G6387 (psmd12)


Basic Information

Item Value
gene id G6387
gene name psmd12
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 20980185 ~ 20983277 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU8661
GGGTTTATTGTCTACATTGCTAAGGATACATTTAAAATACTTTATAGCCATGTTTTCATACAGCAACAACTTAAACCACAGTGTATAATCCATTCAATgcaaatgggaagcatatttagAGATCCAGTCACTGACAGAGGGGTACAAAGTAGGGAGGTGCTCATGGGTTTATTGTCAAGGTTTTACTGGATAGTAAAAAATGAACAGTTGTTGCGCATGTGCTGCAGATTTAACTCCAATTAAATGACATTGTAATTACGCTGCATTCACAGTCcgccaatatactgtatattcaaaaACATTCCCAcggaaaggaaaaacaaaacaaatatgaaCCAAAACATGAAATAATGCACTATGAGCTAGTTTCACTGCAGGTTGTGGATCATCTCCTCCTTGGCAATGAGATGTGTGGTCTTGTTGACCAGAGACATGAGAGAGTTGAGTTTGTGCGACCAGTCGTTGAGCAGGTCGTTGGGGTCTTTAGGCCTCTGAAAGTTGATGATGCCAGCCAGCCGGTCGACCTTTGCATAGATGGTCTTGTTTACAACTAGGCTGGAGAGGAACTCCTCCGATTCATCAATAGAGAGGTCAAGGAGTCCAGCCATCCTCTTCATTGTGATTCGGGTGTAATATTTGGCCATTATTCTGATGTGCTCCACCACTCTGTTCTTCAGGTCCTTCCACCTTTTCTCCCCCTCTTCTGAATAAGAGAAGACATCTGTGGCAGGGCTATCAGGTGAGCCCTCTCTCAGCTCTTTCCCATAATCCTCCACCAGGGAAGACCAGCGCATCAGCTCCATAGTCGTGAACTGTTTCAAAAGGTCCCTAGAAATGGGGGAGGAATACAGTGAAAATCCCCTCTGTCCACACCTGGCTATAGTGTTTGCATGTGATGTCAGTATACATGAAAGTGGCTATGATCATTGCCCCGGAGTAGGAAACACACAGCAGCCTCTTTTCACACAAAAGTTAGGCAAATGTGTCACTTTCTACGTGCTGCATACATGTGTCAGGAAATTCAGTTGCTGGCCACATTTCAACATCTGCAAACACAGACTAATGCTGTACAGTTGGTTGTTGATTCAGATGGCCTttactttttaaagatttacgtTTGTTTTTCTCCTGGTAACACACCTCTGTCCATTCATAGTAGCAAAATGCTCTCACGTAATGGTGTGTAAAAGTGCTGTAATTACTGTACATTTATACTCCATTGAGAAATTTGGACCCACGTCATATCAGGTCAGAGGACCGTTAAATGTATGGTAAAGCCAACAGGCAGAAGAGCACAAAGTATGTCTTACTTGTATTTAGGGATTTCTTCCAGTTTCTTGTCCTCACTGATTCTGTGCACGAGGTCTGACTGCTCATTGTCGTAAGGGGAAAGAATCACGTACAGCACCACACTCTTCAGGGCCTGAAATACAAATGCACTCATGgcttttatagcaacacacaaAGTCAAGTTTTAAATTAGATATATAGCGTTGTCTTTttagaatcagaaatactttattgatccctggGTGGAGGGGGACCCACCAGCAAACTATGCTGCGATAGTCATTgttcatagaaaaaaaaagcattgatcAAAAGGATGATGTTCACATCCTGGGTATGTGCTCAGAGGAATGTCCTTATGAAAAATCCCACCATGAGCACTGTTTGTGCAAAAATCTAGATTTCAGTACTAAAAGGCAAACCGCTCCTTACTAAAGAGTGAGAGAGTTTACGCTTATTAATTCAGGGTTGGTACAGTCATTTATTGTATTTCCAAACATATTGTTTCTTCTTTAACCATGGTACTGTGCTCCAGCACTATGGCAGGAAAACAGAAAGGAAAATGGTACAGCACAATTCCTTTTGTTGCTGCATTACATTTTATCATAACCATTTatcaaaaaaaggaaatttcAGCAGTGTGAATTCCAGACACTAGTAAAAAACAAGCACACTTTCTCATTGACTACATGTTTAATACTATGTAATAGTATACTGTGGCCTTGAGAGAAAGCCCATGTACCTGTTGCCACTTGCTGCTGTCCTCCAAAATACAGGGTGTGTCATAGATAGCCCGGTAGTGTTTGCAGATAGACAGGTAGGAGCCCTCGTGCTGGTCTACCTGAATCATCAGGTTGTAGTACTTCAGCTTGGACTCCT

