LOC120556437 (mcoln1)


Basic Information

Item Value
gene id LOC120556437
gene name mcoln1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 22216256 ~ 22238860 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796054.1
AAGGAAGACAGTTGGAGACAACGACAACGTAGCAGCTCCGCCCGGttgctgtgtgctgtgtgagCTGTAAACATTAGAGCATTAGAACAGTTACTGGAGTTTTAGCTATATGAGTTAcctatttattgttttattaaacgGATCACTAACGTACATGGCTGCGACAGGACACCAGACCTGCTCAGaacgAGAAGGCCTGTCCAGCTCAGTAACTTACTATGGCTCCACAGACAGCAGCGGAGAGCATGACCATCAGAGTAACGATCAATGCAACAACCATAGCAACCATCTGTTTCCCACGACGACGGCAGGTCATTGGGCTGATGCGGAAGAGGAGGCCATTCGCAGGAAGTTGAAATACTTCTTCATGAGCCCTTGTGATAAATATTACGCCAAGGGCCGCAAGCCTTACAAGCTGATCCTGCAGCTGCTCAAGATCATTATTGTCACAGCTCAGTTAGTGCTGTTTGGCCTCAGCAACCAGGTGGTGGTGACGTTCAAGGAGGAGAACACCATGACCTTCAAGCACCTCTTCCTCAAAGACTACGACGAGTCCTCAGACGACTCCTTTGCTGTTTACACGCAGAACGACGTCTACGACCACATGTTCTACGCCGTGGAGCAGTATCTGGCCTTACGGGAGACCACAGTGGGACGCTATGCATACGTCTACGGTGTTGGTGTGAACAACAGTGCGCTCTCCCTCTGCCAACAGTACTACAAGAAGGGAAGCATCGACCCAGCCAATGACACCTTCAGTATAGACCCTCATGTCGTCACAGACTGTATAGGTGTGGACCCGCTGGCGGTCCCTCCAGCTTCGCTCACCAGCAGCTACAAGAACTTTACACTCAAGTTCCACAAgcTCATTAACGTCACCATAGAGTTCCAGTTGAAAGCGATCAATATACAGACCATCATCAACAATGAGATCCCAGATTGCTACACTTTTTACATAACGATAATCTTGGACAACAAGGCTCACAGCGGCAAGGTGAAGATCCGGTTAGAAAACCAGGCGTCAATAAAGGAGTGTAAAGACCCGAGCGTCTCTGGACATGGTGAGATGACTGAGAACTATGCTCGTGTAGCGTTTGATGTCGCTGTGGCTCTGGTGTGCATGCTGTCACTGCTGCTGTGTGGACGCTCCATACTGCGAGGCATCATGCTGCAACAGGAGTTTGTGCAGTTCTTTAGGGAGACTCTGGATCGTAAAGTGTGCTGGGCAGACCGGTTGGAGTTCATTAACGGATGGTATATCCTCCTTATCATCAGCGACATCCTCACCATCACTGGCAGCTTCATCAAAATCGGCATTGAGTCTAAGAATATGTCCTCATACGACTTATGCGGCATCCTGTTGGGAACCTCCACACTCTTGGTGTGGGTCGGAGTAATTCGCTATCTCACATTCTTCCAGAAGTACAATATCCTGATCGTGACACTTCGAGCAGCGTTTCCCAATGTGATTCGGTTCTGCTGCTGCGTGGCCGTCATCTATCTGGGCTACTGCTTCTGTGGCTGGATCGTCCTGGGACCATACCACGTCAAGTTCCGTTCTCTGTCCATGGTGTCCGAGTGCCTGTTTTCTCTCATCAACGGGGACGACATGTTTGTGACGTTCGCGGGGATGCAGGAGAGCAGCACTCTGGTGTGGCTGTTTAGCCAGGTTTACCTGTACACCTTCATCTCCCTCTTCATCTACATGGTGCTGTCGCTGTTTATTGCGCTCATCACAGGAGCCTACGAGACCATCAAGCACCAAACCCAAGAACCAATGCACATCACAGACCTGCATGCCTTCATAGCAGAGTGTACAGACGCACCTAACTCTGGGAAGTTCAGAGGTGTGGAGACCTCGCCGTGCTCCTTCTTCTGCTGCTGTGACAGAACAACGACATATGAGGACGTCCTGCTGGTGAACTGAGGTTGACCTCAGTGACCTCAAAAGCCTCACCATCCTCCCCTGCTGACCACAGGGATACACTGCACTCCTGACGCCCAGTGTCTCTGTACCAGCATGCTGTATCTGGGTCAAACCTCGTTACTCATTTGAGGGAGGAGACACCATCAGCTGGACCAGCACTCTGTTGAAGGAATGTCTAACAGCAGTCTTCTTGTTGGACCTCTTATCTTGTCTGTCTATGAAGAAGAAACTGAGGGCTGATGCAGAAATTGGCCTGTCCTCTGTATGGACAGGACATAAGCATCCTGAATGACTAATGCACAGACGCTTCTCTGTTCCTtggtttttaaaagaaaacagtaTCTTTTCCAATGTATTTAAAGGTGAAGTATGTAATACTGtgtaaaatagttactgcagtacaaattcaaaatactggagagagtcgtctcccccgccttctcctccccagactcgaagttgacggaggttgccaggctgagac
