palb2


Basic Information

Item Value
gene id palb2
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 14698682 ~ 14710968 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795113.1
TGCTTCCTTCCTACCGGAGTCATCCATGGAGTCTGTCAGATTGATCGAGTCATCAACGCTCCACTGCTCAAGTCTGTAGGAGGCAGTCGCGGGAAATTGGAACTAAATCGATAACCGATAACCAAAATAAACTTCTCATGGACACACCGGCGGTGCCACTcACGTCCTGGATGTTAGGGCCGAGTGAGCAGATTGCAGAACAGTGTAAAGATAACATGCACTGTGAGGAGCAGCTGAGGACCACGCTACACTGTGATGATAAGGAAAagCTTCGTAGGAAGTTGGCACTGTTACAGAGGGAGTACCTCAGGACAGCTGAGAGGCTACAGCGTGCTGAGCGTTTGGACGCAGTGCGGAAACCTGTGGGGAGCAGGATCAGTCAGCAGGACCAGAGAGACCCAGAGGTGCCATCCAACCCCTGTCCCCACCCATCTTCATTGATACTGAACACCACCAATGGGACAGCCCCAAGAATAGCTCAGTGCCAGAGACACACTGGAGGTCCAGCAGATTTGGATAACTCTGATGCTGCTTGCCCACAAACCCCAGATCCCAGCCATGACACAGCTAAAGGTCACAGATCCACTCCCACCCTGCGCCTCAGGTCTCAGCGCAGCCGCTTGCGCTGGGAAAGGAGGAGTGCTGTCAGGGGCACAGATGACAACAGGGAGGAAGGACGGAGCCAGAGTGAAAGGATGGAGACTGTTAGAACAGAAGGAAGTGGCGAGAGAGTCAAAATGGAGGGAACCGAGGTGGAGAATGAAAGTGAAGAGCTATTTTCTTGTACAGACGCTGAATCTCCGTCTCTGCTGCTTCCACACTGGAACTCTAGTGGTCAAACTGAAACGGGAGATATTGCGGGTAAAGAGATACGAGGCCGACAAAAACAAAGGGAAAAAGAGACGGAGTTGAGAGTGGATGGGAAAATAGAATCGGAGTCAACCTCTTTATTGCTCACATGTTGGAACCCTGCTATACACACTGAAGGAACGGAACAAGATATCacacaaaatggaaaaaataaggagacagaggaaggagaggaaaataGGATTACTAGAGGGCAGACGGATGTAAGGCTGTGTGAAGACAGCagtaataaagacactgaaaaaaatgcagCAGAGGAAATAGAAAGTGAAAAACTTCATGATAAGACAGctgaaataaaagaagaaaaaagggagTTGATTGAAGGAGAGCATGATGTAAAGGGTGTGGGTCTCCTGGACTCCTGTACCCTGGTGGAAGGACTACTTTTCCCAGCGGAGTACTACGTTCGAACCACAAGACGTATGACATTTTCACAGAGTCAGCCTGACATGCAGGCCGTTATACTTTCCCAGCTCAGCGTTGGACGACATCGCCGCGGCAGAGGATTGAACAGGCGCGCACACAACCCTGAACGATCAGGTCAACACGCTGGGACGGGTTTGTCCTCACCGGCGACTGCACCTGTAGATACCCGCATGGAATCCCAGTCTGCTGACACATCTGCTGAGCTGAACAGTCAGAGCTCCAGTGAGATTTCAGATCAAATCTCAGCTTCATGTCATCAGGTCGACGTTGATGCTTGTCTTTCTCCTACGGTCACCACTGCTCGTCCAGCAAGAGGCGGGAGGAAGAGAAGGGGTCGGGGCAGAGGGAGACCTCAGACCCCACGATGCTCTATAGACACCCATCGACTAGGCCTCGGACACACCTCCCACAATCCCCAGCCAACCAGCTCCCCGCTCTCTTCCTCCTCGTCTCTCCATGGAGCTGATGGCCCAAAGCCACGCCTCACTCCGGGAGAAGCTGTCCCAATGCAGGACGACCCCCAGTCTGTGTCTGTCCTCAGCACAGCCACACAGCCTTCCTCTGGAGTTGATGGAGCTCAGGTCAGCTCTGCCTCTGCACAGCATCTGGAAAAGGTCTTTCCCATCTTTCTAAAGAGCAGCGACGCGACCAACGGATCCACACAGATGAGTAGAAGTGCAGCAAGCTTGCAATCTCTCCTCTTGCCCTCCTCTTCACCTGCCCAAACTCCTCTGTTTCCTCTCCCCTGTCTGTCCCCCGGCCCACTGGTCAACAAGCTGATGAACTTTGACATTACGCAAGATTTCCATCTCCCCGATGACCAGTTTGCTTCCCTAAAGCTGCACAAACTCCGCCAAGTTGCTCTGGATTCAGGAGTTGAATATTTTACATCGCCTTCTCACAACTCGCGCAGGAGCAGCCGGCGCTCTGACACCCAGAGCAGCAGTGACACAATGATGCCTCTTCCACTCGCGCTTAGCCTCACGCCCACAATCGCCATCTCACCCCACCCCACTGAACCAGAACAAGCTGCTACACGGCCTGTAGACTTCCAGAACTTGTCAAGAGAGCACAAGCATGAAGAAAAATTGACAAGCCAGTCCTTAACTGAGGGGTCAGCCGAACAAGTGTGTCAGGCTCACACCGCCTCGACAGAATCTGTGCCTGTGGTTCAAGACTGTGCTGCCGACTGTGTCGATCAATACGTAGAGCAAGATACTGCCGTTCTGAATACTCCAAGCCAGAGTAGCGTCTCAGCCAGCAACGCACACAGAACTGTTGACCACCCTGTCAAACCACAGCCTCACATCAACTTTGCAGACAGACCTGCAGGCAAAGTGAATGATTATGTCATCGGGTGCTCAGATGAACTTCAAATAAAAGAGTCTTTCGTCATTTCATCAGAGGAACAAACTGTCTGTCCCGGTGTAGTCCATCCTTTGGAGGATCAGAGGTCTACAAACCACCACACAGAAGACAAAGCTATCATTGAGACTCTCTCCTTAGATTGCCCTGTACAGAAAAGCCCTGAGGAACCTTCTAACAGCCGCACTGCTGTACAGTTGTGTAAGAACAGTGAAGCTCCAGGGGAGTCTCCTGCGCAGCATCTGAATGCTGCCACAGATTCACTTGAAACCACCACAAGTCCTCCCAGAGACAGACTGGTGGGAAATAAAAGTCCAGACTCCACAAGAGTGCTCTCTCAGCTCCTGTTGAGCCCTCCTCTGGCATCAGAAGCCTGCCCCTTCATCACCCCACACCTGccctcctctgctcctcccTACAGCCCCCCACTACCATCCCTAGGactcaccccccacccccctctgaCCTCCTCACCCACTGCCCCACCTCTCACCCTGGCTCCCCGCCTTAGCCCGTCCACCCAGGCCCTCTCCCCTCCAGCTCTCTGTCCTTGTCCGTCCCTCCTCTCTAGCCGGCCCACCACCTCCCCCGCCGGTCGGATCCAGGCTTCACCCGTGCCGTTGTGTACAGATGATCGGAGGGTTGAACCACCTACGGCAGTTTCCAGCATCCAGCCGCAGGGCTCCAGTGGGCAGGTGGGCCTGAGAACAGAGGAGACCGCGGAGGAACACGTGacgagatgcacacacacactgaaggccCCAGCAGGCGGCTGTCTGGTGGATGCATGCTGCCTGCCCGGATCCTCAGGCCATGTGTGTGTCGTAGCAGCCGGAAAGTGGGCCGTGTGTCTCTGGAGTCAGACTTCCGCTTCTGATTGGAGTTTAACACACACCTGGGCCTTCAATGAGCCAGTGATCAGTGTGTTTCCTGTCCCGGATGCTGCTGGGCTGATCTGTGTGACTCTGGGTCAGTTGGAAATCAGAGAAGTGAGGATGCTGTCGTGCTCCAGCCTCTTGCAAGTGCAGCTGTGTGAGGGCGTCGTCCAGACTGTTGTGGGTGCGTCTAAGTCCAGAGTTGTTAGCTCCTCCCACTCAGCGTCTGGTTCCACCCTGCAGGTGTTTACGCTGTCAGACAGTGGCAGcaCATGGAACTCCCAGACTCTCTTGTGTCCTGGCGTTTGTGTCGGGGCCCTCGCTCCAGTGGACGGACTTTCAGATGCTCTGATCGGCACAGATGAGGGCGGAAACCTCTTCGTCTGGAATTTAAAGACTGGACAGCAGCTGCGGAGAATTATCCTCGGAGATGGTTTatcacacacttcctgtctcagAGGATACTCTTACTGTGGAGTGTTGTTTGTCCTGCTGCAGCATCAGTTGCTCAGCTCTCTGGAGGAAGAAGCCAAAGATCAAATGTGTTcaaaagaggaaaggaagaagaCCGCCCTGTTCTCTTTGGTCGCCGTTAACCCTCTGAGTGGAAAATCTGTCCTGGCTACTCGGCTGCATCCACCCAAAGCCTGGTCTGGCAGGCTGTGTGAAGCTGATGTTCACAGCTCCAGCGTGGTTGGCCTGAGTCagagtggctgtgtgtgtgtgtgggacctCGGGCAGCGGGCGACCTCCAGGATGGTGTGGGCTCCTGAGCGCGAAGGCTGGCAGCTGGCTCGATGGGGGGGCGGAGGTACGTTGGTGACTGGACATCACAACGGAGACGTTACTCTACACTGTTACAGTGCGAGTCAGGCTAACCTCTGCCGTCAACGCTGCTTACTTTTATCAAATCAGAATGTCGTTTTGTCATAATATGAATGTTTACATAAAGATTTTAACATCCTAGGCCATCATATTGCTAAGATTaaaacaatatactgtaaattcAAAAAGTCATGGTCTTTATAACGTAACATAACTTCGAGACTGAATGGTTAAAGGTGGAGTGCTTCTAAATTGAACCTCCTCCAGCCTTGCTACACTAATGTTTTTAGAGCGCCAGTATCACACACTCGTGTGAGAATGTTTACTTGATGGTGGATTTTCACTTTTTAGACCACTGTAACCCATAACCACCTTTGTGTTTTATTACTGCTGCTGTTTTGACTGttctttactgtggttacttgAATACATAGttatatttcttatatttaaagaaaaagaaagtttgTTTTCATAATTTACATTAAACATTTGTGAATTCTGTTGTA
>XM_039795121.1
TACCTGCTTCCTTCCTACCGGAGTCATCCATGGAGTCTGTCAGATTGATCGAGTCATCAACGCTCCACTGCTCAAGTCTGTAGGAGGCAGTCGCGGGAAATTGGAACTAAATCGATAACCGATAACCAAAATAAACTTCTCATGGACACACCGGCGGTGCCACTcACGTCCTGGATGTTAGGGCCGAGTGAGCAGATTGCAGAACAGTGTAAAGATAACATGCACTGTGAGGAGCAGCTGAGGACCACGCTACACTGTGATGATAAGGAAAagCTTCGTAGGAAGTTGGCACTGTTACAGAGGGAGTACCTCAGGACAGCTGAGAGGCTACAGCGTGCTGAGCGTTTGGACGCAGTGCGGAAACCTGTGGGGAGCAGGATCAGTCAGCAGGACCAGAGAGACCCAGAGGTGCCATCCAACCCCTGTCCCCACCCATCTTCATTGATACTGAACACCACCAATGGGACAGCCCCAAGAATAGCTCAGTGCCAGAGACACACTGGAGGTCCAGCAGATTTGGATAACTCTGATGCTGCTTGCCCACAAACCCCAGATCCCAGCCATGACACAGCTAAAGGTCACAGATCCACTCCCACCCTGCGCCTCAGGTCTCAGCGCAGCCGCTTGCGCTGGGAAAGGAGGAGTGCTGTCAGGGGCACAGATGACAACAGGGAGGAAGGACGGAGCCAGAGTGAAAGGATGGAGACTGTTAGAACAGAAGGAAGTGGCGAGAGAGTCAAAATGGAGGGAACCGAGGTGGAGAATGAAAGTGAAGAGCTATTTTCTTGTACAGACGCTGAATCTCCGTCTCTGCTGCTTCCACACTGGAACTCTAGTGGTCAAACTGAAACGGGAGATATTGCGGGTAAAGAGATACGAGGCCGACAAAAACAAAGGGAAAAAGAGACGGAGTTGAGAGTGGATGGGAAAATAGAATCGGAGTCAACCTCTTTATTGCTCACATGTTGGAACCCTGCTATACACACTGAAGGAACGGAACAAGATATCacacaaaatggaaaaaataaggagacagaggaaggagaggaaaataGGATTACTAGAGGGCAGACGGATGTAAGGCTGTGTGAAGACAGCagtaataaagacactgaaaaaaatgcagCAGAGGAAATAGAAAGTGAAAAACTTCATGATAAGACAGctgaaataaaagaagaaaaaagggagTTGATTGAAGGAGAGCATGATGTAAAGGGTGTGGGTCTCCTGGACTCCTGTACCCTGGTGGAAGGACTACTTTTCCCAGCGGAGTACTACGTTCGAACCACAAGACGTATGACATTTTCACAGAGTCAGCCTGACATGCAGGCCGTTATACTTTCCCAGCTCAGCGTTGGACGACATCGCCGCGGCAGAGGATTGAACAGGCGCGCACACAACCCTGAACGATCAGGTCAACACGCTGGGACGGGTTTGTCCTCACCGGCGACTGCACCTGTAGATACCCGCATGGAATCCCAGTCTGCTGACACATCTGCTGAGCTGAACAGTCAGAGCTCCAGTGAGATTTCAGATCAAATCTCAGCTTCATGTCATCAGGTCGACGTTGATGCTTGTCTTTCTCCTACGGTCACCACTGCTCGTCCAGCAAGAGGCGGGAGGAAGAGAAGGGGTCGGGGCAGAGGGAGACCTCAGACCCCACGATGCTCTATAGACACCCATCGACTAGGCCTCGGACACACCTCCCACAATCCCCAGCCAACCAGCTCCCCGCTCTCTTCCTCCTCGTCTCTCCATGGAGCTGATGGCCCAAAGCCACGCCTCACTCCGGGAGAAGCTGTCCCAATGCAGGACGACCCCCAGTCTGTGTCTGTCCTCAGCACAGCCACACAGCCTTCCTCTGGAGTTGATGGAGCTCAGGTCAGCTCTGCCTCTGCACAGCATCTGGAAAAGGTCTTTCCCATCTTTCTAAAGAGCAGCGACGCGACCAACGGATCCACACAGATGAGTAGAAGTGCAGCAAGCTTGCAATCTCTCCTCTTGCCCTCCTCTTCACCTGCCCAAACTCCTCTGTTTCCTCTCCCCTGTCTGTCCCCCGGCCCACTGGTCAACAAGCTGATGAACTTTGACATTACGCAAGATTTCCATCTCCCCGATGACCAGTTTGCTTCCCTAAAGCTGCACAAACTCCGCCAAGTTGCTCTGGATTCAGGAGTTGAATATTTTACATCGCCTTCTCACAACTCGCGCAGGAGCAGCCGGCGCTCTGACACCCAGAGCAGCAGTGACACAATGATGCCTCTTCCACTCGCGCTTAGCCTCACGCCCACAATCGCCATCTCACCCCACCCCACTGAACCAGAACAAGCTGCTACACGGCCTGTAGACTTCCAGAACTTGTCAAGAGAGCACAAGCATGAAGAAAAATTGACAAGCCAGTCCTTAACTGAGGGGTCAGCCGAACAAGTGTGTCAGGCTCACACCGCCTCGACAGAATCTGTGCCTGTGGTTCAAGACTGTGCTGCCGACTGTGTCGATCAATACGTAGAGCAAGATACTGCCGTTCTGAATACTCCAAGCCAGAGTAGCGTCTCAGCCAGCAACGCACACAGAACTGTTGACCACCCTGTCAAACCACAGCCTCACATCAACTTTGCAGACAGACCTGCAGGCAAAGTGAATGATTATGTCATCGGGTGCTCAGATGAACTTCAAATAAAAGAGTCTTTCGTCATTTCATCAGAGGAACAAACTGTCTGTCCCGGTGTAGTCCATCCTTTGGAGGATCAGAGGTCTACAAACCACCACACAGAAGACAAAGCTATCATTGAGACTCTCTCCTTAGATTGCCCTGTACAGAAAAGCCCTGAGGAACCTTCTAACAGCCGCACTGCTGTACAGTTGTGTAAGAACAGTGAAGCTCCAGGGGAGTCTCCTGCGCAGCATCTGAATGCTGCCACAGATTCACTTGAAACCACCACAAGTCCTCCCAGAGACAGACTGGTGGGAAATAAAAGTCCAGACTCCACAAGAGTGCTCTCTCAGCTCCTGTTGAGCCCTCCTCTGGCATCAGAAGCCTGCCCCTTCATCACCCCACACCTGccctcctctgctcctcccTACAGCCCCCCACTACCATCCCTAGGactcaccccccacccccctctgaCCTCCTCACCCACTGCCCCACCTCTCACCCTGGCTCCCCGCCTTAGCCCGTCCACCCAGGCCCTCTCCCCTCCAGCTCTCTGTCCTTGTCCGTCCCTCCTCTCTAGCCGGCCCACCACCTCCCCCGCCGGTCGGATCCAGGCTTCACCCGTGCCGTTGTGTACAGATGATCGGAGGGTTGAACCACCTACGGCAGTTTCCAGCATCCAGCCGCAGGGCTCCAGTGGGCAGGTGGGCCTGAGAACAGAGGAGACCGCGGAGGAACACGTGacgagatgcacacacacactgaaggccCCAGCAGGCGGCTGTCTGGTGGATGCATGCTGCCTGCCCGGATCCTCAGGCCATGTGTGTGTCGTAGCAGCCGGAAAGTGGGCCGTGTGTCTCTGGAGTCAGACTTCCGCTTCTGATTGGAGTTTAACACACACCTGGGCCTTCAATGAGCCAGTGATCAGTGTGTTTCCTGTCCCGGATGCTGCTGGGCTGATCTGTGTGACTCTGGGTCAGTTGGAAATCAGAGAAGTGAGGATGCTGTCGTGCTCCAGCCTCTTGCAAGTGCAGCTGTGTGAGGGCGTCGTCCAGACTGTTGTGGGTGCGTCTAAGTCCAGAGTTGTTAGCTCCTCCCACTCAGCGTCTGGTTCCACCCTGCAGGTGTTTACGCTGTCAGACAGTGGCAGcaCATGGAACTCCCAGACTCTCTTGTGTCCTGGCGTTTGTGTCGGGGCCCTCGCTCCAGTGGACGGACTTTCAGATGCTCTGATCGGCACAGATGAGGGCGGAAACCTCTTCGTCTGCTTCATCCGAGTCTCCTGAAGTTGCCGCGCAGGCGCACTGCGTAGCCTACAACGTACGTTTCTTGAAGTTGGAATCATGGCGGAAGGAGGAAATGACAGCGCTCAAGACATTTATCAGTCTAttgcctatatttttg

