pdcd4a (LOC104951176,LOC103361051)


Basic Information

Item Value
gene id pdcd4a
gene name LOC104951176,LOC103361051
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 29480195 ~ 29497663 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797508.1
GACTTTACTCAGCTTACACTTGCAAAGTTAAAAACAGAGTGTTTATCAGGTTGTTTGCTGAAATACTCTGCGACTAACCTAGCTTCCCTCCGCGTTGTTATTTTACTCTTCCCATCCGTAACCCCTTATTATTCCCCTCACTGGTTCTTCGAGCTCTTTGTAATTCAGTTAAATTATTTGTTTGGTGTTTTCTGCAGTTGATACCGTGCAGCACAACAAAGGTTTATCCCTACCAGCACGTAGCATTTGTCGAAAGACTGCTACACTAAATATCTTGTTCTGCAGACGTTTGGcttgctatttttttttgtttttgtttttttgggggggggggtatttgtTGCAGCTGAAGCTTGACAGGAGGAGCTCACCGTAAGGATTTTTAATCGAGCATTTGGAGAGCGCCATGGCGACCGAAGTGGATACGTGGTCCTTGGCTCCAAAAGCTGACGGTCTGTGCTGTGAGGAGTGCAGATTTAGAGCCCCACCTGTGAGAGCATTTCCAAACTCCTTGGGGGTGTTCTCTTTCGACGACAACCTGGCAGATGCTAACCATCCCTACACCGTTGACGATGACTTGCTGAACGAGGCGGAGGTGAACGGTAACTGGACGCCTCAGGAGAAAGCACTCCACGAGGCACGACTCAAAGCCAAAGCCAAGCGTCGCCTGCGCAAGTCCTCCTCCCGCAACTCCACCAGCGAGTCTTTCTCTGAGTCAGGAGAATTGTCTGGAAGTGACCCACACAGCCCAAAGGGCAAAGTCAACACCAGTGACCGCAAATCCAGGACGGGCAAAGGCAGAGGCCTGCCAAAAAAAGGTGGGGCAGGTGGTAAAGGAGTTTGGGGGGCTGCTGGGATGGTTTATGAAGATGAGGAACCTGATATGCGGGACCCTAACTACGATGAGTCTGCTCAGGGGGACACAGTTTATGCAACAGTTGTGCCAGAGGTAGATGAGAAGGAACTGGAAAAAATGGTCAACCCAATTGTACAGGAGTACTTTGAACATGGAGACACAAAAGAGGTCCAGATGTTGCTGAAGGGGCTCAACCTGGGCCAACATAAGTACGAGTTCTCCTCCCTGGCTGTGTCCCTGTCTCTCGAAGGCAAGGCCAGCCACAGAGAGCTGACCTCCCGCCTGCTGTCTGATCTGTCGGGCAAGATGCTGTCACAAAGTGAAATGGCACGTGCCTTCGACAAGATACTGAAAGAGCTGCCAGACCTCATACTGGACACACCGGAGGCTCCACAGATGTTAGGCCAGTTTATAGCCAGAGCCATAGCGGACCACGTCCTCCCAATGTCATTCCTGGACTTTTACAAGGGCAAAGTGGACTGTGATCATGCCAGagtGGCTTTAGACCGTGCCGAAGTGCTGCTGAACATGAAGAGGGAGATGGTTCGTCTAGATAATGTGTGGGGTGTGGGTGGAGGCCTGAGACCTGTCAAACATCTCGTCAAAGAGATGAACCTCCTGCTCAAGGAGTACCTGATATCAGGAGACGTGTCGGAGGCAGAGCACTGTCTGCGGGACCTGGAAGTCCCACACTTCCACCATGAGCTGGTCTATGAGGCTGTAGTGATGGTGCTGGAGTCAAAAGGAGACACTGCTAGTCATATGATGATAAAGCTGCTGCAGTCCTTCTGGAAAACAGGCCTCATCACTGTGGATCAGATGAACCGGGGTTTCCAGCGTGTCTATGACGAGCTCCCAGAAATCAACCTTGACGTGCCACACGCCCATTCTATCATGGAGACCTTTGTGGACCTCTGCTACCAAGAGTCTGTCATCACCAAACAGCTGAGGGATGCCTGTCCAGCCAGAGGACGGAAGCGTTTTGTAAGTGAAGGAGATGGAGGAGCGATCAAGAACTAATCCACAGGAGGAAGAGCAGATTAGGAGGCGGAGGAGGGGTGTCTACAGGTTCTTACCCCCGGTTTCCGCTCCAGCATGTTTTCCCCTGGATACGGCATGCTGGCAGTCTAAAGTTTCCTCGTTCCTCTCCTGATAATGTTTTCATTACACAAACCAGCATTGAAGTTCGGTGAAAGTAGACTGAAGAGTCGCCCAGGCGTTCAGTTCTAAACATCTTGTTGTTTGCtgttttagacatttttttgtaaaaaaaaaaactttatttctgGGGTTGATGTGCCCCTCTTGGCTCAGTCTTTGTACCTGTTTCTCAAGAATAATTTGAGTCAAAGCTGCATAAAGACATGCTGGACAGGCTGGGGTGTGTGGGAGATGAACTTGATGGTTTGTCTCTTGCTTTGCTTCAGCTGTTGCCATGTCTCCATTTTctccatgtaaagcgctataaatgaaaatagcacTTGAAAGACATACAGGATACTGTTGAGTAAGCACTTAGGTTTAGATCCTTGTTGAGCTAAATTACTTTCTATTTTCAGCCACAAATTATTTCAGGGACAACAAGCTTTGTACCATCGGGTTCAAGTGGTTATATTGATCCTTAATGAACAGAGTTTATTGTtcgtattttttatttttttgcatcttGGTCTCTGAGgccaaatgtttattttataaagCAAAGCAGTCGAagcaagatgtttttttttttttttttgcactattTGGGTGGTTATTTGAAACTTGCATTAGGGCATATATACTTTGGAAGcccttttctgaaaaaaaaaaaataataaataaattggggaaaaaaaatgagaatGCAATCTTTTGAGCACTATGCTTGCAATTAATGAATATACAGCTCACATGGCCAGAAATGGATTTTGGACAGGTAACCTTAAGCCAGACCTTCTGTAGAGAGCAGAAGTAATCTGGAAATTGTCTTAAACTTGTTTAACCGTCTAATATGTCtgtgaaatggccaccacagcTTTTCTTGGAAGACTATATGTTAAGTATATACATATTCTTTTCTGCCACTGTCTGTAACAGTTTTTCATGTTGACGGAAGTAAAAGATGTGGCTGAGAAATATATTTCGTTcattaaaaagcaacaaaatgaaGTGTCTGTATTCCTTTTTTTGTCATGCCAGCAGTATTGATGAAAGAATAACTAGCAGTAAGTGATTGGGCAAGTGTGGTGGATATGTACATCAATCACATTTGTTGATCAGTCATCAGTTGTGATGCTTAATGTATATTTCAACCATGTCTTTAACATGTACCTGTCTCATTTCCCATCTTTCTCTATGACCTATGGTCAACTTAAACCTGTAACCAAAAAAGTGGTTTGAGGCCAAagcttgacttttttttttctctgactcTTGACCTCATTTATGGTACATTACTGGCTATGTGTCATAGCAGAGCTTTATTATGCTTACTGTGTAAATAAAGGGTTGAGGGTAATAATGTTGGTTCAAATTTAGAAACATGTAATTCAAAGGATGTTCTCATTCATGCATGCAGCTGTACACTGTCAAGAGGCTATGCTTGTATTCCTACAGTTATGTTTGTACTATGGATTTATTTTGGATCAGCTGCTCACTAAACCCTCCCTTACTCAAGTAAAtcattttatacatttaaataaaattacatatttCCCTCAA
>XM_039797517.1
ACTTTACTCAGCTTACACTTGCAAAGTTAAAAACAGAGTGTTTATCAGGTTGTTTGCTGAAATACTCTGCGACTAACCTAGCTTCCCTCCGCGTTGTTATTTTACTCTTCCCATCCGTAACCCCTTATTATTCCCCTCACTGGTTCTTCGAGCTCTTTGTAATTCAGTTAAATTATTTGTTTGGTGTTTTCTGCAGTTGATACCGTGCAGCACAACAAAGGTTTATCCCTACCAGCACGTAGCATTTGTCGAAAGACTGCTACACTAAATATCTTGTTCTGCAGACGTTTGGcttgctatttttttttgtttttgtttttttgggggggggggtatttgtTGCAGCTGAAGCTTGACAGGAGGAGCTCACCGTAAGGATTTTTAATCGAGCATTTGGAGAGCGCCATGGCGACCGAAGTGGATACGTGGTCCTTGGCTCCAAAAGCTGACGGGGTGTTCTCTTTCGACGACAACCTGGCAGATGCTAACCATCCCTACACCGTTGACGATGACTTGCTGAACGAGGCGGAGGTGAACGGTAACTGGACGCCTCAGGAGAAAGCACTCCACGAGGCACGACTCAAAGCCAAAGCCAAGCGTCGCCTGCGCAAGTCCTCCTCCCGCAACTCCACCAGCGAGTCTTTCTCTGAGTCAGGAGAATTGTCTGGAAGTGACCCACACAGCCCAAAGGGCAAAGTCAACACCAGTGACCGCAAATCCAGGACGGGCAAAGGCAGAGGCCTGCCAAAAAAAGGTGGGGCAGGTGGTAAAGGAGTTTGGGGGGCTGCTGGGATGGTTTATGAAGATGAGGAACCTGATATGCGGGACCCTAACTACGATGAGTCTGCTCAGGGGGACACAGTTTATGCAACAGTTGTGCCAGAGGTAGATGAGAAGGAACTGGAAAAAATGGTCAACCCAATTGTACAGGAGTACTTTGAACATGGAGACACAAAAGAGGTCCAGATGTTGCTGAAGGGGCTCAACCTGGGCCAACATAAGTACGAGTTCTCCTCCCTGGCTGTGTCCCTGTCTCTCGAAGGCAAGGCCAGCCACAGAGAGCTGACCTCCCGCCTGCTGTCTGATCTGTCGGGCAAGATGCTGTCACAAAGTGAAATGGCACGTGCCTTCGACAAGATACTGAAAGAGCTGCCAGACCTCATACTGGACACACCGGAGGCTCCACAGATGTTAGGCCAGTTTATAGCCAGAGCCATAGCGGACCACGTCCTCCCAATGTCATTCCTGGACTTTTACAAGGGCAAAGTGGACTGTGATCATGCCAGagtGGCTTTAGACCGTGCCGAAGTGCTGCTGAACATGAAGAGGGAGATGGTTCGTCTAGATAATGTGTGGGGTGTGGGTGGAGGCCTGAGACCTGTCAAACATCTCGTCAAAGAGATGAACCTCCTGCTCAAGGAGTACCTGATATCAGGAGACGTGTCGGAGGCAGAGCACTGTCTGCGGGACCTGGAAGTCCCACACTTCCACCATGAGCTGGTCTATGAGGCTGTAGTGATGGTGCTGGAGTCAAAAGGAGACACTGCTAGTCATATGATGATAAAGCTGCTGCAGTCCTTCTGGAAAACAGGCCTCATCACTGTGGATCAGATGAACCGGGGTTTCCAGCGTGTCTATGACGAGCTCCCAGAAATCAACCTTGACGTGCCACACGCCCATTCTATCATGGAGACCTTTGTGGACCTCTGCTACCAAGAGTCTGTCATCACCAAACAGCTGAGGGATGCCTGTCCAGCCAGAGGACGGAAGCGTTTTGTAAGTGAAGGAGATGGAGGAGCGATCAAGAACTAATCCACAGGAGGAAGAGCAGATTAGGAGGCGGAGGAGGGGTGTCTACAGGTTCTTACCCCCGGTTTCCGCTCCAGCATGTTTTCCCCTGGATACGGCATGCTGGCAGTCTAAAGTTTCCTCGTTCCTCTCCTGATAATGTTTTCATTACACAAACCAGCATTGAAGTTCGGTGAAAGTAGACTGAAGAGTCGCCCAGGCGTTCAGTTCTAAACATCTTGTTGTTTGCtgttttagacatttttttgtaaaaaaaaaaactttatttctgGGGTTGATGTGCCCCTCTTGGCTCAGTCTTTGTACCTGTTTCTCAAGAATAATTTGAGTCAAAGCTGCATAAAGACATGCTGGACAGGCTGGGGTGTGTGGGAGATGAACTTGATGGTTTGTCTCTTGCTTTGCTTCAGCTGTTGCCATGTCTCCATTTTctccatgtaaagcgctataaatgaaaatagcacTTGAAAGACATACAGGATACTGTTGAGTAAGCACTTAGGTTTAGATCCTTGTTGAGCTAAATTACTTTCTATTTTCAGCCACAAATTATTTCAGGGACAACAAGCTTTGTACCATCGGGTTCAAGTGGTTATATTGATCCTTAATGAACAGAGTTTATTGTtcgtattttttatttttttgcatcttGGTCTCTGAGgccaaatgtttattttataaagCAAAGCAGTCGAagcaagatgtttttttttttttttttgcactattTGGGTGGTTATTTGAAACTTGCATTAGGGCATATATACTTTGGAAGcccttttctgaaaaaaaaaaaataataaataaattggggaaaaaaaatgagaatGCAATCTTTTGAGCACTATGCTTGCAATTAATGAATATACAGCTCACATGGCCAGAAATGGATTTTGGACAGGTAACCTTAAGCCAGACCTTCTGTAGAGAGCAGAAGTAATCTGGAAATTGTCTTAAACTTGTTTAACCGTCTAATATGTCtgtgaaatggccaccacagcTTTTCTTGGAAGACTATATGTTAAGTATATACATATTCTTTTCTGCCACTGTCTGTAACAGTTTTTCATGTTGACGGAAGTAAAAGATGTGGCTGAGAAATATATTTCGTTcattaaaaagcaacaaaatgaaGTGTCTGTATTCCTTTTTTTGTCATGCCAGCAGTATTGATGAAAGAATAACTAGCAGTAAGTGATTGGGCAAGTGTGGTGGATATGTACATCAATCACATTTGTTGATCAGTCATCAGTTGTGATGCTTAATGTATATTTCAACCATGTCTTTAACATGTACCTGTCTCATTTCCCATCTTTCTCTATGACCTATGGTCAACTTAAACCTGTAACCAAAAAAGTGGTTTGAGGCCAAagcttgacttttttttttctctgactcTTGACCTCATTTATGGTACATTACTGGCTATGTGTCATAGCAGAGCTTTATTATGCTTACTGTGTAAATAAAGGGTTGAGGGTAATAATGTTGGTTCAAATTTAGAAACATGTAATTCAAAGGATGTTCTCATTCATGCATGCAGCTGTACACTGTCAAGAGGCTATGCTTGTATTCCTACAGTTATGTTTGTACTATGGATTTATTTTGGATCAGCTGCTCACTAAACCCTCCCTTACTCAAGTAAAtcattttatacatttaaataaaattacatatttCCCTCAA

