exosc1 (exosc1,LOC107700859)


Basic Information

Item Value
gene id exosc1
gene name exosc1,LOC107700859
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17594016 ~ 17598848 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793375.1
CTTTCCTTCCGCTCAGCGTGCGACCGGCCAATCAGATTCGACTCGAGCCCTTCGTCACAGCCAATCGGCTGAGAATCTGCTCTTCTCGAAAACATGTCGCCCATGAAGCTGTGTGTTCCAGGTGACAAGCTATGCAGCGTAGAAGACTGTATTCCCGGCACAGGAGTATATCTTCGGCACGGCTACATTTACTCTTCCCTAGCAGGCTACGTGCTCAAGAAGAACGAGGGAGAGGAGTTACCAGTGATCTCAGTGGTGAGAGAAACAGAAACGCAACTACTACCCGATGTAGGAGCAATCGTCACCTGTAAGGTGACCAGTATCAACCCCAGGTTCGCAAAGGTCCACATCCTTTATGTAGGCTCAACACCGCTGAAGGACCGCTTCAGAGGAACAATCAGAAAAGAAGATGTGCGTGCAACAGAGAAAGACAAGGTGGAAATATACAAAAGCTTCAGACCTGGCGACATCGTCTTGGCGAAAGTGATTTCCCTCGGTGACGTGCAGTCTAACTACCTGTTGACAACAGCAGAGAATGAACTAGGGGTGGTGGTGGCGCACAGTGAAGCAGGTGTCCAGATGGTTCCCATCAGCTGGTGTGAGATGCAGTGCCCACGGACGCACAGCAAAGAGTTTCGCAAAGTGGCCCGCGTGCAGCCGGAGTACCTGCAGGCATGAGACAACTTCTATCTTTCACAAGGAACACACAGCTTCCCCTCCCTCTTTCACTCACTGTCATCAAGTAGCCTCCCAACTCTTGTTTTCAGATGTGTTCTGAGAGACTAGACAACGTGCATATTGTTGGCTACCTCTGCTTTCATGTCTTTTTAAATAGCTCTCCCTCTGCACATTGTGTCATCATCTGATTGTGCCAGCTTGAAAATACTGAAACAGGGTCAGACCAAACTGTCAGCACATATTCTAAACAATTTCGTGACTGTTGTAAAGACAATGTTTAACCAAAGTGAGTCCATGTGCCAGCAACTTGGCTTTTTGAAGTTGCCTTTCAATTGCCCTACGGCAACCTGATTAGAACTGTCTGACTCCGTTCACTCAGGATGTTACATGGCAGCTACTGAGCTTTCTAAGATGAAAGCATAGAAGAATTTTGCACCTAGtcaaaaaaggcctttttcacagatgCAGGATACACTCAAGTTTTGCTATTGAGTATAATGGCCTTATCATTAGGACACCTGAAGGATGAAGCAGTTGGTGCATGTTGCTGGATCCATAAACGCCCAGACTGCATTTTGTAACCAGAGAGATTTAAAGGGCAGTGGCTGTAGTATTGGTTTGAGATAATGAGGACTCAACCAGAAATGCTGCACTTGAAACTTCTTATGCATGTCATGTATgcaactgactttttttttttttgtccataaaagtgataaaacaatcTCCTCAGGCTCTTTTGTCCTTACTCCTTTCCGATCCTTCCAGTTTCAAGTAAACTGATGGACAAATGTCCACGCAGCAGTTTAACGTTAAATGATTACAACTGGCAGaaatgaaaaaagcagaaatgtttccATTTTATCTTTGAAGTAAAGTGTACTTTGATTCCTCCTTCACTTTACAACAGTCATTTATGTGCAAGATCGAAATAAAATGACTATTAAAGCCA
>XM_039793435.1
TTGGTTTTTGTGGATGTCGCCGTGTTTATATAAATTATAGTTACTCTGCAGTCCGACGGTGTAAAACACTTAACTATTTCCAGCTGCCATGCGTAGGGTGGGCTTGGGCTTCTAGCACAGTTAACGTTACATTCCCCTTCTTCTAGATGATGGCTATCTGTAATATGTGAGTGTAATAGGCCTTTCAGAACAAACAGCCAGCCTGCCGCTGGGTTCAGCGCACATTGGTTACAGCGCGCTGTGCTCAAAGTTCAGCGCTTTGCTCGACGCAGTGAAATGCCGTCGTGGCGCGGCGCAAGCCATTGGAAATAATGGGTTTCAGAGCTCAGCGGTTCCGTTGAGTTGAGCGCTTCTATatcaaaatgttttatgGTGACAAGCTATGCAGCGTAGAAGACTGTATTCCCGGCACAGGAGTATATCTTCGGCACGGCTACATTTACTCTTCCCTAGCAGGCTACGTGCTCAAGAAGAACGAGGGAGAGGAGTTACCAGTGATCTCAGTGGTGAGAGAAACAGAAACGCAACTACTACCCGATGTAGGAGCAATCGTCACCTGTAAGGTGACCAGTATCAACCCCAGGTTCGCAAAGGTCCACATCCTTTATGTAGGCTCAACACCGCTGAAGGACCGCTTCAGAGGAACAATCAGAAAAGAAGATGTGCGTGCAACAGAGAAAGACAAGGTGGAAATATACAAAAGCTTCAGACCTGGCGACATCGTCTTGGCGAAAGTGATTTCCCTCGGTGACGTGCAGTCTAACTACCTGTTGACAACAGCAGAGAATGAACTAGGGGTGGTGGTGGCGCACAGTGAAGCAGGTGTCCAGATGGTTCCCATCAGCTGGTGTGAGATGCAGTGCCCACGGACGCACAGCAAAGAGTTTCGCAAAGTGGCCCGCGTGCAGCCGGAGTACCTGCAGGCATGAGACAACTTCTATCTTTCACAAGGAACACACAGCTTCCCCTCCCTCTTTCACTCACTGTCATCAAGTAGCCTCCCAACTCTTGTTTTCAGATGTGTTCTGAGAGACTAGACAACGTGCATATTGTTGGCTACCTCTGCTTTCATGTCTTTTTAAATAGCTCTCCCTCTGCACATTGTGTCATCATCTGATTGTGCCAGCTTGAAAATACTGAAACAGGGTCAGACCAAACTGTCAGCACATATTCTAAACAATTTCGTGACTGTTGTAAAGACAATGTTTAACCAAAGTGAGTCCATGTGCCAGCAACTTGGCTTTTTGAAGTTGCCTTTCAATTGCCCTACGGCAACCTGATTAGAACTGTCTGACTCCGTTCACTCAGGATGTTACATGGCAGCTACTGAGCTTTCTAAGATGAAAGCATAGAAGAATTTTGCACCTAGtcaaaaaaggcctttttcacagatgCAGGATACACTCAAGTTTTGCTATTGAGTATAATGGCCTTATCATTAGGACACCTGAAGGATGAAGCAGTTGGTGCATGTTGCTGGATCCATAAACGCCCAGACTGCATTTTGTAACCAGAGAGATTTAAAGGGCAGTGGCTGTAGTATTGGTTTGAGATAATGAGGACTCAACCAGAAATGCTGCACTTGAAACTTCTTATGCATGTCATGTATgcaactgactttttttttttttgtccataaaagtgataaaacaatcTCCTCAGGCTCTTTTGTCCTTACTCCTTTCCGATCCTTCCAGTTTCAAGTAAACTGATGGACAAATGTCCACGCAGCAGTTTAACGTTAAATGATTACAACTGGCAGaaatgaaaaaagcagaaatgtttccATTTTATCTTTGAAGTAAAGTGTACTTTGATTCCTCCTTCACTTTACAACAGTCATTTATGTGCAAGATCGAAATAAAATGACTATTAAAGCCA

