGTGAATGGTACTTTCATGTACATTTCTTCCCTGTGGGcactgatttctttttttcccccggaACAGGACTAATATAGGGAACGTTAACATCAAAAAGTAGGATTACACTGATGAAATGCAATGTTTCAGGTAAAAAGAGCAGATTCACTTGTTGGGGatttcctcctctctgtccccCTTTTGGGACAATGTGTCTCCAAATAAAAGACCTATATATCCCCGCGCATTTGTTAAATTGGAATTACATTGATCTAAGCAAGAGCCAAATAAGACGATAagacaacaaatacaaatacattagtttaatcAGTCAAGCATCGGAGTTTCAATACACAGATCTGTGGGATGACAAAGCACGCAGAGACTCAGTTTCTCTAGCAACAGACAAAAAGCCAGAGCCGGTCCACGTATCTCTAGACTGTCAGACCTTGTGAGCCCCGATCTATTCTTCCCCTCATCTCTTGTACTTTATTTCTTGGGCCCCCTCTTTTCTCCAGCACAGGGAGTGTTATCTTCACACAACACCCACCACGGTCGAGGCCCCTGTGCTGTGTCTTGTCTTCATTTGCTCTCACGCGAAGTGGTACATTCTGCTCCTGTTTCACTTGTTATTATTACTCAATGTACTTTGCTCGAGGCCACTGTGACCCTAACTATCTTATAGTTACGGCTTAAGCTAAATaataggggtgcacgattcagaaaatgtcatgattcgatattgatttttaggctcaagatttgaTTCAAAaaagattcacagtatgtaaatgttagggctttgactccgaaattcgttattcgaatatcattcgaatataaaaaaaaaatgaactatccaccctttgcttttttttattaataagggaaaaaattccactaattaaccctgacaaagcacacctgtgaagtgaaaactatttcaggtgactacctcatgaagctcattgagagaacaccaagggtttgcagagttatcaaaaaaagcaaagggtggctactttgaggaatctaaaatataagacatgttttcacttatttcacacttttttgttaagtacataattccatatgtgttcattcatagttttgatgccttcagtgagaatatacaatgtaaatagtcatgaaaataaagaaacacattgaatgagaaggtgtgtccaaacttttggcctgtactatacatttttatattgtttgttttacgtacagcactttgtgattttatctgtgaaaaacgctttataaataaattgtacttacttacttacagcgtaagcagggcatccgcccacccagctaatcatcatcgcatttgcaacggtgtcatcacccccacccctgctctctccaggcagctgatgtgtagccaaagcctgacacctcgtgcttcattcaaccaaattgtagtaacgtgccactttacattctcagtaacaaTAACGGCGTTGCAatgatgggaaaagtaattaattagttactgaaaaaataacgccgttagtaacgccgttatacttaaatgccgttactcccaacactgagcatcgctgcatgtcacgctagtaaagaCTAATGTTACACTTGGCAttgggtaacgttagcctaccgttagctagtagctggattaaactcgattaaagctgctgtaggtaagattgtgacgaaccaggactttgccaacaaatttgaacatctacaacttctcagtccctccctcctttctgctgaagcccaaaccgtctccgaagcccctcccacacaagggagtttgacagaactaatggcatgtcagacaatattttcaataactaaacactaacacaatgtttacTCACCAAAAGTataacgatgctaactagcaggctagcgttagccatttcagcatcatatcagaccgaccaaacgttactattatcctcaccaacatagctttgtggacttttgactactaataaccaagtgaaagataaataatttatggttattatgttacctgtcgagaagaaatgtggctacatctgcatcgttcttaagatctttaaaatcccggagctctcgccacctctgaaaagccactccaatattcacccgagtttagggaaacctttctgcagctcatgcacagggaagggggaggggagaacgctcttatatgcgtgtgtgtgcctgagcagtgattgacaggcagatagaccccctgtggccctgattggagaaaatctaccgggagcggtggaattttgccaatcgcactacaggctgtaggtggtgccagaggagctggattttttttatattacataattcatgtagttctactggaacatagggtcagtttcagcaaatatgacagaaagttagttttataagacttacctactgcatctttaaaggggtgatagaatgcaaaaccgattttaccctgtcatagttgaataacgacagtttggtgggtaaataggacatacatagaagctcaaaatcccactgacaccccttaactatgaaaatgtcatattttgaaactgcctctgaaaacgggcgaatcccaacaaagctgagttgcttgcgcaagcatctcaaaatccggaaccttaagagaacagtcacgccccaacatttacataggctacacaactg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8490 True 3111 lncRNA 0.58 2 19917116 19920280

Neighbor

gene id symbol gene type direction distance location
clta clta,LOC106959212,LOC106905474 coding downstream 17677 19888376 ~ 19899439 (-)
nansa nans coding downstream 31465 19879374 ~ 19885651 (-)
slc24a2 LOC104964368 coding downstream 45765 19854617 ~ 19871351 (-)
xpa xpa coding downstream 67342 19844714 ~ 19849774 (-)
LOC120569647 NA coding downstream 152813 19764088 ~ 19764303 (-)
tmod1 tmod1 coding upstream 65130 19985410 ~ 20006661 (-)
tdrd7a NA coding upstream 90874 20011154 ~ 20032838 (-)
stra6l LOC104958947 coding upstream 113559 20033839 ~ 20042084 (-)
LOC120565191 LOC103366463,LOC102211221,LOC102302105,LOC101484083 coding upstream 124685 20044965 ~ 20088639 (-)
LOC120556938 LOC104960150 coding upstream 194526 20114806 ~ 20126605 (-)
G6233 NA non-coding downstream 75401 19839154 ~ 19841715 (-)
G6131 NA non-coding downstream 165298 19751601 ~ 19751818 (-)
G6093 NA non-coding downstream 367958 19548778 ~ 19549158 (-)
G6086 NA non-coding downstream 420988 19493882 ~ 19496128 (-)
G6081 pdcd4,LOC104958203 non-coding downstream 429097 19481135 ~ 19488019 (-)
G6264 NA non-coding upstream 261759 20182039 ~ 20182294 (-)
G6269 NA non-coding upstream 275998 20196278 ~ 20203695 (-)
G6297 NA non-coding upstream 824868 20745148 ~ 20745353 (-)
G6387 psmd12 non-coding upstream 1059905 20980185 ~ 20983277 (-)
G6410 NA non-coding upstream 1213230 21133510 ~ 21135891 (-)
micu3a micu3,LOC100706756,LOC102779354,LOC101479276 other downstream 120594 19766497 ~ 19796522 (-)
LOC120569510 NA other downstream 151729 19764893 ~ 19765387 (-)
G6084 NA other downstream 371189 19489588 ~ 19545927 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other downstream 880035 19023216 ~ 19037081 (-)
mcrip2 mcrip2,LOC104963804 other downstream 934798 18971970 ~ 18982318 (-)
spink4 NA other upstream 122483 20042763 ~ 20044726 (-)
LOC120574674 NA other upstream 267001 20187281 ~ 20193338 (-)
LOC120566957 NA other upstream 1642811 21563091 ~ 21569059 (-)
G6592 ube2o,LOC106534564 other upstream 1788260 21708540 ~ 21709812 (-)
LOC120556502 LOC104944681,LOC103364456 other upstream 2408239 22328519 ~ 22335583 (-)

Expression


Co-expression Network