Function

NR:

description
PREDICTED: programmed cell death protein 4-like

GO: NA

KEGG:

id description
K16865 PDCD4; programmed cell death protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797508.1 True 3559 mRNA 0.44 12 29480195 29497663
XM_039797517.1 False 3495 mRNA 0.44 11 29480195 29497662

Neighbor

gene id symbol gene type direction distance location
mogs mogs coding downstream 436 29470993 ~ 29479759 (-)
LOC120572938 LOC103361029,LOC102212686,LOC102777346,LOC100696909 coding downstream 22092 29454310 ~ 29458103 (-)
fbxo41 fbxo41 coding downstream 42713 29382579 ~ 29437482 (-)
glb1 glb1,LOC106949603 coding downstream 239843 29231428 ~ 29240352 (-)
cldnd1b cldnd1,cldnd,LOC103360955 coding downstream 249354 29222264 ~ 29230841 (-)
LOC120564966 wbp1,LOC106535359 coding upstream 3005 29500668 ~ 29514170 (-)
LOC120557425 LOC102294808,LOC101473017,LOC107091121,LOC100696115,LOC102214471,LOC106949618,LOC103466417 coding upstream 71607 29569270 ~ 29585071 (-)
cdkn2a/b NA coding upstream 111487 29609150 ~ 29611737 (-)
cxxc4 cxxc4 coding upstream 210707 29708370 ~ 29738207 (-)
ppa2 LOC103361132 coding upstream 297118 29794781 ~ 29803619 (-)
G8610 smox non-coding downstream 108856 29370601 ~ 29371339 (-)
G8609 smox non-coding downstream 113714 29364466 ~ 29366481 (-)
G8584 NA non-coding downstream 189382 29290300 ~ 29290813 (-)
G8582 NA non-coding downstream 197151 29282832 ~ 29283044 (-)
G8575 NA non-coding downstream 238357 29241612 ~ 29241838 (-)
G8694 NA non-coding upstream 67205 29564868 ~ 29568981 (-)
G8704 NA non-coding upstream 117462 29615125 ~ 29615400 (-)
G8707 NA non-coding upstream 122356 29620019 ~ 29620484 (-)
G8790 NA non-coding upstream 508731 30006394 ~ 30007983 (-)
G8834 hadh,LOC103384097 non-coding upstream 773801 30271464 ~ 30273350 (-)
rnf24 rnf24,LOC102778784 other downstream 140348 29306021 ~ 29339847 (-)
lonrf1l lonrf1,LOC103360493,LOC102797331 other downstream 2185284 27281798 ~ 27294911 (-)
smim14 smim14 other downstream 2901380 26567067 ~ 26578815 (-)
LOC120566984 NA other downstream 2944459 26533833 ~ 26535736 (-)
adamtsl7 NA other downstream 3358546 26112014 ~ 26121649 (-)
G8701 NA other upstream 91645 29589308 ~ 29593623 (-)
bnc2 bnc2 other upstream 1078209 30575872 ~ 30744878 (-)
G8975 NA other upstream 1473725 30971388 ~ 30974612 (-)
znf827 znf827,LOC102789810 other upstream 2436974 31934637 ~ 32006542 (-)
LOC120567365 NA other upstream 2724294 32221957 ~ 32226423 (-)

Expression


Co-expression Network