>XM_039796063.1
AAGGAAGACAGTTGGAGACAACGACAACGTAGCAGCTCCGCCCGGttgctgtgtgctgtgtgagCTGTAAACATTAGAGCATTAGAACAGTTACTGGAGTTTTAGCTATATGAGTTAcctatttattgttttattaaacgGATCACTAACGTACATGGCTGCGACAGGACACCAGACCTGCTCAGaacgAGAAGGCCTGTCCAGCTCAGTAACTTACTATGGCTCCACAGACAGCAGCGGAGAGCATGACCATCAGAGTAACGATCAATGCAACAACCATAGCAACCATCTGTTTCCCACGACGACGGCAGGTCATTGGGCTGATGCGGAAGAGGAGGCCATTCGCAGGAAGTTGAAATACTTCTTCATGAGCCCTTGTGATAAATATTACGCCAAGGGCCGCAAGCCTTACAAGCTGATCCTGCAGCTGCTCAAGATCATTATTGTCACAGCTCAGTTAGTGCTGTTTGGCCTCAGCAACCAGGTGGTGGTGACGTTCAAGGAGGAGAACACCATGACCTTCAAGCACCTCTTCCTCAAAGACTACGACGAGTCCTCAGACGACTCCTTTGCTGTTTACACGCAGAACGACGTCTACGACCACATGTTCTACGCCGTGGAGCAGTATCTGGCCTTACGGGAGACCACAGTGGGACGCTATGCATACGTCTACGGTGTTGGTGTGAACAACAGTGCGCTCTCCCTCTGCCAACAGTACTACAAGAAGGGAAGCATCGACCCAGCCAATGACACCTTCAGTATAGACCCTCATGTCGTCACAGACTGTATAGGTGTGGACCCGCTGGCGGTCCCTCCAGCTTCGCTCACCAGCAGCTACAAGAACTTTACACTCAAGTTCCACAAgcTCATTAACGTCACCATAGAGTTCCAGTTGAAAGCGATCAATATACAGACCATCATCAACAATGAGATCCCAGATTGCTACACTTTTTACATAACGATAATCTTGGACAACAAGGCTCACAGCGGCAAGGTGAAGATCCGGTTAGAAAACCAGGCGTCAATAAAGGAGTGTAAAGACCCGAGCGTCTCTGGACATGCTGAGAACTATGCTCGTGTAGCGTTTGATGTCGCTGTGGCTCTGGTGTGCATGCTGTCACTGCTGCTGTGTGGACGCTCCATACTGCGAGGCATCATGCTGCAACAGGAGTTTGTGCAGTTCTTTAGGGAGACTCTGGATCGTAAAGTGTGCTGGGCAGACCGGTTGGAGTTCATTAACGGATGGTATATCCTCCTTATCATCAGCGACATCCTCACCATCACTGGCAGCTTCATCAAAATCGGCATTGAGTCTAAGAATATGTCCTCATACGACTTATGCGGCATCCTGTTGGGAACCTCCACACTCTTGGTGTGGGTCGGAGTAATTCGCTATCTCACATTCTTCCAGAAGTACAATATCCTGATCGTGACACTTCGAGCAGCGTTTCCCAATGTGATTCGGTTCTGCTGCTGCGTGGCCGTCATCTATCTGGGCTACTGCTTCTGTGGCTGGATCGTCCTGGGACCATACCACGTCAAGTTCCGTTCTCTGTCCATGGTGTCCGAGTGCCTGTTTTCTCTCATCAACGGGGACGACATGTTTGTGACGTTCGCGGGGATGCAGGAGAGCAGCACTCTGGTGTGGCTGTTTAGCCAGGTTTACCTGTACACCTTCATCTCCCTCTTCATCTACATGGTGCTGTCGCTGTTTATTGCGCTCATCACAGGAGCCTACGAGACCATCAAGCACCAAACCCAAGAACCAATGCACATCACAGACCTGCATGCCTTCATAGCAGAGTGTACAGACGCACCTAACTCTGGGAAGTTCAGAGGTGTGGAGACCTCGCCGTGCTCCTTCTTCTGCTGCTGTGACAGAACAACGACATATGAGGACGTCCTGCTGGTGAACTGAGGTTGACCTCAGTGACCTCAAAAGCCTCACCATCCTCCCCTGCTGACCACAGGGATACACTGCACTCCTGACGCCCAGTGTCTCTGTACCAGCATGCTGTATCTGGGTCAAACCTCGTTACTCATTTGAGGGAGGAGACACCATCAGCTGGACCAGCACTCTGTTGAAGGAATGTCTAACAGCAGTCTTCTTGTTGGACCTCTTATCTTGTCTGTCTATGAAGAAGAAACTGAGGGCTGATGCAGAAATTGGCCTGTCCTCTGTATGGACAGGACATAAGCATCCTGAATGACTAATGCACAGACGCTTCTCTGTTCCTtggtttttaaaagaaaacagtaTCTTTTCCAATGTATTTAAAGGTGAAGTATGTAATACTGtgtaaaatagttactgcagtacaaattcaaaatactggagagagtcgtctcccccgccttctcctccccagactcgaagttgacggaggttgccaggctgagac

