gde1 (gde1,LOC100700294,LOC102797450)


Basic Information

Item Value
gene id gde1
gene name gde1,LOC100700294,LOC102797450
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 18985103 ~ 18990486 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039791131.1
ATGCTGCAGATGGGAGATGAAGTCACCCTGTACTCGGTCGTCTTCGTGGTCGTCCTGCTGGGGACCCGGAGCCCGGTTTGGACCACCGTCCTCACCGCCTCTCTCTACCTCTTTCTGGCCATGTTCTGTTTCCCCCAGGTACCGACCAGCCGAGCCCGGCAGGTGCTGCACCCAGCCAAGGGCTTGTCGGTGGTCGCTCACCGGGGCGGTGGGCACGACGCACCGGAGAACACGATAGTCGCCATTCGGGAGGCCAGTAAGAATGGGGCGACAGGTGTGGAGTTGGACCTGGAGTTCTCAGCAGACGGCGTTCCAATACTGATGCACGATGAGACTGTGGACCGGACCACTAACGGTTCGGGACCACTCAGTCAGATGACCCTGTCCGATTTGGGGAGACTGGATGCAGCTGCTAAACATCGACTTAAGGACAGGTTTGCTGGAGAGAAGATCCCAACTCTTGACGAGGCGGTGGAGGAATGTATCAAGCTGCAGCTCACCATCTATTTTGATGTCAAAGGTCATCCAGATGAGgCAGCTGCAGCCCTCAAAGAATTGTATAAAAAACACCCAGTCCTCTACAACAGCAGCATTGTCTGCTCTTTCGAGCCCAGAGTTATCTACAAGATGAGACAGAGCGACCCAGAAGTGGTCACAGCATTGACCCACCGGCCATGGAGCCTGAGTCGGTTAGGAGATGGCGTCCCGCGTTTCTCATCGCTATGGAAACACAATTGGATGACACTAATGGACATGGTGTTTGACTGGGCACACCATCACGTGCTGTGGAAGCTGTGTGGCATCTCAGCCTTCCTCATCCAGAAGAACTTTGTCTCAGTGGACTATGTGCAGTACTGGGCCCAGAGGGGGGTGGAAGTGGTAGCCTGGACAGTCAACACAAAAGTGGAGAAAGAGTACTACCAGGAGCTGCTGCAAGTCAACTACATCACAGACAGCCTTGTGGAAGACTGTGAACCCCATTACTGAGACACACATGAACCCAGCACAGGATGTGTTCCCACATATAGTCATTAAAAAGATCAAATCCATATGAAAGGCCTTTTCACTGTCTACTTGTCACCCATAATTTGGCCTCAGGTAAGAGAACACATGCCACTCCTATTCCTATGCACTATGCATTATTGCGAATGTGTGTAGGATTATTTGAGGCAATCAAACTGACCAGACTGGTTGCTATACTTAATAACAAGAGGCATGACACGCCATTTATAGACATTTTGGCAATAAGTGTCTATAATAGACCTTAATCAAATGTACTGTATTCACCAACTCAGGACTGCaattatgtttgttttctttttaattctgtCTGTCTTACTGTCTTACAAGACCtacaatatatgtatattgtatcaTACGGTCTGCTTTTTACTCAGTAAAGGTGATTAGGTCTGGCATAAACCACCTAGAAATTATTTTGGTCACTCGTAAAAAAAAACGAATACATATTTAGAACTAATATGaataaacattttatatatttgacATAGGTGCATATGGAACTGAAATGTAGAATAGATGGATACAGATAGTGCATCAGGTGCTAATTTATTGTTCTTTGGGTTCTGAAAAGGAGCTATGGCTGCTCGAAGTACAGTCCACCAAAGGATCTAATAACATGAAATAAACTAATAACACTAACAATGTCTCTGTTGCATTTAGGTGTGGAAGCCAGTGAGCCAGCATCTGAAATATCAGATGAACTGGACTGGAAAACCTAAATGAAATGCAGCCATTGTTGTTAATTACTGGTATCTGTGTTTGACCAAAGGTAAATTCACCTTCAGAAAGGTTTTCAGACTCAACAGTGCTCTGAAATATATAGATAAGACTGCTAGATTAATTCAATTTATAAACTCTTTGACTCGAATATTAACCTCATCTGCATTTTGTTTGATTTAATCTAAGCATACTTAACAATTTAAGAAACAAAGGAAAAAAGTAAAAGGCTTATTTCAGTTAGTCTTAAAAGCGGAAAGAATCAAATcatgaatattttattttaaataattgaatGCTTTGTGGTGATGCAGAGTAGGCGGTAGAGCGgacatactgtgtgtataaAATGCTGTGGGTTGGGTGCCCGGGTCGCTCAGTTGGTAGTACTTAGCGCCTATAactagaggtttactcctcaacacagcgaccgcgggttcgactctgacctaaCATAACCCAGAAGAgtgtaagaaaaacaaaacatgtaacatacagtatacaaagACTATTTGACATACATAAACAGAGATTGTGAACACAAagaatataaaacatataaagacAGTATTTGACTAAACCAGGGTTTCCGCGGGTCATTAAAAAGCatgaaaagtaattaaatagattttGTGAAAATTCAGGCATGAACtggcatgaaaaagcatgaactTTGATGTTCAAAGGCATTAAAAATTATGTAAACTTgatggaataaaaacattgtttttcacga

