ugdh (ugdh)


Basic Information

Item Value
gene id ugdh
gene name ugdh
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 26554034 ~ 26559727 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794466.1
GGATTGGTAGTGTACGGTAGTGTACAAGTACGTAAAGGTAAAGGTAGTGCAGGAGACAGTTGTGAGAGAAACGCTGGTGCTGTGAGTTTGTTCGTCGAGCACTAGTTTACATTTTAGTTAAAGACGTTTAACATCGTTTGTAATCGATCACCGGCTCCGGTGTTCCGACGGCTGTTTCGACACATTAACGTTAAAGAGAGGAGCTAACATACTCTGCGCATTCCTGAAGTTGACTGACTGTCGAGTTGGCAGAGATGTTTCAGATAAAGAGGATCTGTTGTATTGGTGCTGGGTATGTAGGAGGCCCAACATGTAGTGTGATCGCCAACATGTGTCCAGAGATCACAGTGACAGTCGTGGATGTCAATGAGTCCCGCATCAAAGCCTGGAACTCGGACACTCTCCCCATATATGAGCCGGGTCTACAAGAGGTGGTTGAATCATGCAGAGGGAGAAATTTGTTTTTCTCTACAGACATAGACTCAGCCATCAGGGACGCAGACCTCGTCTTTATCTCTGTGAACACCCCAACTAAGACCTATGGGATGGGGAAGGGTCGTGCGGCTGACCTTAAGTTCATCGAGGCGTGTGCCCGACGGATCGTGGAGGTATCGGATGGTTACAAGATTGTCACAGAGAAGAGCACCGTCCCGGTTCGAGCTGCTGAGAGCATTAGGCGGATATTTGATGCCAACACCAAGCCCAGCCTCAACCTACAAGTGCTGTCCAACCCAGAGTTCCTCGCTGAAGGAACAGCCGTGCGGGATCTGAAGGAGCCAGAccgcgtcctgattggtggagacGAAACAGCCGAAGGTCAAAGGGCAATCAGAGCGCTGTGTGCCGTCTACGAACACTGGGTCCCCAAAGCACGCATCATCACCACCAACACGTGGTCGTCCGAGCTGTCCAAACTGGCAGCCAATGCATTCCTGGCACAGCGGATCAGCAGCATCAACAGTATCAGTGCTCTCTGTGAGGCCACTGGGGCCGATGTGGAGGAGGTTGCCAAGGCAATTGGTATGGACCAGAGAATAGGCAGCAAGTTTCTCAAAGCCAGCGTAGGTTTTGGTGGAAGCTGTTTCCAGAAGGACGTGCTGAATTTGGTGTACCTGTGCGAGGCCCTCAACCTGCCCGAAGTAGCCTCCTACTGGCAGCAGGTGATCGACATGAATGAGTACCAAAGGCGGCGGTTTGCCTGCAGGATTATTGACTGCCTCTTCAACACTGTTACTGGTAAAAAGCTTGCTCTGCTGGGCTTCTCTTTCAAAAAAgacacaggtgacacaagGGAGTCTTCCAGTATCTACATCTCTAAGTATCTGATGGATGAGGGCGCCAAGCTGTTCATCTATGACCCCAAAGTTCTCAAGGAACAAATAATTCATGACCTCTCCCAGCCCAACATCTCAGAGGACAACCCAGAAAGAGtGTCGGAGCTGGTGACTGTGACCTCAGACCCTTACGAGGCCTGCCAGAGTGCACACGCATTGGTCATCTGCACTGAGTGGGACATGTTTAAGGAGCTGGACTATGAAAAGATTTACAAGAAGATGCTGAAGCCGGCCTTTATATTTGATGGTCGCAGAGTGCTGGACCACCTCCACCCTCACCTCCAGAACATTGGCTTCCAGATCGAGACCATCGGTAAGAAAGTGACCGCAACACGAATTCCCTACActccagcagctgcttgtcctcgCATCGCTGCCAGTGAACCTCCCACCAAGAAAGCCAAAGTCTAAAACTCACTTCAGCTCCTCATACACAACATGCAACACATTCCTCTCTTAACCTTTTTATTGCTGGTACACGCCTAATTATTCGAAAAAGGCCAAAACAGTGTGACTAACTGCTCCCCTGCAGTGGGTCTGAGAGGAAGAAGTTGAGCCTTCAGTCCAATATAGTGTGAATGTGATCCATGAATGTGTTTGAATCTTTGGAAGAGGTTTAGTGATAAACAATCAATAAATGGTTCATTTTCTACATTTCATTTGTCAACCAAACATTTCAGATTCAGCCATAGATGCTACTTTCTGACAGTATGTACTAGATAATTAAGTATCAACAATAATCAACAATTTTatactatttttttaaaatatttttataaatcTTACTGTATGTTGAATCAGTATTTGTTCTATGTATCATTGACCGTTTACTAAAAATGGAGATGCAATAAAATGTGACGTGTGTCCT

