palm3


Basic Information

Item Value
gene id palm3
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 23772856 ~ 23811021 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU9657
GTGAGAGCCGCTTGCCGGGacggtttcacttttttttttatcaatgccGCGACCTAGCTTCTCCTTAAAATAAACTTTACTCTACTGTAAAAGTTTGATAAACTTAACAACGCGTCGTCCGGTGTTCATGTCCACGAGCGTAACATTGTTAGGAGTCAGCTCAGCGCAGAGGCTACTCAGGTGTTCAACTTCACGGAGAATTTTGTGTCGtattttagctttcttgctAACTATTTACTAATTACGCTAACGTTAGAAGCAAAACTCCTCTCCGTCTTTTTTGTCGTGTCAAATATCTCCAGTTTTCTACTTGGTTTCGTTTTCCTCCTTCTGCTTATTGGACTTAAAATATCAAGTAGCCAAGTTTGAACAGGTGCCGGGATGGATGAGACGGAGAAGTACAATCAGCGACTGAAGGCCATTGCTGAGAAGCGTCGGCTGCAGGAGGAGCAGGACAGAGCCAGGAGAGACATGGAGGATGAGAAGCTCAGACTACAGCAGCTCAAGAGGAAGTCTCTGAGGGACCAGTGGCTGATGGAGGGAGCTCCCTTGTCCCCAACCTCCCCGGACTCCCAGAGCCCCCGCTCCCCTCTTTGGGGCGCCCAGGAGAATGAAAAGCGCATTGacaaGTTGCAGTCAGAGAGTCAGCagttggaggaggaggaagagaagctgAAGGAACAGATGAAGCATGGCCAAACGGAGGCAGTGAAAGTGGCAGAGGCTGGAGCAGAAATGGTTGTGCAGAACGGAGACAACAATGCAATAGGTTTGGATAAAGTAAAGACAAACCAAAGCGCACGACTGGATGAAACCGCAGCTGTCCTTACCAATGGCGGAGGAGACTTGGAAGCAGACCCCA
>TU9658
GTAATACTTTGTTTCTGatttgtaagtaagtaagtagctAGCTAGAGCTTGATCTGTAAATCGACAGCCTGATATCGGCCGTATTAGcttttataccatggtctgggtgaatactcgattctgattggctgcagggtgttcataaaaaaagtgatgtaggacacccaGCTACTAAAGGAgtttcggtgaaactgactgtttattgttcaaaatgaatgcgctaTCTTGTGGATCtgttatttccaactcgtcctctgaacaccacaggatggcgctaacacacaagctgcaagaaAGGAAGTCTCTGAGGGACCAGTGGCTGATGGAGGGAGCTCCCTTGTCCCCAACCTCCCCGGACTCCCAGAGCCCCCGCTCCCCTCTTTGGGGCGCCCAGGAGAATGAAAAGCGCATTGacaaGTTGCAGTCAGAGAGTCAGCagttggaggaggaggaagagaagctgAAGGAACAGATGAAGCATGGCCAAACGGAGGCAGTGAAAGTGGCAGAGGCTGGAGCAGAAATGGTTGTGCAGAACGGAGACAACAATGCAATAGGTTTGGATAAAGTAAAGACAAACCAAAGCGCACGACTGGATGAAACCGCAGCTGTCCTTACCAATGGCGGAGGAGACTTGGAAGCAGACCCCA
>XM_039794043.1
GACAGACAGACTCTCTATTCCTCCACACAGACGGGTTTATACACGAAGGGAGGCGGTGTGAGAGCCGCTTGCCGGGacggtttcacttttttttttatcaatgccGCGACCTAGCTTCTCCTTAAAATAAACTTTACTCTACTGTAAAAGTTTGATAAACTTAACAACGCGTCGTCCGGTGTTCATGTCCACGAGCGTAACATTGTTAGGAGTCAGCTCAGCGCAGAGGCTACTCAGGTGTTCAACTTCACGGAGAATTTTGTGTCGtattttagctttcttgctAACTATTTACTAATTACGCTAACGTTAGAAGCAAAACTCCTCTCCGTCTTTTTTGTCGTGTCAAATATCTCCAGTTTTCTACTTGGTTTCGTTTTCCTCCTTCTGCTTATTGGACTTAAAATATCAAGTAGCCAAGTTTGAACAGGTGCCGGGATGGATGAGACGGAGAAGTACAATCAGCGACTGAAGGCCATTGCTGAGAAGCGTCGGCTGCAGGAGGAGCAGGACAGAGCCAGGAGAGACATGGAGGATGAGAAGCTCAGACTACAGCAGCTCAAGAGGAAGTCTCTGAGGGACCAGTGGCTGATGGAGGGAGCTCCCTTGTCCCCAACCTCCCCGGACTCCCAGAGCCCCCGCTCCCCTCTTTGGGGCGCCCAGGAGAATGAAAAGCGCATTGacaaGTTGCAGTCAGAGAGTCAGCagttggaggaggaggaagagaagctgAAGGAACAGATGAAGCATGGCCAAACGGAGGCAGTGAAAGTGGCAGAGGCTGGAGCAGAAATGGTTGTGCAGAACGGAGACAACAATGCAATAGGTTTGGATAAAGTAAAGACAAACCAAAGCGCACGACTGGATGAAACCGCAGCTGTCCTTACCAATGGCGGAGGAGACTTGGAAGCAGACCCCACAACCACCCcaccaccacaaaaaaaaaaaaaaaaaaaaaatcacccccccaaaaaaacccccccGGCGCCCCCCCTGGGTGTTTCTGAGGCAGAGCCTGGTCGGGTTCTAAATGCCAAGATTAatggggaggaggaagaagggacCGTGGTGATGAGAGCAGAATGTGTCATCATCACAGATGACGGGGATGATGTGCCGAAGGATCTTGCACCACAGGAAGATCAGCAGGAGACCATGCAGTCAGAGGAAACCCCTCTGCCGAATCCAGAAGGAGGCCAAGATGGAGGGGAGGCTGTGGAGGAGGTAGTAGAAACAGAAGCCGCTCCAGAAACTTTCACACAACCAGAGAAGAGTGAGGCAACTGAACGCATTGCGGAGGCACCACCAGCAACTGGAGATGGAGACGTGCAGCGTGGTGCGAAGACAAACGAAAATGGAGATCGAGAGACGAAAACTGAAGGACAGCACAGACAATGGGAAGACCCAGCCTCTGTGCAGGTGCAGTCCCCAGCCAATGCTCCAGATGGCACTGCAGTGGTTTTGGTGCCAGTCTACTCTAAGGTGCAACCCTCTACTCTCACCCTCGAACTAGAGGCTGAGGCTGAAGCTGAGGCAGCATTAAAAGCCCAAGACCCTGCCCCCATGCCCGGCCAGTTCCAGGAGGTGCCCCTGGCCGATCCCAAGGAGATCCAGAGGACAGAGGCAAGGCCCGAGGAGAGGGAACCCCTTCTGTCACAGGCCAAAGCCCCCGACACCCAAGCAaagccagcagcagctgccagcacagagacacacagcccGACCAGGGCTAGCCAGGGAGAGGAGACCCAGGCACCCAAACACAAAACCTGCCAGTGCTGCTCTGTCATGTAAATGCCCTCTCTGTACATTCATATCCACTCTCCCTTTTTACTCTGTCCCTCTGCTCTTCAATTCATGAGACACTCCTTCCCTCGTCTCTTTGTTTTATGCACCCATCCTTTTTCTGTCTTCAAGTGACTTAATTTTCCTCCCCTACTTTCTGTCCTCATTCCTTGTATTCATCCTGAATCCCACTCTTAAATTTGGATACTCCAAAGGAAGTGGGCTCTCGACTCCAACATGAagacagggtggggggggggcatggaCTGGACTTATTGGTGTTTTAAGTGCCTTAAGGAGCTCTATACCCATAACTACACTTTGAAATTCTTTTTTCACACAAtgtggacaaaaacatttttttttttaaacattgtttgAGTTTGATTTAATTTTCCTGGTTAGCAGATGAGCCAGCCAATCTACATAGGATCATAAAACCCACATATTAAAGATGTATTATTTTAAACTGTTGTATCTACATGTATAATTCATTGGGTAATATTCATAATCTTAATATGAGATTCAACATCCAAAGATCTGGAAAGGTTCAGAGAGGATATTCTTCTAATTGAATGACTATAACGCTGAATTAATTTTTGATTTTGGACTTTTGTTAAAATACTTTTAATCCAAGTATAGGGCCTGAACATTTTATTCACTCTGTAATACACGTTTTGACAATACACAGACTGATGTATGAAATGGCCTTTGTTTATTAACCACAGTGAATATTTTGTGGGATGTTGTTAGATTTAAAagagaaattattttaaaatgcctGAAAGTATGCATTTGATATTTTTATCAGATGTGCTTTTGAAAGAGGGGTCCCAGAGCTCCTGACGTAGCTCTGTGTATGGCTGTATTAACTGTATACAAAAACGTGGACTTGAGAGTGTCTGAGATGTCAGCTTTGACATGATTGATTAATGGTTTAATGATTAAACTGACATTTGTGATACATTG

