G6881 (usp43,LOC104947996)


Basic Information

Item Value
gene id G6881
gene name usp43,LOC104947996
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 22981925 ~ 22988500 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU9329
AGGCAGAAACTGTTGTTTTTACAGTGAAAGCATACTTGTTACACCCTTGCCACGATGCAAAACATGGAATACACTGCATGTGAGTTCAGTTAGATACCTTGGCATTCAACTCCACAGGTTGACAGCATGATAATAAGCTTATTTGTTCActcattttctctctcacacacacctgcacagagTTCCAGAAATATATCCACAAATGTGGTATccacaaatatatttacagaTTAGTTTTTAATCAAATTTAGAAAAATCGCATATAAAACCATCTTTAATCCACATTTCACAATACATCATGTTAACACAGCAGTGCTCAGTTTTGGAAGAGTATGTTcacattgtgtgtatgtggccaAATGTTGATTGACCcatgcaacaacaaaacaaacatcaaaCATATACATGAATAATTCAATACAGACTTTGTGTCCctataattcaattttattttacttcAGCATTGATCtgaatttatttcatttgtatcaGTGATTATCTGCTACTTCTGAATGACAGGACAGAGACTTTGGCCTTATGTTTTATACTAGATGAAGTTTGTAGCTTttcagaaaaatgtaaaaaaaaaaaatgaacgtaATCGATTTTGGCCAGTGTCTAAAATGATTTCTTCTGAACTGTAATCATAACCATTATACTAATAACATAAGGGTCGCTCAGATATATAGAAGTCAAAGAAACTGTTGGTTGAGTTTGAGTTTTTCATTTTCCGTCAAATActtctttcttccttttggTACAATACACTAACAGTATTGTTTTCCCATACATTAAAGAAAAAGCACACTATTTCAGTATGAGCATCACTACAGACCAGATTCTAAAAAGATTGATTATTTTGTTTGGTAATAGAAAGCCACAGctgttttttgtcactgttgGTAGAGGGGAGCTTGGCTATTGACTGCACAAGCTGCAATGTGTTATTATTTGTGATTGTGATGAAAGTGATTGCAGCCTTGCTTTTGTAGAATGTGCTACCACCCAATCTCCGATTGAAAATGGCAGTCTTTGTAAATCCATTTATAAGGCTCAGTAAACTCATAGTTGGGGACAGTCAATTAGCAGCCGCTGTCAAAACAAAGTCACCAACAATCCCTCTTGACATTCTAAGGAGAAAACAAAGCATCCAATTTTGTGGTTTTAACAGTGTGTTCAATGTTAAGTTTCTATTTGGAGAACAACTGTTGTGCTTGACTTCCTCAATATCTGCCCATGTCATATGTTTTACTAACAGAATTTCAGAGTCAAAATTTGGGGATCAACACAAATGAATAAGACATTCAATTATTATTGCTTATAGTCACTTGAGACTCGCTCCACTCGTAGGAATAAAGTAAAAAGCCTTTTCCAACCAACAGCTTCAAAATCGGGGTTATAATGTACCAGACAGTGTATGATTATCTAAAGCTGTGACTAATGTCTGCAGGAAGATTAATTCATTTTCAATAAAACCTTTTTAGATTTGGACATGAAAAGAGTAGCGACATTCGGTAGCTATTAAAGGATAGTCATCCTGCTCTGCAAAGTGAGTCAAACTGAACAAATGTGAAACGATGATGCCATCTGTGCACAGACAAATTTGAAAAAGTCATTTCTAAGAAGATTTATGGGTGTTGTTGAAAGTTTCTGTACACTGTAGGGGCAATTCAAACATtcacgcagcggccgcgggttcgactcttCCCTGCGGccgtttgctgcatgtcattccccccctctctctcccccttcttgtcttcagctgtcctgtacaaataaaggcctaaatgcGGAAACATGAGAAAATGTTAATTCAAGTGTTCAATGTGTACATAAAGCAATGAAGCGATGAGCTACATACGGATGAACTGCTTTCATAATAAAGTCTGCCGCTTTTGATTTTAATCAATAAATATGCTTCCCAATAACATGTTTGTTTATTCTGAAGTGTAACTGTGATACTGCTTGGTACAGTTTGTCTAGTATTAATATTGTGAGATCCAATTGTTGCAATGTGACAAGCTTTAAACAAAACACAGCatttgaaacaaattaataaaaattgATAAATCTCATGTGGGGTTATTTTGTATATAGACTGAGTCAGTGGAGATTTCCAGGGCTGATTTTATGCTTTTGTAAACAGAATAAAAAAGCACGATATTCAATGTCAAATATTATACATAAGCATTCAAATGTGCTACACCACGACATGGCAGAGTTCAGTTGATGTTTTTTACATAGTTGCTAGTCTTACaatgccagacctatctccacagcgctgtggagtaaggtctggctctaCCACAAATACtttccaggataggagaaaaaaatgctctgggttgttggtgttcctttaaaccaatcacaatcgccttgggtggtgctaagctaCGGACGCGGCCAGGGTGGCTCTGCAACATAGTCTcgcgaaggaacttgttttggtggaacatttgcaccccgcaaaagaaaacggcacatacaatattaaatggaaagtgttcacacaatacagtaacgtgagctaaaTTTGCTAAACATAATtttctcttaccagtgtattgcaGTGTGTATTTCGTCCATAGCGatccccaccaatcagtcccaataCATCCCaattagatagtaaatgccgtaaacacattctttgtaaatctttagaaTAGTTCTCTGAAAAAAACAAGCTgacttgttgcacgatccaaattttctacaaaactttccattttcagtgtgtagcttgctagctcaaaggttCTTGTCGTTTCCCGAATGAACAGTTTGAGATCGgcaacacagagagcggaaggtgagggatgtCTGGCGGAACATCCGGCGGGGCAATAAAAGGCTGTTGGTATTGTGTTTGAATGCTAGACAGTTTTCTTAGTTTACTTGAATGCAGCTGAAGGTCGCACATCTCAGCAGATGACGAACAGAAGCCATAGAGAAGGCTTACAAATGCTGAGGGTTATTCAATGTCCTTGATCTTTAATAACAAACTGGATTATGAGGGTGAAAACACCATCAACACATGTTGACGACTTAGTTGTACACAGCTACAGTATGTCTGAGGGTGATATGGTGCTTTTACTATTTTTACTTATATATCTTAATGAacttatattatattgtatgtttTCCATTACCACCTACTTCAGGGTCAATATTCTAATGTGTTTATTGTTGGTGAGAAGTGAGCAAAAGCAGCTTCCCAACATAAATACAAAGATAtgtaacatatacatataaccCTGTCAGTAAATTGTTTGCAAGATGACAGATTTCTTTTAAAACAGCTATGCCCTTGAGTTTAGCATTAGCAGTAGTGCTATTTACTTAAGAGATCCCCTTATGTGTAAAGTGCAAAAGAAATCTCAGCACTGTGCAAATATTAATGAGGGGCCATACATGTGTAGAGCCTGAGAAGGCATCATGGGAAATATCTGTGCACATACAACATTGAAATATCACTGCAGCAGCATATGAGGAGGTCCAGCCAGCATGTTATACCGTCATAGTTTGACCAGAATAAGAAGCAGGCTAGTGAATAGTCACCAATTGGGTCACTAAGTATTACATACAAGTAAAAAAACTAACCATGTAGATGTGAAGCCCATGCATATTGAAAAAAAggtagtaaagtaaaaataaaacagattgaactaaattaaattaaatatgctTGCATGTGCGTCCATAGAGTCCAAAATAAATGTTGCAGAGTATAACTCAGGCTCACAGGACATAAATACTGTCATAATTTATCATCATACTCTAACCTGTGAAAAGACAAAGTGCACAGAAAAACCTTCATTATGCCGGATTCACAAAATAACTGCAACATTACAGTTCTCACTGATTAGTATGGAAGATTTAAAATCACAACCTTGGGGGTGGGGCCATGGGCGGAGCTTAGTGTCAGAGggactgtacattttattacattacatttgtaACAAGGGATGGATTGTGCTGAACAAACAGACACTTAGAGGGATCTTCTTGGCACATTTCTCAGTTAGTGTTGACAGCTAATTAGTACTAGTAGCTTGTGttaactaaaagaaaacacacagcaaatgcataaataaaaagaaaatacatatatCTGTATGTAGATTGTTCAGACTAGGCATAATTAAAGGAAAAACCCCACCCTAAAACACTGACACTCTTTGTATCTTGCATTTTAGAATCCATTTTGGGGTTGTGTGGAGTATCTTTCTTTCCAGTTAACTGGCCAGATGCGGTCAATATCAGGGTGCAATACTTCAAGCTCTGCTACAGTGAAAATTGATTGTAAAAATGTATGTCAGATTCTTGTGAAAACCCCTCACAATCAAAGAGAAAGGAGTATTTTTTAGACAGTTACGTACAACCACAGCTTCAATAAAACAGCATGAGATGCAGCCACATTCTGCATTCCCATATCCCACAGCTACAGTAAATGCAACGGCTTCCATGACACAGGAAATCATAAACTAGGAGAAATAGAGTGGTTACACCAAAATTGAAGATGAAAATAAACAGCATGAATGTATTAAATATGGATAATTGATGTTATATAAAAAGGTGCAAAACATTTTCTAAGAGTGGATATTGCATTAATATTACACTTCACAGTagacaaataaagtgttacttGTCCTTATAATCTTTAACATGGAATAAACAACAGCTGCAATCTGGGTCGCATGGGGACATGTCAATGCTTTCTAaaaacactgctgtgtgtgtaaagtCATCCtgaattttaaataaacatttaacagattaaagatacaaaaataaaattatgtTAATCGCAAACTGCAGCCTCAAAACACAACCATTAATCAAGTGGACCCATTACATTCTTATAAATGAACACAATCAGTGTGACACACAACCAAGATAATTCAAAATGTAGTGATGAATTCAGACACTCACACTACAGTAATAAGACACAAATGCGGATaacatgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagatttctTGCCTCCAGTGCTAAACAGACAAACTCATTGGTCTAAACTGCATATTAGTTGCTCAGGCACTTGTttgaagtaataaaaaaaatgaatacaaatggACTCCGTCTGATGTTTGATGGATCTCATTTCATTCTTCTCTTTATATCCCAGCAAGGATCCTTCCTTTACTCCGTGTCTCTCAACTCCATGGTGCAGGCCACTTGAGCCAGGTCATTCTCCGGGGACAAAAAGGCGTATCACTCTGAATGGAGCTCTATTGCTTTGATCTCTGAGACTGGACATCATTCACTTTATGACATATAaaaggctttgtgtgtgtgtatggaatGGATGTGTTGAATATCTCTGTGTCAGAAGCTGGACTCTGGGACTGTCCTTTTGCGTCCCAGCGAGGTCGTGCTGTAACGAGTCCTCTGCAGGGTGCCGTAAGACGGTTTGTCTGCTGTCAGGCTGCGTGATGGTGCTGGGGCTGTAGACATCCCGTTACGATGCAGAGATGCTGTCCTACGCATGCTATGCTCTGCTTTGGTGGGGATGTTGGAGGAGCTCTGGGAGCGCTTGATTTCCGCCGTGGTTCGGCCCACCTTCCCGTTTGACAGCTCATCGCCCAAGTGGCCAGAGCCATTAGACCTGCCTCCTTCCACCCCagttcctcctcctgctgctccgTTAGACAGTGACAGCCTAGAGAGAGTCCTCCTGCCTCCTTCCTCAACTCCTCCTTTCCCTGACTCACCCTCCTTGGACTTCCTTGAGTCCTTATCCTTCTTAAGGAAGTTACCTTTAAAGAAGGAGGAGAGCAGTCCCTCATGGCTCTTGGGTACTTCTCCTTTCTTGGTCTTAGAGTTTCCTTCATATGCACCGCGGTGTTCCCTATCAGACCCTGTGTCCCCTTTTTGTCTCCTCAGGGTCCCATCATGAAGGCTAGGAGTGCTGTAGCTGGGCTGAACTCCAGAACTGGAACTCCTTTTTGTCTCAGTAGTATCCTGGGAAGCTTTGGAGGAGCTTTGCTTCCTGGCGTCCTTCCTCCTGGTGAGGGTGTTACTGCTAGAGCTACTGCTGATATTGGTGGTGCTCTCATCTCTTGTCTGGCTCCCCTTCCTGCGTCTCAAGCTGGCGGTCTTATCTGATGACCTCCTCTGGCCCTCTGGGACCTGTGGGGACTCAGGTGGCAGCTCATCCCCTGCCTTATTCATAAAATGTAAGCTCCCAACACTGGAAGATCGGACATTGGTTGAGGACCGGCCCTCAGCAGCTGCCTTTGTGATGCGTGGCTCGCTCATCAACGTCACTATTGGATCCTTTGTGCACCTGGGCCGCCGGCCAGATTCCAGGTACTGTACGAGCTCCACAGGGGCAGGATCTTGAACAGATGGAGGCACTTGTTCAGGTTTACGTATGTCCTTTGAACCAAAGGACCAGCGCAGGGGAAACACTTTGCTCAGGGTGTCCCTTGGCTTGCTGGGGGCTCTCATGCTCACGCTGCGTCCCTGAAGACCCCTGATAAATGGCCTGCTCTCAAACCCC

Function

symbol description
usp43 Predicted to enable ISG15-specific protease activity. Predicted to be involved in translesion synthesis. Predicted to be located in nucleoplasm.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU9329 True 6576 TUCP 0.40 1 22981925 22988500

Neighbor

gene id symbol gene type direction distance location