Function

NR:

description
PREDICTED: partner and localizer of BRCA2

GO: NA

KEGG:

id description
K10897 PALB2, FANCN; partner and localizer of BRCA2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795113.1 True 4873 mRNA 0.52 13 14698682 14710964
XM_039795121.1 False 4066 mRNA 0.54 11 14702708 14710968

Neighbor

gene id symbol gene type direction distance location
iqce NA coding downstream 34607 14647019 ~ 14664075 (-)
LOC120567658 LOC103373371,LOC101468855,LOC102204912,LOC104921159,LOC102786911 coding downstream 52830 14616189 ~ 14645852 (-)
LOC120567649 LOC103373062,LOC102206023,LOC101469992,LOC102313636,LOC102077197,LOC102776633 coding downstream 108066 14557895 ~ 14590616 (-)
mad1l1 mad1l1 coding downstream 182846 14442379 ~ 14515836 (-)
parn parn,LOC103366231,LOC102788671 coding downstream 445835 14242155 ~ 14252847 (-)
LOC120567499 NA coding upstream 94782 14805750 ~ 14807316 (-)
LOC120562191 NA coding upstream 100374 14811342 ~ 14824896 (-)
sh2d3a sh2d3a,LOC104966618 coding upstream 145398 14856366 ~ 14876182 (-)
smcr8b NA coding upstream 329879 15040847 ~ 15052712 (-)
mief2 mief2,LOC102193621,LOC100697825 coding upstream 343483 15054451 ~ 15063940 (-)
G4450 NA non-coding downstream 259019 14439456 ~ 14439663 (-)
G4443 NA non-coding downstream 401230 14297089 ~ 14297452 (-)
LOC120558606 NA non-coding downstream 589989 14105951 ~ 14108693 (-)
LOC120558586 NA non-coding downstream 619683 14078317 ~ 14078999 (-)
LOC120558581 NA non-coding downstream 627135 14067848 ~ 14071547 (-)
G4566 NA non-coding upstream 139993 14850961 ~ 14852833 (-)
G4658 NA non-coding upstream 258513 14969481 ~ 14970706 (-)
G4659 actbb,LOC102799139,LOC103383494,LOC102218394,LOC101168921,LOC108244554,LOC106519625 non-coding upstream 260412 14971380 ~ 14973191 (-)
G4663 NA non-coding upstream 288173 14999141 ~ 14999689 (-)
G4670 NA non-coding upstream 301957 15012925 ~ 15013189 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 656172 14018902 ~ 14042510 (-)
G4168 NA other downstream 1131416 13531753 ~ 13567266 (-)
LOC120560438 dnal4,LOC108261343,LOC106591471,LOC108436609,LOC108412416 other downstream 1658402 13037270 ~ 13040280 (-)
LOC120560419 LOC103368013,LOC106919771,LOC106522471 other downstream 1670289 12990564 ~ 13028393 (-)
trnac-gca_3 NA other downstream 1832643 12865968 ~ 12866039 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other upstream 1176 14712144 ~ 14719102 (-)
ubl5 ubl5 other upstream 190178 14901146 ~ 14904229 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other upstream 715576 15426544 ~ 15685639 (-)
LOC120558720 NA other upstream 1634750 16345718 ~ 16347922 (-)
LOC120569099 NA other upstream 2701085 17412053 ~ 17421098 (-)

Expression


Co-expression Network