LOC120556236


Basic Information

Item Value
gene id LOC120556236
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 23937409 ~ 23943573 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU9751
ATAGGGTGGGGAGATCTGCCAACCCTCTCAATGCCCCATTTTCCTTTAAAAGTTCAGCTTCCAAAAAagtgagagagggagtgagggcTGAGGGAGGAAGACTTGGTCTCTTCGCTGTTGCCGGAAGCAGAAAAAGGACCTTTAAACAAGTCGGCCTTAGGCCCAGATAGAAAAAAACACGCTCTTTCAAAAGTGGGTCCACTCTGCAGAGATAGGAGGAAAAGAGGACAGCGGCTCCGAGCCCTCCGTCTACCGCAGTTTGGCCTCAGATGCGCCCATGTCCAGCAGCAAGAAGTCAGAGAGACGTCTGCGTCAGAGTCCCGAGATGCTGGTGACTGGGAGGCTCACACATGCCCGACGGCCTGTTTGGAGAATGACcagtttattggaaaaacaCCAAAATGTCCCTCTAAACCCCAAATAATCCCACGACacgatttttttctttcttaactCTTAATTAATTCACAATTAACAGTTTGTACAGTTCGACCGCAC
>XR_005638830.1
GCAGAGATAGGAGGAAAAGAGGACAGCGGCTCCGAGCCCTCCGTCTACCGCAGTTTGGCCTCAGATGCGCCCATGTCCAGCAGCAAGAAGTCAGAGAGACGTCTGCGTCAGAGTCCCGAGATGCTGGTGACTGGGAGGCTCACACATGCCCGACGGCCTGTTTGGAGAATGACcagtttattggaaaaacaCCAAAATGTCCCTCTAAACCCCAAATAATCCCACGACacgatttttttctttcttaactCTTAATTAATTCACAATTAACAGTTTGTACAGTTCGACCGCACTGTGTACTCAGCACGAGCAACTACTGAAGCCCGGAAGTTGCAGAAGGCCAGACAGATTTAGCCTACTGCAagtttgaggtaaaaaaaacgaaaaacgaaaacaatcgAGCAAAATGTGTTTAGAGAACGAGCAAAATGTGTTTAGAGAACGAGCAAAATGTGTAGCATGGTTGTCCAGTGTATAAATCGAAAATAACCTTATTCTCAGCATGACAGTCAGGTGTCTATTTGACATACAGATGACCACTAAATGTGCAGTGCGAGGCTTGCTCAAGTAAAGTAGCCTACGTTTTAAGAAATGGCCCgcaaacatatttttaaatataaaaaaaaatgctgaaaaaaaagacGTTTTTTGACTCTTATGAGTGCATTTACCTGTGAAACAAATCTGAGGGTAGGCTACACTGCACAGCAAActaacacagataaacacattgTGCAGTAATTAACAACATTCACATAATCGCTGTAAATTTAGCTGGCCTATATAAGGTATATTTATCATTTATGAGGAATTTCGAAGAACAGGCCTAAAATTAAAACAGAAGTACACCTGAACTACATGTGGCTGGACATTAAAGTATTAAATATACAAGAAAAACGCGACATCACTAATAATGATTAAAGTATGGATGAAAAACGGTGAAGTTGTTTGTTAAAAGCTATACATTGTTTTATTAGAACAATAGACCAAATACTTTGTCCATCTGAAAATAATTTGAAGAAACCTACTTGCATTTGTCTATGAATGTGgcttaaataataatttatactccTTTGCACTGATGCTGATGCACCATATGCTTATTGACCTCATTTCAATTATggcatatttttttcttaaaataatgTGGATGAAATGTCTTAAAACCTAAAGCCACATCTCAACCACCACGgccattacgtttttttttcttctattttgtgGAAACAGGggacacaataacaaaataacacaaatgGTTGTTGGCATAAACCCTTGATTTAGGCTATAttatcaaaacaaaataaaaaaaggagccACCCAAGGAAAAGTTAACAAGTTGGGTTCCTTTTAAAAGTTCTTTGGAAGAAATGtaaatctaaaaaataaattctttaTGTTACAAAAGTTACAAAAACCAACTGGAGGAAATGTACTGGCGTGCGTCAGCCCTGATCATGTAAAGCAACCTAGAAGTGTCAATTAGGCTGAGCTTTGGGTTAATAGAAGCCCTGAATGGTGGATCTCACCACAGCCCTCTAAACCAGCCATTACTGCAGACCACAACGACTCTGATACCACACTGTTTTAAGACCCAACATTATGTGGGCAATATGTTCCCTAAAGCTCACTGTAAGAGGAGAAGGGCACATTGTGGGATCAGGCAGGCAGAGTTCAGACAACATGGAGGGACTGTTTTTTCTAAAGTCTGTAAACCTTCAAATGATTCTTTCCTAAAAATTACAAGTTTAAGATCCTGGAATAGAACTGCAAACCATGACTGACATGTTAAAAACTAATTATCAGAGAAGAGACCAGCCGATTCATTGCTGGTGATAAATTGCAGCAGACAAATATTCACTTATCAAAGATGGATTTGGCACCAAGTGTTTACGAGTTTAGAGAAACGTAAACAGACGTCTTTAATCATCAGGCACACATTTTATCAAAGTAATTACTAGATATTGAAGTGCACAATAAGGATAACAATATAAGGAACCATCTCAGATTATGTTTAAGTAGTTACAGAGTAAATGTGGTGTCTGAGCAATATGGAAATCGAACAGATGTTTGACGCACCTGTCTATGTAGCACAACATGACTGAGTTAAATGGTCCCTCCTCTGTCCGCAAATCAAAATCTCAAAACACTCTGATTTGTAAAGCGAAATAATGTTGTTACAAATGGTGATTGTTACAATAAACTGAAGCAATATAACTCAGGGTGGACCAAGGTGAAAATAACAAATGTCCTCAGAAGTAAAGGTGAAACAGAAAGACATTCACggacctttaagaaaaaaaaaggagaaaacaaTGCAAAGGGAAATGGCAGCTCATCCAGACAACTTTATTGTGCtatttacaaaatgtacaaattTGCAAAGCTACTGTGCACAATTAAACTACCAAGGCCTAACAAGATCACAAAAAGAACTACGGACGGTCAATCAAATAGatggaagaaataaagaaaagcaaATATAGCTGAGCTGGAGAATTGAGTGACTATTATACCTAAATGATAAGCCAAATTTTAGACTCAAAGCACTGCCAGCAGTGCACAAAAAACACTGCACAGCTAAAAAAGcacaacacaataaaaaacaaaggcCTCAGTCCTGCTGCCACTCTTCCCTCTGACTCCTGCAGCATATCTCCTGCTCTCACCGCCCTCTGCTGCAGTGAAAATTAAATACTCATTTGGCCTTACACAAAATATACTCTGCACCAAGACCATATGTCAAACTCGGTGGAActatttttttccctctcaaTCATCATTCCTCTTCCCGCTAAAAGAAATGGCCCAGACAATTCTGCGCCTCCATGCGAGTAGTGCAATAAGCGGTGGAAAG

