tmed1b (LOC104964575,LOC104925388,LOC103362227,LOC101073760)


Basic Information

Item Value
gene id tmed1b
gene name LOC104964575,LOC104925388,LOC103362227,LOC101073760
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 18624108 ~ 18629125 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795885.1
CATCCAATCACAACATCGCAAAGTTCAGCTGCGGAAGAGAGATGAGAAGGAGATGGCTGAACTTAGATAGCCCTGTATTTGGGAATATCTTCACCATGGATCTTCTCCGTATGAAAGAGGGATGCGGAGTACGACTGCTTGTCCTTGCAGTAGTGTTTGGGTGGTGTTTAGGGTCTGTGAGCTGTTTCGGACAGAACCTAGACAGCGAGTTCACGTTTCTGCTACAAGCCGGAAGATCCGAGTGTTTCTTTCAAACAGCAATAAAGAATGGTACGATGGAGGTCGAATATCAGgtgatAGCAGGTGCTGGTATGGATGTAGACTTCACCATCATCTCTCCAGAAGGCATCCACCTCATCTTTGAGTCTCGGCGCTCTGACGGAGTCCACGTGGTGGAGCCTACGGTGGAGGGAGACTATGAAATCTGCTTTGACAACAGCTTCAGTCGCTTCTCAGAGAAGATGGTGTTCTTCGAGATCATCATCGAGGGTCAAGGAGGAGATGTGGGTGGAGATGAAGAGTGGATGGGAGTAGAGGAGCCCGATGGAAGCCTCCTGGAGTACAAGCTGGAGGACATCCGGGAGTCCATGGACTCTCTGCACAGACGCTTGGAGCGCAGCCGGCAGATGCAGACGGTGTTGCGGGCTTTTGAGGCACGGGATCGAAACCTTCTGGAAGACAACCTGTGGAGGGTCTCATTCTGGTCCTGTGCCTGTGTACTGGTGATGCTGTGTGTGGCACTTACCCAGGTTTACACTGTCCGTAAACTGTTCGATGATAAGCGGAGGGTCTGCACATAGACGGATTATTTTGCAGGAGAACAATCCAATACAAGATGTTTGGCTGGTTACCCATTCAGActatgctccactatgttccaTTTAGTCTCCATGAATACCAGCATTCAACATCAGTGTTAGTGGAtcttttttactttgaaaatgtTGTTTTAGATCGGTTTGTGAGCAATAATTAAATATGATTAGATCATGAAGGGTAGCCAGGTGAGGAAATTCAAGTtggttatttctatttatttgtttaaaagaacacgccgacttattgggactttagcttattcaccgtaacccccagagttagataagtccatacatacccttctcatctccatgcgtgttGATAGAACTGTAACTCTGTCCGACGGCTCCACCGGTAGCACGGATCCTGAAGGTAatcggttccaactagcctactgctccgaataaatgacaaaataacgccaacatgttcctatttacatgttgtgatttgtatagttaCAGAatatacaaataacaaggtcacatgagacacagccatcttctaaccatatataaactgggaactatattctcagataggcgaagcactgctacttctgctacttgggcaagagagtagcagtgcttcaataagtcggcgtgttcctttaatgccTTTTCAAATCATACCACAAACCAATGaggaaatacattttgaaaggcACTGCCTACATAGACAGaacaataaatgtagtataACTGCTGTCCTATGTTTCTGAAACTGGTGAGTGGTTTTAGGATTTTTTCTTGAAAGGTGAAATTATTCCTACTAAAGGTAAGAGGTCAGTAATGTGACACAACTCAAAAACTGATCCACAGAGCTCCTATTCAGCTGGTTTAGAAGGGATGACGATGTGCAATAGTGTTGTTGGCGTATTTGTTCTTCCTACGGTTTAAGGTCTTTCCATTATATTAGTGATCTGTCCATCTGACCAGGTGTTTCCTTGGTTACAATCGTGTTGATGGTTAGTTCTTTTGAGATGTTACTGATTTTTCTTTTCACGTGCCAGTTCAAGTCTATGCTGACGTGTTGACAAATAAGAATGTAGAATAAGAAAGAGGGTTGATTTGCAGTGATTGCCagtaatgtactgtaatgtgtcAATACTCTTCCAGTTTGTAGCATATGTGTATGTCAGTTCATTTATCAGGATAATTCAGTGTAAACATACTGATTGTttgatgtgtgttgtgtgtcactGGCTTCTGTTCGATCTTCTAGATGAtcaaacttgtttgtttttttccagatgtatgtttgacattttgattCTGATCAGACAGCCactgagtgttttttttctttttcataagAACAGGCTTTCATTACATATTCAATAGAATATGTAAAAATCAGGTTTACATGAgattcattattattaaatgcattttttacaCAGGTTA

