sart1 (sart1)


Basic Information

Item Value
gene id sart1
gene name sart1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 33548703 ~ 33551557 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787194.1
GGGTGTTCGACGACGACGTAACGTTGTGAAGTTGTGTGCCTGAGCGTGAAGCTAGGTGGTTAAACTGCTGTGAAAGAAACATATAgctaagtattttttttccacatcctCACTTTTCGTCGATCACTACTGGATTTTGAATTTGCAACTGTTGTACTCTGCAAAGGAAATAATGGGATCCTCCAAGAAACGCAAGGAAAAAAGCCGCGACAAAGACGCAGAAGAGCGGAAGGACCGACATAAGAAACATCGCCACAAGGACCGAGAAAGAGATGCTTCAGACCGGGATGGGACTCGGGATAAAGAGAAACGTAAACGCTCCAGGTCTCGGGAGAGAAGCGGACGGGAGAGCCGCAGCAAAGGTGAAAGGAGTACCGGGGAGCCACGAGTGAAGAAGGAGAAAGTTGATCTTGGATATGAAGAAAGCAATACAGAGTTGCAGCCTCAGTCTGCAAGCGGAGACGCATCTCTCAGCATTGAGGAGACAAACAAACTCAGAGCCAAGCTGGGTCTGAAGCCTCTGGAATTAAATGAGAACAAGAAGGAGCTCGGCACTAAAGAAGAACCCATGGTGGCTGAGACCATTAACCCTGTTCTCATCAAGAAGCAGAAAGATATGAGAGAAAAGCTTGCAGCCATGAAAGAAAAGCGCATCCAGAACAAGAAACTGGGAAAGGTCAAGACCCTAGCAGAGGAGGACTGGCTGGATGATGCAGCTGCTTGGGTTGAGAAAAGCAGACTGAtggcaaaagaaaaagaaatggcagagaAAAGAGCCAAACTTCTGGAAGAGATGGATGAGGAGTTTGGTGTGAGCAGTCTGATAGAGGAGGAGTTTGCACAAAGCAAGAAGGATGCCTACACATCTCAAGATCTAAAAGGACTCAAAGTGCAGCACAAGGTGGACTCATTCAACGAGGGCCAGACTGTCATCCTGACCCTACAAGACAAAGGTGTACttgaagaggaggaagatgtGCTTGTAAACGTGGGACTGGTGGACAaggaaaaagcagaaaagaatgtggaattaaaaaagaaaaagccagaTTACAAGCCCTATGAAGAAGAGGAGAGTGTGGATGACATGGTGACGTTTAAAACCCACTCTGTACTGTCAAAGTATGATGAGGAAATCGAgggtgaaaagaaaaagagtttCCGTTTGAAGACGGGGGGCTTTGCTGATGGGGAGCGAGAGCGGGAGGTTCAGGCCATGAGAGAGGCTCTGCGAAAACAGGCCCAGTCGTTGGACATGCCTGCTCTCACCATCGCCTCAGAGTATTACACACTCAAGGAAATGGTGGgctttaaaaagacaaaacggCGTGTGAGGAAGATCAGGAAGAAGGAGAAGCAGCCAGCTGTAGATGAGCTGCTCATTGATGACACTCGCAGCACTGATTTTGGCTCCAGAACACGCGGTCGAGGCCGCAAACAGGTTGAGGAAGAGGGTGAGGAAGcaaaggaggaggagcaggagagcaAATTGCCACACGCTATCCCCCAAATGTCCGATGACGTTAGGATGGCAGAAATGGACATAAGTGACGACGAAGACTTTACACCTCCTGAGCCAGCTGCAATTGAGGAGGATGAGGCAGAGCAGGAGCTACAGAAACAACTGGAGAAGCAGAGGAAGCTGAAGCAAAAGCAGCTTCTCAAAGACTCTGGAGAGAAGGTGGCAGAGCAGATTAAAGAGCTTATCGAAGGCAACAATGACAATGATCCTGAGAGGAAGAACAACATTGTTTTCAACGCCACCTCAGAGTTTTGCAGAACTCTGGGTGATATTCCAACGTATGGGCTGTCAGGCAACAGAGAGGACCAAGAAGACATTATGGACtttgaagaggaagaagagaaagatgATGCTGGAGGTTCAGACTCAGAAATGGATGAGAATGTTGGATGGAGCACAGTCAACTTGGATGAAGAGCAGAAACAGCCAGATTTCTCCACAGCCTCTGCCACCATTTTGGACGAGGAGCCCATTGTGAAATCCGGTCTTGCCGCTGCCTTGCTGTTGTGCAAAAACAAAGGTCTACTGGACACTGAAATGCAGAAGGTAGCCCGTGTCAGGGCAACAAAAGGTGCCTTGCCCAATGACAACTACTGCATCGAGGACAAGATGGGCTTTGATGACAAGTACAGTCGCAGAGAAGAATACAGAGGCTTCACTCAAGATTTCAAGGATAAGGATGGCTATAAGCCTGATGTCAAGATTGAGTATGTGGATGAATCTGGGCGGAGACTCACTCCAAAAGAGGCTTTCAGGCAGCTTTCACATCGATTCCATGGTAAAGGGTCTGGAAAGATGAAGACCGAGAGGAGGATGAAAAAGCTGGAGGAAGAGGCACTGCTGAAGAAGATGAGCAGCAGTGATACTCCTCTTGGGACCGTGGCTTTGCTTCAAGAGAAGCAGAAAtctcagaaaacaccatatattgtGCTTAGTGGTAGTGGGAAAAGTATGAATGCAAACAACATCACTAAATAAGGCAGGGGAGGGGAAGAGTTAATTATCTTGAACACATACACTGACACATGCAtagacatacatatacacacaggaTGTTTTAAGTAAAGTAAATGCTCCAATTTCATGCCTACTTCATAGAAGCTTTGTTGTAGTAAATAATTGTCCAATAAAGTTAATACAAAtgacaaa