Function

symbol description
gde1 Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within lipid metabolic process. Orthologous to human GDE1 (glycerophosphodiester phosphodiesterase 1).

NR:

description
PREDICTED: glycerophosphodiester phosphodiesterase 1

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006071 glycerol metabolic process biological_process
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function

KEGG:

id description
K19179 GDE1; glycerophosphoinositol glycerophosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039791131.1 True 2476 mRNA 0.43 6 18985103 18990486

Neighbor

gene id symbol gene type direction distance location
LOC120560204 pbx4,LOC104952752,LOC103392870,LOC102788435 coding downstream 180469 18790616 ~ 18804634 (-)
LOC120562921 LOC104952754,LOC103372004 coding downstream 197245 18783925 ~ 18787858 (-)
LOC120559658 LOC104952753 coding downstream 218219 18752659 ~ 18766884 (-)
LOC120559642 slc27a1,LOC103362239 coding downstream 233112 18743569 ~ 18751991 (-)
LOC120563090 NA coding downstream 248582 18727400 ~ 18736521 (-)
xpnpep1 xpnpep1 coding upstream 114761 19105247 ~ 19120656 (-)
cusr NA coding upstream 130547 19121033 ~ 19142663 (-)
pnpla6 pnpla6,LOC107083430 coding upstream 613943 19604429 ~ 19639873 (-)
LOC120568545 atp5h,LOC101475776,LOC102207628,LOC102296504,LOC100697434 coding upstream 650045 19640531 ~ 19644093 (-)
LOC120574931 LOC103369153,LOC102777830,LOC104922226,LOC101476272 coding upstream 655015 19645501 ~ 19647903 (-)
G5970 NA non-coding downstream 23106 18961212 ~ 18961997 (-)
G5954 NA non-coding downstream 28472 18956407 ~ 18956631 (-)
G5935 NA non-coding downstream 54603 18930256 ~ 18930500 (-)
G5926 LOC103372008 non-coding downstream 109365 18874875 ~ 18875738 (-)
G5921 LOC103372008 non-coding downstream 127564 18836277 ~ 18857539 (-)
G5980 NA non-coding upstream 20708 19011194 ~ 19011517 (-)
G5984 NA non-coding upstream 60076 19050562 ~ 19050835 (-)
G6020 NA non-coding upstream 245707 19236193 ~ 19242318 (-)
G6025 NA non-coding upstream 270749 19261235 ~ 19263727 (-)
G6052 smc3 non-coding upstream 396841 19387327 ~ 19394267 (-)
mcrip2 mcrip2,LOC104963804 other downstream 2785 18971970 ~ 18982318 (-)
G5930 LOC102307335,LOC101466373 other downstream 94883 18884968 ~ 18890220 (-)
LOC120556582 NA other downstream 1103344 17879868 ~ 17881759 (-)
LOC120556682 NA other downstream 1137066 17835904 ~ 17848037 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other downstream 1149342 17817507 ~ 17835761 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other upstream 32730 19023216 ~ 19037081 (-)
G6084 NA other upstream 499102 19489588 ~ 19545927 (-)
LOC120569510 NA other upstream 774407 19764893 ~ 19765387 (-)
micu3a micu3,LOC100706756,LOC102779354,LOC101479276 other upstream 776011 19766497 ~ 19796522 (-)
spink4 NA other upstream 1052277 20042763 ~ 20044726 (-)

Expression


Co-expression Network