LOC120556938 (LOC104960150)


Basic Information

Item Value
gene id LOC120556938
gene name LOC104960150
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 20114806 ~ 20126605 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796872.1
atGGAAGAGAAGGGCAGGGAGCAGGAGAAGGATGCTGAGAGGAAATGTGAGCAGGAGCAAGAGGAAGgaacagagaagaagagaaaatgTGGGTTGTCTGAGCACAGCACCCAGCCAACCACAAACAGCTCACAGCATGACAATAACATTTGTGCTCCAAAAGTAGATATCATGTTTATGAAGACCCATAAAACTGCCAGCAGCACCTTCCTGAACATACTGTTCCGCTTTGGAGAGAAGCACAAACTCAAATTTGCCTTCCCTAACAGCCGGAACGACTTCTTCTACCCCTCACCTTTTCAGCACACGTACGTTCAAGGCTACAAATCCGGAATGTGTTTTAACATTATGTGTAACCACATGCGATTCAATGCACCTGAGGTGGCCAAAGTGCTGCCAAGAGACACTTTCTACAGTACAATATTGCGAGATCCGGCAGGGCTCTTTGAGTCATCCTTTCATTACTATGGTCATGTTGTTCCTCTGACCTGGAGCATACCAGGGGAGGATAAGATGGCTGAGTTCCTGCGTGATCCTAAACAATACTTCAGCCCAGATGGATTTAACTCCTTCCTGAAGAACAAGATGTTCTTTGACTTTGGGCAGGACAACACTCTGGATACCGACGACCCACGTGTAGAGGGGAGCATCATGGTTATCGCTGAGCGTTTTCACTTAGTTATGCTAATGGAGCACTCTGAGGAATCGCTCATCCTGCTTAAGGATGCTCTCTGTTGGGAGATGGATGATCTTGTCTTCTTCAGGCTCAACTCCCGTAAGGAATCCACTGTGCCTAAACTGACTCCTGAGCTTAGGGCAAAGGCCCTGCAGTGGAATAACATTGACTGGAAGCTTTACAAACATTTTAACCTGACCTTCTGGAAGAAAGTGGAGGCTTATGGAAGAAAGCGTATGGCAGACGACGTCGCAGAGCTCAGGAGGAGGAACGCAGAATTGGTAGAGATCTGCATTGAGGGAGTTCACTCTGTCGAGGCTGGAAGTATTCATGAGGCGGCCATGCAGCTGTGGCAGCCCATCGGAGAGAAGTCAAGCGTAGGATACaatttgaaagaaaatgtagACAAAGCCTATGAGGAGTTGTGCCGAAAGATGTTAACCCCAGAAATACAATATTTGACAGACTTGGGGGTTAACCTGTGGGTCACTAAGCTGTGGGGACATGTGAGGAATATAATTAACTGGTGATGAGATGCATGAGAG

Function

NR:

description
PREDICTED: galactosylceramide sulfotransferase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796872.1 True 1221 mRNA 0.47 3 20114806 20126605

Neighbor

gene id symbol gene type direction distance location
LOC120565191 LOC103366463,LOC102211221,LOC102302105,LOC101484083 coding downstream 26167 20044965 ~ 20088639 (-)
stra6l LOC104958947 coding downstream 72722 20033839 ~ 20042084 (-)
tdrd7a NA coding downstream 81968 20011154 ~ 20032838 (-)
tmod1 tmod1 coding downstream 108145 19985410 ~ 20006661 (-)
gne gne,LOC102781855 coding downstream 182398 19902680 ~ 19932408 (-)
LOC120564208 NA coding upstream 56294 20182899 ~ 20186395 (-)
LOC120556991 NA coding upstream 71416 20198021 ~ 20199878 (-)
LOC120565775 sgcz coding upstream 87112 20213717 ~ 20621798 (-)
tppp2 LOC103374906,LOC101485391,LOC102784423 coding upstream 695892 20822497 ~ 20827923 (-)
LOC120571719 NA coding upstream 715476 20842081 ~ 20845093 (-)
G6242 NA non-coding downstream 194526 19917116 ~ 19920280 (-)
G6233 NA non-coding downstream 273091 19839154 ~ 19841715 (-)
G6131 NA non-coding downstream 362988 19751601 ~ 19751818 (-)
G6093 NA non-coding downstream 565648 19548778 ~ 19549158 (-)
G6086 NA non-coding downstream 618678 19493882 ~ 19496128 (-)
G6264 NA non-coding upstream 55434 20182039 ~ 20182294 (-)
G6269 NA non-coding upstream 69673 20196278 ~ 20203695 (-)
G6297 NA non-coding upstream 618543 20745148 ~ 20745353 (-)
G6387 psmd12 non-coding upstream 853580 20980185 ~ 20983277 (-)
G6410 NA non-coding upstream 1006905 21133510 ~ 21135891 (-)
spink4 NA other downstream 70080 20042763 ~ 20044726 (-)
micu3a micu3,LOC100706756,LOC102779354,LOC101479276 other downstream 318284 19766497 ~ 19796522 (-)
LOC120569510 NA other downstream 349419 19764893 ~ 19765387 (-)
G6084 NA other downstream 568879 19489588 ~ 19545927 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other downstream 1077725 19023216 ~ 19037081 (-)
LOC120574674 NA other upstream 60676 20187281 ~ 20193338 (-)
LOC120566957 NA other upstream 1436486 21563091 ~ 21569059 (-)
G6592 ube2o,LOC106534564 other upstream 1581935 21708540 ~ 21709812 (-)
LOC120556502 LOC104944681,LOC103364456 other upstream 2201914 22328519 ~ 22335583 (-)
LOC120565362 pik3r6 other upstream 2538770 22665375 ~ 22692333 (-)

Expression


Co-expression Network