>XM_039787275.1
GTTGTGTGCCTGAGCGTGAAGCTAGGTGGTTAAACTGCTGTGAAAGAAACATATAgctaagtattttttttccacatcctCACTTTTCGTCGATCACTACTGGATTTTGAATGTAAGGTTTCATTTTTGCTTACGCACTAATTGCAACTGTTGTACTCTGCAAAGGAAATAATGGGATCCTCCAAGAAACGCAAGGAAAAAAGCCGCGACAAAGACGCAGAAGAGCGGAAGGACCGACATAAGAAACATCGCCACAAGGACCGAGAAAGAGATGCTTCAGACCGGGATGGGACTCGGGATAAAGAGAAACGTAAACGCTCCAGGTCTCGGGAGAGAAGCGGACGGGAGAGCCGCAGCAAAGGTGAAAGGAGTACCGGGGAGCCACGAGTGAAGAAGGAGAAAGTTGATCTTGGATATGAAGAAAGCAATACAGAGTTGCAGCCTCAGTCTGCAAGCGGAGACGCATCTCTCAGCATTGAGGAGACAAACAAACTCAGAGCCAAGCTGGGTCTGAAGCCTCTGGAATTAAATGAGAACAAGAAGGAGCTCGGCACTAAAGAAGAACCCATGGTGGCTGAGACCATTAACCCTGTTCTCATCAAGAAGCAGAAAGATATGAGAGAAAAGCTTGCAGCCATGAAAGAAAAGCGCATCCAGAACAAGAAACTGGGAAAGGTCAAGACCCTAGCAGAGGAGGACTGGCTGGATGATGCAGCTGCTTGGGTTGAGAAAAGCAGACTGAtggcaaaagaaaaagaaatggcagagaAAAGAGCCAAACTTCTGGAAGAGATGGATGAGGAGTTTGGTGTGAGCAGTCTGATAGAGGAGGAGTTTGCACAAAGCAAGAAGGATGCCTACACATCTCAAGATCTAAAAGGACTCAAAGTGCAGCACAAGGTGGACTCATTCAACGAGGGCCAGACTGTCATCCTGACCCTACAAGACAAAGGTGTACttgaagaggaggaagatgtGCTTGTAAACGTGGGACTGGTGGACAaggaaaaagcagaaaagaatgtggaattaaaaaagaaaaagccagaTTACAAGCCCTATGAAGAAGAGGAGAGTGTGGATGACATGGTGACGTTTAAAACCCACTCTGTACTGTCAAAGTATGATGAGGAAATCGAgggtgaaaagaaaaagagtttCCGTTTGAAGACGGGGGGCTTTGCTGATGGGGAGCGAGAGCGGGAGGTTCAGGCCATGAGAGAGGCTCTGCGAAAACAGGCCCAGTCGTTGGACATGCCTGCTCTCACCATCGCCTCAGAGTATTACACACTCAAGGAAATGGTGGgctttaaaaagacaaaacggCGTGTGAGGAAGATCAGGAAGAAGGAGAAGCAGCCAGCTGTAGATGAGCTGCTCATTGATGACACTCGCAGCACTGATTTTGGCTCCAGAACACGCGGTCGAGGCCGCAAACAGGTTGAGGAAGAGGGTGAGGAAGcaaaggaggaggagcaggagagcaAATTGCCACACGCTATCCCCCAAATGTCCGATGACGTTAGGATGGCAGAAATGGACATAAGTGACGACGAAGACTTTACACCTCCTGAGCCAGCTGCAATTGAGGAGGATGAGGCAGAGCAGGAGCTACAGAAACAACTGGAGAAGCAGAGGAAGCTGAAGCAAAAGCAGCTTCTCAAAGACTCTGGAGAGAAGGTGGCAGAGCAGATTAAAGAGCTTATCGAAGGCAACAATGACAATGATCCTGAGAGGAAGAACAACATTGTTTTCAACGCCACCTCAGAGTTTTGCAGAACTCTGGGTGATATTCCAACGTATGGGCTGTCAGGCAACAGAGAGGACCAAGAAGACATTATGGACtttgaagaggaagaagagaaagatgATGCTGGAGGTTCAGACTCAGAAATGGATGAGAATGTTGGATGGAGCACAGTCAACTTGGATGAAGAGCAGAAACAGCCAGATTTCTCCACAGCCTCTGCCACCATTTTGGACGAGGAGCCCATTGTGAAATCCGGTCTTGCCGCTGCCTTGCTGTTGTGCAAAAACAAAGGTCTACTGGACACTGAAATGCAGAAGGTAGCCCGTGTCAGGGCAACAAAAGGTGCCTTGCCCAATGACAACTACTGCATCGAGGACAAGATGGGCTTTGATGACAAGTACAGTCGCAGAGAAGAATACAGAGGCTTCACTCAAGATTTCAAGGATAAGGATGGCTATAAGCCTGATGTCAAGATTGAGTATGTGGATGAATCTGGGCGGAGACTCACTCCAAAAGAGGCTTTCAGGCAGCTTTCACATCGATTCCATGGTAAAGGGTCTGGAAAGATGAAGACCGAGAGGAGGATGAAAAAGCTGGAGGAAGAGGCACTGCTGAAGAAGATGAGCAGCAGTGATACTCCTCTTGGGACCGTGGCTTTGCTTCAAGAGAAGCAGAAAtctcagaaaacaccatatattgtGCTTAGTGGTAGTGGGAAAAGTATGAATGCAAACAACATCACTAAATAAGGCAGGGGAGGGGAAGAGTTAATTATCTTGAACACATACACTGACACATGCAtagacatacatatacacacaggaTGTTTTAAGTAAAGTAAATGCTCCAATTTCATGCCTACTTCATAGAAGCTTTGTTGTAGTAAATAATTGTCCAATAAAGTTAATACAAAtgacaaa