Function

symbol description
psmd12 Acts upstream of or within brain development; cranial skeletal system development; and kidney development. Predicted to be part of nuclear proteasome complex and proteasome regulatory particle, lid subcomplex. Predicted to be active in cytoplasm. Orthologous to human PSMD12 (proteasome 26S subunit, non-ATPase 12).

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8661 True 2169 lncRNA 0.41 3 20980185 20983277

Neighbor

gene id symbol gene type direction distance location
LOC120557739 pitpnc1 coding downstream 12078 20871820 ~ 20968107 (-)
LOC120557145 NA coding downstream 132519 20846724 ~ 20847666 (-)
LOC120571719 NA coding downstream 135092 20842081 ~ 20845093 (-)
tppp2 LOC103374906,LOC101485391,LOC102784423 coding downstream 152262 20822497 ~ 20827923 (-)
LOC120565775 sgcz coding downstream 358387 20213717 ~ 20621798 (-)
LOC120552602 cacng1,LOC106534954 coding upstream 76171 21059448 ~ 21073939 (-)
LOC120565978 NA coding upstream 94595 21077872 ~ 21078676 (-)
LOC120565189 cacng4 coding upstream 98828 21082105 ~ 21096721 (-)
LOC120568141 cacng5,LOC104927116,LOC103369746 coding upstream 127566 21110843 ~ 21129704 (-)
prkcaa NA coding upstream 155409 21138686 ~ 21294921 (-)
G6297 NA non-coding downstream 234832 20745148 ~ 20745353 (-)
G6269 NA non-coding downstream 776490 20196278 ~ 20203695 (-)
G6264 NA non-coding downstream 797891 20182039 ~ 20182294 (-)
G6242 NA non-coding downstream 1059905 19917116 ~ 19920280 (-)
G6233 NA non-coding downstream 1138470 19839154 ~ 19841715 (-)
G6410 NA non-coding upstream 150233 21133510 ~ 21135891 (-)
G6471 NA non-coding upstream 336741 21320018 ~ 21320682 (-)
G6483 bptf non-coding upstream 375321 21358598 ~ 21362121 (-)
G6501 NA non-coding upstream 475627 21458904 ~ 21462650 (-)
G6565 NA non-coding upstream 667331 21650608 ~ 21657734 (-)
LOC120574674 NA other downstream 786847 20187281 ~ 20193338 (-)
spink4 NA other downstream 935459 20042763 ~ 20044726 (-)
micu3a micu3,LOC100706756,LOC102779354,LOC101479276 other downstream 1183663 19766497 ~ 19796522 (-)
LOC120569510 NA other downstream 1214798 19764893 ~ 19765387 (-)
G6084 NA other downstream 1434258 19489588 ~ 19545927 (-)
LOC120566957 NA other upstream 579814 21563091 ~ 21569059 (-)
G6592 ube2o,LOC106534564 other upstream 725263 21708540 ~ 21709812 (-)
LOC120556502 LOC104944681,LOC103364456 other upstream 1345242 22328519 ~ 22335583 (-)
LOC120565362 pik3r6 other upstream 1682098 22665375 ~ 22692333 (-)
G6881 usp43,LOC104947996 other upstream 1998648 22981925 ~ 22988500 (-)

Expression


Co-expression Network