Function

symbol description
exosc1 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA processing. Predicted to be located in nucleolus. Predicted to be part of nuclear exosome (RNase complex). Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human EXOSC1 (exosome component 1).

NR:

description
PREDICTED: exosome complex component CSL4

GO:

id name namespace
GO:0000178 exosome (RNase complex) cellular_component
GO:0005730 nucleolus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K07573 CSL4, EXOSC1; exosome complex component CSL4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793375.1 False 1630 mRNA 0.45 8 17594016 17598848
XM_039793435.1 True 1881 mRNA 0.45 8 17594016 17598644

Neighbor

gene id symbol gene type direction distance location
pkd1a pkd1 coding downstream 69170 17458774 ~ 17524846 (-)
nthl1 nthl1,LOC102778712 coding downstream 165401 17423593 ~ 17428615 (-)
rfx1b NA coding downstream 208985 17369504 ~ 17385031 (-)
si:ch211-196h16.12 LOC101466180,LOC100708390,LOC102193965,LOC103356221,LOC103465598 coding downstream 255398 17334937 ~ 17338618 (-)
LOC120569451 NA coding downstream 302543 17286966 ~ 17291473 (-)
pgam1b pgam1,pgm,LOC104945324,LOC104927840 coding upstream 4058 17602906 ~ 17606302 (-)
avpi1 NA coding upstream 15305 17614153 ~ 17617081 (-)
crtac1a LOC104945331,LOC103368018 coding upstream 42458 17641306 ~ 17647822 (-)
LOC120569316 LOC104945333,LOC102299380,LOC102207980,LOC101475478 coding upstream 58299 17657147 ~ 17676202 (-)
LOC120562183 tekt4 coding upstream 78822 17677670 ~ 17681784 (-)
G5449 NA non-coding downstream 145982 17399905 ~ 17448034 (-)
G5435 LOC104952676 non-coding downstream 243041 17348875 ~ 17350975 (-)
G5430 clg1h19orf53,LOC108236319,LOC103356219,LOC105917105,LOC106917567,LOC102229420,LOC106531096 non-coding downstream 260406 17331757 ~ 17333610 (-)
G5402 NA non-coding downstream 276196 17317276 ~ 17317820 (-)
G5418 NA non-coding downstream 282199 17311570 ~ 17311817 (-)
G5522 NA non-coding upstream 18339 17617187 ~ 17645665 (-)
LOC120560186 NA non-coding upstream 100412 17699260 ~ 17700389 (-)
G5608 NA non-coding upstream 104368 17703216 ~ 17734751 (-)
LOC120560178 NA non-coding upstream 139224 17738072 ~ 17739847 (-)
G5616 NA non-coding upstream 182932 17781780 ~ 17782013 (-)
LOC120569099 NA other downstream 172918 17412053 ~ 17421098 (-)
LOC120558720 NA other downstream 1246094 16345718 ~ 16347922 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 1908377 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 2689787 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 2874914 14712144 ~ 14719102 (-)
LOC120560175 NA other upstream 111791 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 218659 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 237056 17835904 ~ 17848037 (-)
LOC120556582 NA other upstream 281020 17879868 ~ 17881759 (-)
G5930 LOC102307335,LOC101466373 other upstream 1286120 18884968 ~ 18890220 (-)

Expression


Co-expression Network