Function

symbol description
sart1 Predicted to be involved in mRNA cis splicing, via spliceosome and maturation of 5S rRNA. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex. Orthologous to human SART1 (spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP).

NR:

description
PREDICTED: U4/U6.U5 tri-snRNP-associated protein 1

GO: NA

KEGG:

id description
K11984 SART1, HAF, SNU66; U4/U6.U5 tri-snRNP-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787194.1 True 2671 mRNA 0.47 2 33548703 33551557
XM_039787275.1 False 2670 mRNA 0.46 2 33548703 33551527

Neighbor

gene id symbol gene type direction distance location
LOC120564990 LOC104967107,LOC102294790,LOC103370278 coding downstream 1320 33539583 ~ 33547383 (-)
casp3a LOC103370277 coding downstream 13647 33528419 ~ 33535056 (-)
prom1b NA coding downstream 198951 33319370 ~ 33349752 (-)
fgfbp2b fgfbp2 coding downstream 233402 33313734 ~ 33315301 (-)
LOC120562840 NA coding downstream 238670 33307762 ~ 33310033 (-)
asah1b asah1,LOC102779657 coding upstream 29296 33580853 ~ 33589041 (-)
frg1 NA coding upstream 41085 33592642 ~ 33605132 (-)
LOC120564947 LOC101485601,LOC102207182,LOC103357494,LOC100703355,LOC102781869,LOC102299071 coding upstream 838591 34390148 ~ 34400994 (-)
tlr3 NA coding upstream 853495 34405052 ~ 34411361 (-)
npy2r NA coding upstream 965230 34516787 ~ 34521757 (-)
G9565 NA non-coding downstream 21916 33526548 ~ 33526787 (-)
G9537 NA non-coding downstream 122703 33409522 ~ 33426000 (-)
G9540 cpe non-coding downstream 124981 33422805 ~ 33423722 (-)
G9538 cpe non-coding downstream 126466 33406650 ~ 33422237 (-)
G9504 NA non-coding downstream 171465 33375867 ~ 33377238 (-)
G9584 NA non-coding upstream 21616 33573173 ~ 33573787 (-)
G9608 NA non-coding upstream 64066 33615623 ~ 33615920 (-)
G9612 NA non-coding upstream 91523 33643080 ~ 33643396 (-)
G9615 NA non-coding upstream 113711 33665268 ~ 33665794 (-)
G9618 NA non-coding upstream 170286 33721843 ~ 33722073 (-)
stox2a stox2,LOC100702551,LOC102293991,LOC101478850,LOC102775740 other downstream 23188 33497102 ~ 33525515 (-)
tapt1b tapt1,LOC104934196,LOC102290950 other downstream 184478 33306785 ~ 33364225 (-)
G9488 NA other downstream 264623 33283078 ~ 33284080 (-)
G9418 fbxw7,LOC104948758 other downstream 413783 33092460 ~ 33134920 (-)
lrba NA other downstream 767549 32584724 ~ 32781154 (-)
G9740 NA other upstream 901293 34452850 ~ 34457635 (-)
G9997 NA other upstream 1847083 35398640 ~ 35400474 (-)
rgs12b rgs12,LOC104946104 other upstream 1853258 35404815 ~ 35451211 (-)
LOC120572869 NA other upstream 2032913 35584470 ~ 35586613 (-)
micall1a LOC100693188 other upstream 2392491 35944048 ~ 35969266 (-)

Expression


Co-expression Network