sgsh (sgsh)


Basic Information

Item Value
gene id sgsh
gene name sgsh
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17155731 ~ 17161156 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795568.1
GAATACAAATGGTCCAAAAACCGTCTGGCACACAGCTCTACTCGCCACGTTATGTACGTTAGGTAATAACTGTGATGACTgaattaatattatttattgaatgtaattgttttgaCTCACATTAAATGTTTCAAAGCCGAACCAGAAATCATTTTGAGACTAGATTAGTAGGCGAGATCTAAACCGTCAAAAGGGCTAATCATCGTCGTTACGACCATGCTGCTTGAgttgttttttctcattttggcATCATGTTGCATCGGGGAGTCAAAGAGAAGAAATGTCCTTCTAATAATTGCTGATGATGCAGGTTTTGAGACGGAGGTGTATAACAACTCTGTGGTCCACACCCCCCACCTGCGCTCTCTGGCCCAGCGTAGCCTGGTGTTCAGCAACGCCTTCACCTCTGTCAGCAGCTGCTCCCCCAGTcgctccaccatcctcaccggcctgccacagCACCAGAACGGCATGTACGGGCTTCATCAGGGTGTTCACAATTTCAACTCGTTTGACGGAGTACAAAGTCTGCCGCTGCTCCTCAGCCAAGCCAACGTACACACAGGTATAATTGGGAAGAAGCATGTCGGTCCTGGATCTGTATACCCTTTTGATTTTGCCTACACTGAAGAGAACAACTCTGTCCTCCAGGTGGGGAGGAACATCACCCGTATCAAACTCCTGGTCCGAAAGTTTTTCCAGACACATAACCAAGAAGCCTTTGAACGAAGGCGAAAGAAAGACGAgaataaagaaaatgtgaaagaTGAAGAGAAGCCGTTTTTCCTGTATGTtgcctttcatgacacccacCGATGTGGACACTCGCAGCCCCAGTATGGAGCTTTCTGTGAGAAGTTTGGGAATGGTGAAATGGGGATGGGTAGAATACCGGACTGGACCCCAGAATATTACACACCAGAACAAGTAAAGGTTCCTCCTTTTGTGCCAGACACACCTGCGGCACGAGCCGACTTGGCTGCACAGTACACCACGGTTAGCAGGCTGGACCAAGGTATCGGTTTGGTTCTTCAGGAGCTCAGGGACGCTGGTTATGAGAACGACACTCTGGTCATCTACAGCTCCGATAACGGCATCCCCTTTCCGAACGGCAGAACCAACCTGTATCGCTCTGGGACAGCAGAGCCCATGCTGGTGTCTTCTCCAGAGCACAGGGAGCGATGGGGAGACACCAGCCAGGCCTACGTCAGCCTGCTGGACATCACTCCCACCATTCTGGAATGGTTCTCTGTTCCCTATCCATCCTACAGCCTCCCCGGCAGCCCCGCCACCCTGGTTCACCTCACCGGTCGCTCCTTACTGCCTGCTCTGGTCGCTGAGCCCGGCAGCTGGCACACCGTCTACGCCAGCCAGTCCCTTCACGAGGTAACCATGTACTACCCAACCCGCTCCGTCCACCAGGGGGCGTACCACCTTCTCCACAACCTACACTACCGCATGCCCTTCCCCATCGACCAGGACCTGTACGTGTCACCCACCTTCCAGGACCTGCTGAACCGCACGAGGCTGAGTGAGCCCACGCACTGGTTCAAAAGCCTGGAGCAGTATTACTACAGAGAGCGCTGGGAGCTGTTCGACTCCAGGACAGACCCACTGGAAACGAGGAACCTGGTATCAGACCCAAACTACAGCGCCGTGCTGGAGAGCCTGAGGCAGAGTCTGCAGAAGTGGCAGTGGGAGACGGGGGACCCCTGGGTCTGTGGACCTGACTACGTCCTGGAGGACAAACTAGAGCCACACTGCAGACCACTCTACAATGGACTCTGATGGACACTACTGGTGCTTTGACTCATCTTGATCGACACGATGTCCACGCACATGAACACATTCttctttataaaataaataacattcatatgtagttttatttttgtatgtcaGTGCTACTTTTTTAATTctaaaaataaacttaaattgCCTTAATTCCTAA

Function

symbol description
sgsh Predicted to enable N-acetylglucosamine-6-sulfatase activity; N-sulfoglucosamine sulfohydrolase activity; and glycosaminoglycan binding activity. Predicted to be involved in glycosaminoglycan catabolic process and heparan sulfate proteoglycan catabolic process. Human ortholog(s) of this gene implicated in mucopolysaccharidosis III and mucopolysaccharidosis type IIIA. Orthologous to human SGSH (N-sulfoglucosamine sulfohydrolase).

NR:

description
PREDICTED: N-sulphoglucosamine sulphohydrolase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG:

id description
K01565 SGSH; N-sulfoglucosamine sulfohydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795568.1 True 1951 mRNA 0.51 9 17155731 17161156

Neighbor

gene id symbol gene type direction distance location
npb npb coding downstream 1227 17152922 ~ 17154504 (-)
notum1b notum,LOC103356199,LOC102201337,LOC102290801,LOC107090768 coding downstream 160090 16985394 ~ 16995641 (-)
tmc8 LOC103356194 coding downstream 189506 16957612 ~ 16966225 (-)
LOC120556225 NA coding downstream 198399 16946866 ~ 16957332 (-)
syngr2b syngr2,LOC107090770 coding downstream 209869 16936801 ~ 16945862 (-)
LOC120559819 NA coding upstream 85393 17246549 ~ 17256447 (-)
LOC120569451 NA coding upstream 125810 17286966 ~ 17291473 (-)
si:ch211-196h16.12 LOC101466180,LOC100708390,LOC102193965,LOC103356221,LOC103465598 coding upstream 173781 17334937 ~ 17338618 (-)
rfx1b NA coding upstream 208348 17369504 ~ 17385031 (-)
nthl1 nthl1,LOC102778712 coding upstream 262437 17423593 ~ 17428615 (-)
G5361 pcyt2,LOC103356210 non-coding downstream 33513 17114975 ~ 17122218 (-)
G5270 NA non-coding downstream 74334 17079161 ~ 17081397 (-)
G5268 NA non-coding downstream 76713 17076316 ~ 17079018 (-)
G5269 NA non-coding downstream 81711 17071797 ~ 17074020 (-)
G5267 NA non-coding downstream 84003 17070177 ~ 17071728 (-)
G5375 LOC102309293 non-coding upstream 17243 17178399 ~ 17185803 (-)
G5376 NA non-coding upstream 21491 17182647 ~ 17186382 (-)
G5393 NA non-coding upstream 87829 17248985 ~ 17251464 (-)
G5418 NA non-coding upstream 150414 17311570 ~ 17311817 (-)
G5402 NA non-coding upstream 156120 17317276 ~ 17317820 (-)
LOC120558720 NA other downstream 807809 16345718 ~ 16347922 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 1470092 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 2251502 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 2436629 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 3113221 14018902 ~ 14042510 (-)
LOC120569099 NA other upstream 250897 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 549483 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 656351 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 674748 17835904 ~ 17848037 (-)
LOC120556582 NA other upstream 718712 17879868 ~ 17881759 (-)

Expression


Co-expression Network