Function

NR:

description
PREDICTED: transmembrane emp24 domain-containing protein 1-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20348 TMED1; p24 family protein gamma-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795885.1 True 2225 mRNA 0.42 5 18624108 18629125

Neighbor

gene id symbol gene type direction distance location
tecrb tecr,LOC107390378 coding downstream 71274 18539663 ~ 18552834 (-)
b3gntl1 b3gntl1,LOC105924764 coding downstream 811533 17794352 ~ 17812575 (-)
LOC120563097 LOC104965080,LOC103373413,LOC102785880,LOC100703819,LOC102203376 coding downstream 835128 17782589 ~ 17788980 (-)
LOC120560193 NA coding downstream 844831 17773284 ~ 17779277 (-)
LOC120560200 NA coding downstream 855933 17766923 ~ 17768175 (-)
LOC120571862 NA coding upstream 17034 18646159 ~ 18648400 (-)
LOC120557593 LOC103362234 coding upstream 46283 18675408 ~ 18702209 (-)
LOC120567401 nxnl1,LOC103362235,LOC101486728 coding upstream 73313 18702438 ~ 18705754 (-)
LOC120567388 LOC100712387,LOC102193985,LOC102310568,LOC101487876 coding upstream 76279 18705404 ~ 18710720 (-)
LOC120563085 colgalt1,LOC102311502,LOC100712117,LOC103362237 coding upstream 83811 18712936 ~ 18726750 (-)
G5809 NA non-coding downstream 36572 18584673 ~ 18587536 (-)
G5801 NA non-coding downstream 48777 18575017 ~ 18575331 (-)
G5800 NA non-coding downstream 49854 18574050 ~ 18574254 (-)
LOC120559135 NA non-coding downstream 50957 18569244 ~ 18573151 (-)
G5787 NA non-coding downstream 84454 18539322 ~ 18539654 (-)
G5894 NA non-coding upstream 1151 18630276 ~ 18689045 (-)
LOC120545674 NA non-coding upstream 34819 18663944 ~ 18664507 (-)
G5921 LOC103372008 non-coding upstream 207152 18836277 ~ 18857539 (-)
G5926 LOC103372008 non-coding upstream 245750 18874875 ~ 18875738 (-)
G5935 NA non-coding upstream 301131 18930256 ~ 18930500 (-)
LOC120556582 NA other downstream 742349 17879868 ~ 17881759 (-)
LOC120556682 NA other downstream 776071 17835904 ~ 17848037 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other downstream 788347 17817507 ~ 17835761 (-)
LOC120560175 NA other downstream 910210 17710639 ~ 17713898 (-)
LOC120569099 NA other downstream 1203010 17412053 ~ 17421098 (-)
G5930 LOC102307335,LOC101466373 other upstream 255843 18884968 ~ 18890220 (-)
mcrip2 mcrip2,LOC104963804 other upstream 342845 18971970 ~ 18982318 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other upstream 394091 19023216 ~ 19037081 (-)
G6084 NA other upstream 860463 19489588 ~ 19545927 (-)
LOC120569510 NA other upstream 1135768 19764893 ~ 19765387 (-)

Expression


Co-expression Network