stx8 stx8 coding downstream 147461 22785495 ~ 22834464 (-)
pik3r5 pik3r5 coding downstream 261110 22692787 ~ 22720815 (-)
LOC120558762 LOC108242699,LOC106536899,LOC103354898,LOC100703987,LOC103383580 coding downstream 316712 22654181 ~ 22665213 (-)
si:dkey-45d16.4 LOC104950130 coding downstream 340181 22635884 ~ 22641744 (-)
LOC120558725 LOC103354901,LOC103383579 coding downstream 346985 22619670 ~ 22634940 (-)
mchr1a LOC103354888,LOC104947992,LOC102295449,LOC102791021 coding upstream 5368 22993868 ~ 22997980 (-)
LOC120561952 NA coding upstream 182307 23170807 ~ 23173617 (-)
LOC120546964 NA coding upstream 431780 23420280 ~ 23431271 (-)
znf207b znf207,LOC104947983,LOC103374438 coding upstream 442437 23430937 ~ 23438268 (-)
rhbdl3 rhbdl3,LOC102785192 coding upstream 450331 23438831 ~ 23501859 (-)
G6880 usp43 non-coding downstream 8599 22972882 ~ 22973326 (-)
G6879 NA non-coding downstream 48034 22924831 ~ 22933891 (-)
G6834 NA non-coding downstream 328139 22651532 ~ 22653786 (-)
LOC120562974 NA non-coding downstream 377972 22601388 ~ 22603953 (-)
G6762 ddx39a,LOC103150096 non-coding downstream 656542 22324550 ~ 22325383 (-)
G6907 LOC107382332,LOC106515271,LOC102218172,LOC108242722,LOC103383557 non-coding upstream 64819 23053319 ~ 23058150 (-)
LOC120556418 NA non-coding upstream 141954 23130454 ~ 23135775 (-)
G6947 LOC104947985,LOC103354881 non-coding upstream 261695 23250195 ~ 23253876 (-)
G6986 NA non-coding upstream 419777 23408277 ~ 23409202 (-)
G6993 NA non-coding upstream 439012 23427512 ~ 23429145 (-)
LOC120565362 pik3r6 other downstream 289592 22665375 ~ 22692333 (-)
LOC120556502 LOC104944681,LOC103364456 other downstream 646342 22328519 ~ 22335583 (-)
G6592 ube2o,LOC106534564 other downstream 1272113 21708540 ~ 21709812 (-)
LOC120566957 NA other downstream 1412866 21563091 ~ 21569059 (-)
LOC120574674 NA other downstream 2788587 20187281 ~ 20193338 (-)
G6924 NA other upstream 100000 23088500 ~ 23164937 (-)
G6943 NA other upstream 225356 23213856 ~ 23242290 (-)
G7065 NA other upstream 584205 23572705 ~ 23573049 (-)
LOC120557242 NA other upstream 723327 23711827 ~ 23720750 (-)
si:ch211-207j7.2 NA other upstream 745864 23734364 ~ 23746031 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G40396 abhd14b non-coding NC_053115.1 CM020912.1 19917904 ~ 19919632 (-)
bowfin (Amia calva) AMCG00013317 NA misc CM030125.1 CM030125.1 28007514 ~ 28072799 (+)