G6880 (usp43)


Basic Information

Item Value
gene id G6880
gene name usp43
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 22972882 ~ 22973326 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU9328
TGCTCATATATGTAAAAGTGTATTCACCAGATGTTAGTATTTTTAGCTGATATTAATATAtcaatttattttctgttaacGATTTAACTAATAGATTCATTGTTTAAGCACGTTCGTTCATTTGACAATGTCGCAAAGAAAACCTTAAAACAACGAGTTACTACATCGTAAATAATGTATTTTACCACCCAATTCCATACCAGTATAATGTCCTCCGTGCATTCCTCCATGGTGGTTACACACAGCGTAGAGGTCATACAGATAGTCGTGGGGGAGGATCATGTCAGCAGGTTGGTGGTGTTGGCCTGAAGCCAACTTCCAGGGCGGTGGCCAGGCCCCTGAGTTCAGGTTCCTCATACTCTGACTCCTCTTTACCACATGGGGGGCCATGTCCAAACCAGTCAGGGGGAAACGCACCAGGGTTGACAGCTTGTTCCTCCGCTCG

Function

symbol description
usp43 Predicted to enable ISG15-specific protease activity. Predicted to be involved in translesion synthesis. Predicted to be located in nucleoplasm.

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 43

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU9328 True 445 lncRNA 0.58 1 22972882 22973326

Neighbor

gene id symbol gene type direction distance location
stx8 stx8 coding downstream 138418 22785495 ~ 22834464 (-)
pik3r5 pik3r5 coding downstream 252067 22692787 ~ 22720815 (-)
LOC120558762 LOC108242699,LOC106536899,LOC103354898,LOC100703987,LOC103383580 coding downstream 307669 22654181 ~ 22665213 (-)
si:dkey-45d16.4 LOC104950130 coding downstream 331138 22635884 ~ 22641744 (-)
LOC120558725 LOC103354901,LOC103383579 coding downstream 337942 22619670 ~ 22634940 (-)
mchr1a LOC103354888,LOC104947992,LOC102295449,LOC102791021 coding upstream 20542 22993868 ~ 22997980 (-)
LOC120561952 NA coding upstream 197481 23170807 ~ 23173617 (-)
LOC120546964 NA coding upstream 446954 23420280 ~ 23431271 (-)
znf207b znf207,LOC104947983,LOC103374438 coding upstream 457611 23430937 ~ 23438268 (-)
rhbdl3 rhbdl3,LOC102785192 coding upstream 465505 23438831 ~ 23501859 (-)
G6879 NA non-coding downstream 38991 22924831 ~ 22933891 (-)
G6834 NA non-coding downstream 319096 22651532 ~ 22653786 (-)
LOC120562974 NA non-coding downstream 368929 22601388 ~ 22603953 (-)
G6762 ddx39a,LOC103150096 non-coding downstream 647499 22324550 ~ 22325383 (-)
G6764 NA non-coding downstream 706890 22264384 ~ 22265992 (-)
G6907 LOC107382332,LOC106515271,LOC102218172,LOC108242722,LOC103383557 non-coding upstream 79993 23053319 ~ 23058150 (-)
LOC120556418 NA non-coding upstream 157128 23130454 ~ 23135775 (-)
G6947 LOC104947985,LOC103354881 non-coding upstream 276869 23250195 ~ 23253876 (-)
G6986 NA non-coding upstream 434951 23408277 ~ 23409202 (-)
G6993 NA non-coding upstream 454186 23427512 ~ 23429145 (-)
LOC120565362 pik3r6 other downstream 280549 22665375 ~ 22692333 (-)
LOC120556502 LOC104944681,LOC103364456 other downstream 637299 22328519 ~ 22335583 (-)
G6592 ube2o,LOC106534564 other downstream 1263070 21708540 ~ 21709812 (-)
LOC120566957 NA other downstream 1403823 21563091 ~ 21569059 (-)
LOC120574674 NA other downstream 2779544 20187281 ~ 20193338 (-)
G6881 usp43,LOC104947996 other upstream 8599 22981925 ~ 22988500 (-)
G6924 NA other upstream 115174 23088500 ~ 23164937 (-)
G6943 NA other upstream 240530 23213856 ~ 23242290 (-)
G7065 NA other upstream 599379 23572705 ~ 23573049 (-)
LOC120557242 NA other upstream 738501 23711827 ~ 23720750 (-)

Expression


Co-expression Network