npb (npb)


Basic Information

Item Value
gene id npb
gene name npb
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17152922 ~ 17154504 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795539.1
AGTCAGCCTATATAAGAAGCAGAAAGTTTTCCAAACACCCATCAAAACATAAAGTCGGCCTCTGACCAACAACAGACGAGAAAAGCGCCGTTTTCCTTTGCGTAAAAAAAGTCAAGACATGGAGAGGTCAGTCAGATTTGCCGTGGTGTGCGTCGGAGTGTCTCTGCTCATCTCCTGCCATCCAGTCGAAGCCTGGTACAAGCAGTCGACCGGGCCCAGTTACTATTCGGTGGGTCGTGCCTCCGGTTTGCTGTCCGGTATCAGGAGGTCGCCTTACGTCCGGAGGTCCGAGTCCGAAGAGACGCTGATGGACAGCGGGGAGACAGCAGGTAACACCGTTCTTCAAGAGACTAACAGGCAGATCTCCATCCTCAAAAACATGGCCATCTGCGTGAAAGACATCTCTCCAAACCTGAAGAGCTGCGAGCTGCTGCGGGACGGGACGGGCACCTTCCAGTGCAAGGCGGACGTCTTCCTCACTCTGGACTCCCTGGACTGCCTGTCCGCGTGAGTCCCGTTCCTCCACCCAGCCCCGGGAGCGCTTCCCTGGacatgaaaaacaaagaaaaggaatgggtgtgtgtggggggttgaTGGCGCGGAGGAAAACCTGATCACCGTCGACGATGGACTGCCGCAGACTCTGAATGTTctcttatttaaaaacaaaaaacaaaaactcaaacattgttttgttttactttggTTATGTAGACAggagtataaaagtaaaaaaaaaaaaaaaaataactgtgcAAGAGAGGTTAGTTGAAACTTGAATCTTGTTTCCATTGTTGCTGTTTAACTCCAGACATGTACCCTCCTTTggcaaaatgtattaaatatccAGAAAGTTGACTGCAGAGCAGATTTCCTGGAaagtacttttatttattttatctattAAAATGAACAAACACTGGTAACCTGTTA

Function

symbol description
npb Predicted to enable G protein-coupled receptor binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway and feeding behavior. Predicted to act upstream of or within neuropeptide signaling pathway. Predicted to be located in extracellular region. Is expressed in head mesenchyme; nervous system; and neural tube. Orthologous to several human genes including NPB (neuropeptide B).

NR:

description
PREDICTED: neuropeptide B isoform X2

GO: NA

KEGG:

id description
K05267 NPB; preproneuropeptide B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795539.1 True 933 mRNA 0.47 2 17152922 17154504

Neighbor

gene id symbol gene type direction distance location
notum1b notum,LOC103356199,LOC102201337,LOC102290801,LOC107090768 coding downstream 157281 16985394 ~ 16995641 (-)
tmc8 LOC103356194 coding downstream 186697 16957612 ~ 16966225 (-)
LOC120556225 NA coding downstream 195590 16946866 ~ 16957332 (-)
syngr2b syngr2,LOC107090770 coding downstream 207060 16936801 ~ 16945862 (-)
afmid afmid,LOC102792082 coding downstream 228324 16907096 ~ 16924598 (-)
sgsh sgsh coding upstream 1227 17155731 ~ 17161156 (-)
LOC120559819 NA coding upstream 92045 17246549 ~ 17256447 (-)
LOC120569451 NA coding upstream 132462 17286966 ~ 17291473 (-)
si:ch211-196h16.12 LOC101466180,LOC100708390,LOC102193965,LOC103356221,LOC103465598 coding upstream 180433 17334937 ~ 17338618 (-)
rfx1b NA coding upstream 215000 17369504 ~ 17385031 (-)
G5361 pcyt2,LOC103356210 non-coding downstream 30704 17114975 ~ 17122218 (-)
G5270 NA non-coding downstream 71525 17079161 ~ 17081397 (-)
G5268 NA non-coding downstream 73904 17076316 ~ 17079018 (-)
G5269 NA non-coding downstream 78902 17071797 ~ 17074020 (-)
G5267 NA non-coding downstream 81194 17070177 ~ 17071728 (-)
G5375 LOC102309293 non-coding upstream 23895 17178399 ~ 17185803 (-)
G5376 NA non-coding upstream 28143 17182647 ~ 17186382 (-)
G5393 NA non-coding upstream 94481 17248985 ~ 17251464 (-)
G5418 NA non-coding upstream 157066 17311570 ~ 17311817 (-)
G5402 NA non-coding upstream 162772 17317276 ~ 17317820 (-)
LOC120558720 NA other downstream 805000 16345718 ~ 16347922 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 1467283 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 2248693 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 2433820 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 3110412 14018902 ~ 14042510 (-)
LOC120569099 NA other upstream 257549 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 556135 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 663003 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 681400 17835904 ~ 17848037 (-)
LOC120556582 NA other upstream 725364 17879868 ~ 17881759 (-)

Expression


Co-expression Network