Function

symbol description
mcoln1 Enables identical protein binding activity and ligand-gated calcium channel activity. Involved in calcium ion transmembrane transport; phagosome maturation; and protein homotetramerization. Located in several cellular components, including Golgi apparatus; late endosome; and lysosome. Is integral component of membrane. Part of receptor complex. Implicated in glycoproteinosis and mucolipidosis type IV.

NR:

description
PREDICTED: mucolipin-1

GO: NA

KEGG:

id description
K04992 MCOLN1, TRPML1; mucolipin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796054.1 True 2411 mRNA 0.50 14 22216256 22238860
XM_039796063.1 False 2402 mRNA 0.50 14 22216256 22238860

Neighbor

gene id symbol gene type direction distance location
si:ch211-214c7.4 LOC107102761 coding downstream 6526 22182683 ~ 22209730 (-)
pkn1a pkn1,LOC103364445,LOC108242730,LOC107382353,LOC103383564 coding downstream 44582 22115116 ~ 22171674 (-)
map2k7 map2k7 coding downstream 104449 22095960 ~ 22111807 (-)
LOC120565705 NA coding downstream 130784 22053010 ~ 22085472 (-)
slc25a38b LOC103364442,LOC107382263,LOC108242715,LOC106515296,LOC105939773,LOC103153186,LOC101165446,LOC106917329 coding downstream 164718 22041725 ~ 22051538 (-)
LOC120556520 NA coding upstream 27558 22266418 ~ 22273082 (-)
evi5l evi5l,LOC100697259 coding upstream 36806 22275666 ~ 22320547 (-)
LOC120562917 LOC103354903 coding upstream 173740 22412600 ~ 22538510 (-)
LOC120558725 LOC103354901,LOC103383579 coding upstream 380810 22619670 ~ 22634940 (-)
si:dkey-45d16.4 LOC104950130 coding upstream 397024 22635884 ~ 22641744 (-)
G6731 NA non-coding downstream 124699 22090500 ~ 22091557 (-)
LOC120568056 NA non-coding downstream 175325 22035285 ~ 22040931 (-)
LOC120569580 NA non-coding downstream 177105 22039009 ~ 22039151 (-)
G6654 NA non-coding downstream 239108 21968847 ~ 21977148 (-)
G6653 NA non-coding downstream 240015 21968004 ~ 21976241 (-)
G6764 NA non-coding upstream 25524 22264384 ~ 22265992 (-)
G6762 ddx39a,LOC103150096 non-coding upstream 85690 22324550 ~ 22325383 (-)
LOC120562974 NA non-coding upstream 362528 22601388 ~ 22603953 (-)
G6834 NA non-coding upstream 412672 22651532 ~ 22653786 (-)
G6879 NA non-coding upstream 685971 22924831 ~ 22933891 (-)
G6592 ube2o,LOC106534564 other downstream 506444 21708540 ~ 21709812 (-)
LOC120566957 NA other downstream 647197 21563091 ~ 21569059 (-)
LOC120574674 NA other downstream 2022918 20187281 ~ 20193338 (-)
spink4 NA other downstream 2171530 20042763 ~ 20044726 (-)
micu3a micu3,LOC100706756,LOC102779354,LOC101479276 other downstream 2419734 19766497 ~ 19796522 (-)
LOC120556502 LOC104944681,LOC103364456 other upstream 89659 22328519 ~ 22335583 (-)
LOC120565362 pik3r6 other upstream 426515 22665375 ~ 22692333 (-)
G6881 usp43,LOC104947996 other upstream 743065 22981925 ~ 22988500 (-)
G6924 NA other upstream 849640 23088500 ~ 23164937 (-)
G6943 NA other upstream 974996 23213856 ~ 23242290 (-)

Expression


Co-expression Network