Function

NR:

description
PREDICTED: glutamic acid-rich protein-like isoform X1

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0090304 nucleic acid metabolic process biological_process

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU9657 False 862 TUCP 0.42 8 23774725 23810964
TU9658 False 650 TUCP 0.49 6 23774725 23780324
XM_039794043.1 True 2754 mRNA 0.47 9 23772856 23811021

Neighbor

gene id symbol gene type direction distance location
rab11fip4b rab11fip4,LOC102782519 coding downstream 87417 23657337 ~ 23685439 (-)
LOC120555782 NA coding downstream 116600 23650623 ~ 23656256 (-)
suz12b suz12 coding downstream 216606 23543467 ~ 23556250 (-)
atad5b NA coding downstream 230895 23535582 ~ 23541961 (-)
LOC120562252 adap2,LOC102784227 coding downstream 240814 23525332 ~ 23532042 (-)
LOC120556266 LOC103353763,LOC100700287 coding upstream 255907 24066928 ~ 24068828 (-)
lyl1 LOC105910150 coding upstream 280646 24091667 ~ 24096223 (-)
LOC120569492 NA coding upstream 322876 24133897 ~ 24135669 (-)
zglp1 zglp1 coding upstream 326367 24137388 ~ 24145207 (-)
fdx2 fdx1l,LOC104950501 coding upstream 334381 24145402 ~ 24149825 (-)
G7069 NA non-coding downstream 188334 23584200 ~ 23584522 (-)
G7067 NA non-coding downstream 195727 23576928 ~ 23577129 (-)
LOC120555765 NA non-coding downstream 201822 23566760 ~ 23571034 (-)
G6995 NA non-coding downstream 264296 23508274 ~ 23508560 (-)
G6993 NA non-coding downstream 343711 23427512 ~ 23429145 (-)
LOC120556236 NA non-coding upstream 126388 23937409 ~ 23943573 (-)
G7141 NA non-coding upstream 204438 24015459 ~ 24055760 (-)
LOC120556287 NA non-coding upstream 245480 24056501 ~ 24059844 (-)
G7179 NA non-coding upstream 271492 24082513 ~ 24084276 (-)
LOC120567450 NA non-coding upstream 285671 24096692 ~ 24099093 (-)
G7071 NA other downstream 4015 23752026 ~ 23768841 (-)
si:ch211-207j7.2 NA other downstream 26825 23734364 ~ 23746031 (-)
LOC120557242 NA other downstream 52106 23711827 ~ 23720750 (-)
G7065 NA other downstream 199807 23572705 ~ 23573049 (-)
G6943 NA other downstream 530566 23213856 ~ 23242290 (-)
LOC120562828 elof1,LOC103353603,LOC103384163,LOC100701647,LOC101173766 other upstream 71724 23882745 ~ 23885762 (-)
G7323 NA other upstream 721215 24532236 ~ 24535316 (-)
si:ch211-243a20.3 si:ch211-243a20.3,LOC107676841,LOC107712233,LOC105901553 other upstream 854364 24665385 ~ 24669297 (-)
LOC120543531 pde6h,LOC101074909,LOC104944980,LOC103354149,LOC107382209,LOC103383788,LOC101158417,LOC106533555 other upstream 944911 24755932 ~ 24759618 (-)
G7589 NA other upstream 1887240 25698261 ~ 25699557 (-)

Expression


Co-expression Network