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04512 ECM-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU9751 False 498 lncRNA 0.49 2 23939973 23943573
XR_005638830.1 True 2857 lncRNA 0.38 2 23937409 23943368

Neighbor

gene id symbol gene type direction distance location
rab11fip4b rab11fip4,LOC102782519 coding downstream 251970 23657337 ~ 23685439 (-)
LOC120555782 NA coding downstream 281153 23650623 ~ 23656256 (-)
suz12b suz12 coding downstream 381159 23543467 ~ 23556250 (-)
atad5b NA coding downstream 395448 23535582 ~ 23541961 (-)
LOC120562252 adap2,LOC102784227 coding downstream 405367 23525332 ~ 23532042 (-)
LOC120556266 LOC103353763,LOC100700287 coding upstream 123355 24066928 ~ 24068828 (-)
lyl1 LOC105910150 coding upstream 148094 24091667 ~ 24096223 (-)
LOC120569492 NA coding upstream 190324 24133897 ~ 24135669 (-)
zglp1 zglp1 coding upstream 193815 24137388 ~ 24145207 (-)
fdx2 fdx1l,LOC104950501 coding upstream 201829 24145402 ~ 24149825 (-)
G7069 NA non-coding downstream 352887 23584200 ~ 23584522 (-)
G7067 NA non-coding downstream 360280 23576928 ~ 23577129 (-)
LOC120555765 NA non-coding downstream 366375 23566760 ~ 23571034 (-)
G6995 NA non-coding downstream 428849 23508274 ~ 23508560 (-)
G6993 NA non-coding downstream 508264 23427512 ~ 23429145 (-)
G7141 NA non-coding upstream 71886 24015459 ~ 24055760 (-)
LOC120556287 NA non-coding upstream 112928 24056501 ~ 24059844 (-)
G7179 NA non-coding upstream 138940 24082513 ~ 24084276 (-)
LOC120567450 NA non-coding upstream 153119 24096692 ~ 24099093 (-)
G7292 NA non-coding upstream 501607 24445180 ~ 24449314 (-)
LOC120562828 elof1,LOC103353603,LOC103384163,LOC100701647,LOC101173766 other downstream 51647 23882745 ~ 23885762 (-)
palm3 NA other downstream 126388 23772856 ~ 23811021 (-)
G7071 NA other downstream 168568 23752026 ~ 23768841 (-)
si:ch211-207j7.2 NA other downstream 191378 23734364 ~ 23746031 (-)
LOC120557242 NA other downstream 216659 23711827 ~ 23720750 (-)
G7323 NA other upstream 588663 24532236 ~ 24535316 (-)
si:ch211-243a20.3 si:ch211-243a20.3,LOC107676841,LOC107712233,LOC105901553 other upstream 721812 24665385 ~ 24669297 (-)
LOC120543531 pde6h,LOC101074909,LOC104944980,LOC103354149,LOC107382209,LOC103383788,LOC101158417,LOC106533555 other upstream 812359 24755932 ~ 24759618 (-)
G7589 NA other upstream 1754688 25698261 ~ 25699557 (-)
G7603 LOC103353181 other upstream 1840371 25783944 ~ 25788229 (-)

Expression


Co-expression Network