Function

symbol description
ugdh Predicted to enable NAD binding activity and UDP-glucose 6-dehydrogenase activity. Acts upstream of or within atrioventricular valve formation; determination of left/right symmetry; and positive regulation of signal transduction. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including axis; head; heart tube; mesoderm; and vestibuloauditory system. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 84. Orthologous to human UGDH (UDP-glucose 6-dehydrogenase).

NR:

description
PREDICTED: UDP-glucose 6-dehydrogenase

GO:

id name namespace
GO:0003188 heart valve formation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0003979 UDP-glucose 6-dehydrogenase activity molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K00012 UGDH, ugd; UDPglucose 6-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794466.1 True 2202 mRNA 0.48 12 26554034 26559727

Neighbor

gene id symbol gene type direction distance location
rpl9 rpl9 coding downstream 7478 26539304 ~ 26546556 (-)
rfc1 rfc1 coding downstream 20916 26519478 ~ 26533118 (-)
LOC120557121 NA coding downstream 118247 26425091 ~ 26435787 (-)
trnap-agg NA coding downstream 141671 26412292 ~ 26412363 (-)
pax5 pax5 coding downstream 317502 26153490 ~ 26236532 (-)
map9 NA coding upstream 659 26560386 ~ 26566438 (-)
pds5a pds5a,LOC102784517 coding upstream 26782 26586509 ~ 26620024 (-)
slit2 slit2,LOC102781928 coding upstream 133618 26693345 ~ 26780248 (-)
ncapg ncapg coding upstream 314986 26874713 ~ 26889605 (-)
haspin NA coding upstream 356655 26916382 ~ 26931485 (-)
G7936 lias non-coding downstream 2128 26550712 ~ 26551906 (-)
G7921 NA non-coding downstream 58269 26492902 ~ 26495765 (-)
G7918 NA non-coding downstream 98251 26455577 ~ 26455783 (-)
G7917 NA non-coding downstream 105048 26448607 ~ 26448986 (-)
G7883 NA non-coding downstream 142727 26307863 ~ 26411307 (-)
G7948 NA non-coding upstream 70054 26629781 ~ 26637840 (-)
G7969 LOC102305077,LOC101481585,LOC102783671 non-coding upstream 123244 26682971 ~ 26690130 (-)
G7971 NA non-coding upstream 180099 26739826 ~ 26787924 (-)
G8023 lcorl non-coding upstream 301460 26861187 ~ 26865281 (-)
G8024 NA non-coding upstream 307698 26867425 ~ 26873605 (-)
LOC120566984 NA other downstream 18298 26533833 ~ 26535736 (-)
adamtsl7 NA other downstream 432385 26112014 ~ 26121649 (-)
polq LOC104947247,LOC104947243,LOC106593755 other downstream 459790 26075397 ~ 26094244 (-)
G7722 LOC103354873 other downstream 544817 26001524 ~ 26009217 (-)
G7603 LOC103353181 other downstream 765805 25783944 ~ 25788229 (-)
smim14 smim14 other upstream 7340 26567067 ~ 26578815 (-)
lonrf1l lonrf1,LOC103360493,LOC102797331 other upstream 722071 27281798 ~ 27294911 (-)
rnf24 rnf24,LOC102778784 other upstream 2746294 29306021 ~ 29339847 (-)
G8701 NA other upstream 3029581 29589308 ~ 29593623 (-)
bnc2 bnc2 other upstream 4016145 30575872 ~ 30744878 (-)

Expression


Co-expression Network