LOC120562828 (elof1,LOC103353603,LOC103384163,LOC100701647,LOC101173766)


Basic Information

Item Value
gene id LOC120562828
gene name elof1,LOC103353603,LOC103384163,LOC100701647,LOC101173766
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 23882745 ~ 23885762 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU9681
GCCGGGTCTTTTAGGAAGTCTTTTCCTCTCTTTACCGCAACGTGTATCTTCTACAAGCAAAGTTTGTGTGCAGCAATGGGTCGCCGCAAGTCCAAAAGAAAGCCTCCTCCTAAAAAGAAGATGACAGGAGATCTGGACTCTCAGTTCACCTGTCCATTCTGCAACCACGAAAAGTCATGTgatgtcaaaatggagagaagcagaaATACTGGTATAATATCATGCACAGTCTGCTTGGAGGAGTTCCAGACCCCCATTACCTATCTGTCAGAGCCAGTTGACGTGTACAGTGACTGGATAGATGCCTGTGAAGCAGCTAATCAGTAGCCCTCGTGGAGCTGGATGTCTTTCAGGAACGGGATGAGGATGGGGCTGATGGTCCTGGGCCCATTAGGATCAAGCTGGTCAGAGGACATTTATGAAACTTTAATTGTTCACAGGTTTCCATGTGGTCACTTAAGATTTACAGTTGTGTGAACAGCAGTTTCACTTATTTGGTCTTCAGTAGAAAGCGGCCCTGAAGCCTTCCCTTTGTCTTCTGACATCTCCCCCTTCTGTGTAAGATTTCAGcccacaactctagttttgacTCTTGagatgtattaaaaaaaattgagagCTTTCtattttcaacatttgtttttgtatggGTCTCAAAAATCCTTTAGCTTTTACATAGAAGTTGTGAATGGAAAACGCGTCCCtctttttattagattttttaaCCGATAGATATTGTCAGGTGCAGAAATATAATTTTTACAAGAGGCCTGTAGTGTAAGTGAATGGGCTCCCATATTGGCATTTTAATGTGAAATCAATAAAGTAAAATCTTTTTGGTTCGCATTATGAGAAAGCGACATGGGAATATGTGGATCTTGACAGAATCGGTGAGTTGGTGCATTCAAAAGTTGAAAATATTACGTTTTCCACACGTTCATTCTCTATCGTACACTCTGACACACGCAGCAGGGCCTAATTGGAGAGGAAACTTTTCAGGTTTCACTGCCAGGCTTTGCAAAGTGTAGGGTGGAGTGAACTTTTTCTTTGGTTAAATCTTAACACAGTTCAGCATGATGTTACGGGTTGTGTGTCCACAGCTCTCCTCATCCTCATAAAGACGGTTGTGTCACAACATTAGGTCATTCCACTGGAGAGAGGAATGGACGTGTGAGATTTAGGCTGAGCTGCTAAGTTCAAAGGTTTTGAATTCTTAAATCATTTAGTTTTTCACTCGATTGTATGTTTTTAGCTTACATGTTTGAGAAATACAAAAATTCATTAAGTACAAATTGTTATGAAGCGGACTTTTAGAAAATAGTGTTTTCTTAAACTGTAATCAAGTGTTAATATTGAGTGCTTATTTTCCTATGCAACAGCCTTCGGTGTTAAATAGCATAAAAGCacgctgttttaaaaaaaatgttatcaaTTTGATAAGTGTGATCTTGGAAATAAAGCAATAACACTTAAT
>XM_039806733.1
CACACGCTCTCCTCCAATCACTTAACGCGAACAGTTGCCGGTGCCGGGTCTTTTAGGAAGTCTTTTCCTCTCTTTACCGCAACGTGTATCTTCTACAAGCAAAGTTTGTGTGCAGCAATGGGTCGCCGCAAGTCCAAAAGAAAGCCTCCTCCTAAAAAGAAGATGACAGGAGATCTGGACTCTCAGTTCACCTGTCCATTCTGCAACCACGAAAAGTCATGTgatgtcaaaatggagagaagcagaaATACTGGTATAATATCATGCACAGTCTGCTTGGAGGAGTTCCAGACCCCCATTACCTATCTGTCAGAGCCAGTTGACGTGTACAGTGACTGGATAGATGCCTGTGAAGCAGCTAATCAGTAGCCCTCGTGGAGCTGGATGTCTTTCAGGAACGGGATGAGGATGGGGCTGATGGTCCTGGGCCCATTAGGATCAAGCTGGTCAGAGGACATTTATGAAACTTTAATTGTTCACAGGTTTCCATGTGGTCACTTAAGATTTACAGTTGTGTGAACAGCAGTTTCACTTATTTGGTCTTCAGTAGAAAGCGGCCCTGAAGCCTTCCCTTTGTCTTCTGACATCTCCCCCTTCTGTGTAAGATTTCAGcccacaactctagttttgacTCTTGagatgtattaaaaaaaattgagagCTTTCtattttcaacatttgtttttgtatggGTCTCAAAAATCCTTTAGCTTTTACATAGAAGTTGTGAATGGAAAACGCGTCCCtctttttattagattttttaaCCGATAGATATTGTCAGGTGCAGAAATATAATTTTTACAAGAGGCCTGTAGTGTAAGTGAATGGGCTCCCATATTGGCATTTTAATGTGAAATCAATAAAGTAAAATCTTTTTGGTTCGCATTATGAGAAAGCGACATGGGAATATGTGGATCTTGACAGAATCGGTGAGTTGGTGCATTCAAAAGTTGAAAATATTACGTTTTCCACACGTTCATTCTCTATCGTACACTCTGACACACGCAGCAGGGCCTAATTGGAGAGGAAACTTTTCAGGTTTCACTGCCAGGCTTTGCAAAGTGTAGGGTGGAGTGAACTTTTTCTTTGGTTAAATCTTAACACAGTTCAGCATGATGTTACGGGTTGTGTGTCCACAGCTCTCCTCATCCTCATAAAGACGGTTGTGTCACAACATTAGGTCATTCCACTGGAGAGAGGAATGGACGTGTGAGATTTAGGCTGAGCTGCTAAGTTCAAAGGTTTTGAATTCTTAAATCATTTAGTTTTTCACTCGATTGTATGTTTTTAGCTTACATGTTTGAGAAATACAAAAATTCATTAAGTACAAATTGTTATGAAGCGGACTTTTAGAAAATAGTGTTTTCTTAAACTGTAATCAAGTGTTAATATTGAGTGCTTATTTTCCTATGCAACAGCCTTCGGTGTTAAATAGCATAAAAGCacgctgttttaaaaaaaatgttatcaaTTTGATAAGTGTGATCTTGGAAATAAAGCAATAACACTTAATACCA

Function

symbol description
elof1 Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in chromatin-mediated maintenance of transcription. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex. Orthologous to human ELOF1 (elongation factor 1 homolog).

NR:

description
PREDICTED: transcription elongation factor 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU9681 False 1474 lncRNA 0.41 4 23882749 23885720
XM_039806733.1 True 1520 mRNA 0.40 4 23882745 23885762

Neighbor

gene id symbol gene type direction distance location
rab11fip4b rab11fip4,LOC102782519 coding downstream 197306 23657337 ~ 23685439 (-)
LOC120555782 NA coding downstream 226489 23650623 ~ 23656256 (-)
suz12b suz12 coding downstream 326495 23543467 ~ 23556250 (-)
atad5b NA coding downstream 340784 23535582 ~ 23541961 (-)
LOC120562252 adap2,LOC102784227 coding downstream 350703 23525332 ~ 23532042 (-)
LOC120556266 LOC103353763,LOC100700287 coding upstream 181166 24066928 ~ 24068828 (-)
lyl1 LOC105910150 coding upstream 205905 24091667 ~ 24096223 (-)
LOC120569492 NA coding upstream 248135 24133897 ~ 24135669 (-)
zglp1 zglp1 coding upstream 251626 24137388 ~ 24145207 (-)
fdx2 fdx1l,LOC104950501 coding upstream 259640 24145402 ~ 24149825 (-)
G7069 NA non-coding downstream 298223 23584200 ~ 23584522 (-)
G7067 NA non-coding downstream 305616 23576928 ~ 23577129 (-)
LOC120555765 NA non-coding downstream 311711 23566760 ~ 23571034 (-)
G6995 NA non-coding downstream 374185 23508274 ~ 23508560 (-)
G6993 NA non-coding downstream 453600 23427512 ~ 23429145 (-)
LOC120556236 NA non-coding upstream 51647 23937409 ~ 23943573 (-)
G7141 NA non-coding upstream 129697 24015459 ~ 24055760 (-)
LOC120556287 NA non-coding upstream 170739 24056501 ~ 24059844 (-)
G7179 NA non-coding upstream 196751 24082513 ~ 24084276 (-)
LOC120567450 NA non-coding upstream 210930 24096692 ~ 24099093 (-)
palm3 NA other downstream 71724 23772856 ~ 23811021 (-)
G7071 NA other downstream 113904 23752026 ~ 23768841 (-)
si:ch211-207j7.2 NA other downstream 136714 23734364 ~ 23746031 (-)
LOC120557242 NA other downstream 161995 23711827 ~ 23720750 (-)
G7065 NA other downstream 309696 23572705 ~ 23573049 (-)
G7323 NA other upstream 646474 24532236 ~ 24535316 (-)
si:ch211-243a20.3 si:ch211-243a20.3,LOC107676841,LOC107712233,LOC105901553 other upstream 779623 24665385 ~ 24669297 (-)
LOC120543531 pde6h,LOC101074909,LOC104944980,LOC103354149,LOC107382209,LOC103383788,LOC101158417,LOC106533555 other upstream 870170 24755932 ~ 24759618 (-)
G7589 NA other upstream 1812499 25698261 ~ 25699557 (-)
G7603 LOC103353181 other upstream 1898182 25783944 ~ 25788229 (-)

Expression


Co-expression Network