papss1 (papss1)


Basic Information

Item Value
gene id papss1
gene name papss1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 30206501 ~ 30251628 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799495.1
TCACTACGTCGCCGGTAAGCGGTGACGTGGCTGCTGGGGAAGCTCTTCCCGGTTGTTGTGCCAAGCTCCTCCGGGCTCCTCCATTCACTGGAGATACCtgtgccacaaaaaaaaaaaaaaaaactaacctgTGCAAACTAACAGCCGAGCAGTTTGtcgttttgtgtgttgtttaaagAGGTAGCTGGTTGAATTAGCCGCTGACTGCTGCCAGCCATGGAGACGTATGGCAACTCGCACAAGAAACAGAAGATAGGCAACGCTGCCGCGAACTGGGGAATGCAACGTGCAACTAATGTCACCTATCAAGCTCATCATGTCAGCCGAAACAAGCGTGGGCAGGTTGTGGGCACAAGAGGAGGGTTCAGAGGATGCACCGTTTGGCTGAGTGGTTTGTCTGGTGCAGGGAAGACTACAGTTAGCATGGCTCTGGAGGAGTATCTGGTGTGTCATGGTATCCcctgttacacactggatgggGACAATATCCGTCAGGGGCTGAACAAAAACCTAGGCTTCAGCCCAGAGGACCGTGAAGAGAACATAAGACGCATTGCTGAGGTGGCCCGGCTTTTTGCTGATGCTGGGCTGGTCTGCATCGCCAGCTTCATCTCTCCCTACAGCAGGGATCGCCTCAATGCCAGGAAGATCCATGAGGCAGCAGGGCTGCCTTTCTTTGAAGTGTTTGTGGACGCTCCACTGGATGTCTGTGAGCAGAGGGACGTGAAGGGGCTGTACAAGAGAGCCAGAGCGGGGGAGATAAGAGgttTCACTGGAATTGACTCCGAGTACGAGAAGCCAGAGGCCCCAGAGCTGGTGCTAAAGACCGACTCCTGCAGTGTGAATGAGTGCATACAGCAGCTCATTGACCTGCTTCAAGAGAGGGATATAGTTCCTGTTGATGCGTCTTATGAAGTGAAAGAGCTGTACGTTCAGGAGAATAAACTGGACCTGGCTAAGGCTGATGCAGAGACTCTGCCTGCTGTACAGATTGGAAAGGTGGACATGCAGTGGGTGCAGGTGCTGGCTGAAGGCTGGGCCACTCCTCTGAATGGctttatgagagagagagagtatttGCAGTGTCTTCATTTTGACTGCCTGCTGGATGGTGGCGTCATCAACCTGTCCGTGCCTGTGGTGCTGCCGGTCTCTACTGCAGATAAAGAGCGTTTAGATGGCGTGACAGCTATGGCCTTGGTCTACGAGGGCAGACGAGTGGCCATCCTTCGCAACCCCGAGTTTTATGAACACCGCAAAGAAGAGCGATGTGCTCGCCAGTGGGGCACCACCTGCAAAGACCACCCTACATCAAGGTGTTATATTTGGATGCTGAGTCTTACTCAGCCTCCACCAAATGCGTTTGAGATCATGGTGATGGAAAGTGGGGACTGGCTGGTTGGGGGAGACCTGCAGGTTCTGGACAGGATCTACTGGAACGACGAACTCGATCAGTACCGACTGACACCCACTGAGCTCAAACagaagtttaaagaaatgaatgcAGATGCTGTATTTGCCTTTCAGCTTCGCAACCCAGTCCACAACGGCCATGCTCTTCTGATGCAGGATACCCACAAGCGCCTCATCGAGCGAGGCTACCGCCGGCCTGTTCTGCTGCTCCACCCACTGGGAGGTTGGACCAAGGACGATGATGTGCCGCTGCCCTGGCGAATGAAGCAGCATGCCGCTGTGCTGGAGGAGGGCGTCCTGAATCCAGACTCTACCATCGTGGCTATTTTTCCTTCACCCATGATGTATGCTGGGCCAACTGAGGTTCAGTGGCATTGCAGAGCTCGAATGGTGGCTGGAGCCAATTTCTACATTGTGGGCCGTGACCCTGCAGGCATGCCCCACCCTGACACAGGAAAGGACCTGTACGAGCCCACTCATGGCGCCAAGGTCCTCACCATGGCTCCAGGCCTCATCACTCTGGAGATTGTACCCTTTAAGGTCGCCGCTTACAACAAGGTCAAAAAAGCAATGGACTTTTATGACCCCAAAAATCATCAAGATTACGATTTCATCTCAGGCACACGTATGCGTAAGATGGCTCGCGAGGGAGAAAATCCTCCTGGCGGCTTCATGGCCCCGAAGGCTTGGGCTGTGCTGAAGGAATACTATAAGTCACTGGAGAAGGCTTAAAGGCAGAGCCTCAGATGAAACAAACCTAGAAAACACAGTGATGTTTAACAGGATTAATGTGGGGACCACTCATCTACTGTCAAAAACCACGCTCTGGCTTCTGTCTGTGTCACTTTCACACTCAAGTCTTTTAaatgtatgtactttatttaacTAAACTCACTCTGATTGTGAAATAAAGTAGGTGAGGTCAGTATACTAATGAATTGTTTTTTCAAgagaacaaacaaaaactttctttaaaatagatgtttgtgtttctcactAACTTTATAACCGTATATTCTGATGATCGGTTACAAAAGTGTTAAAAATTCAAAGATCAAGACTCGTAATGACCTGTATGGAAAGTACTGTTGACCAGTACTTTAATTGGTGGGGTTGAGTGTTGAGTAATCATGATGTCCAAATTAAAAACTGCACTTGCTAGAGTTTACTAAACTCACTACTGAAAACCACAAAGTTactttgtactgtatgtttgcaaGTGGCAAAATGTGGTGTATTTGATGTGAAAGGCGAGTGCCTTGGTCTTCAGAAATTGAATTCACAAGTCTTGTTTGaattaggacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatattaaaggagacctattatacttttctatattttctttCGTATCTATAATGTTACAGTGCTGGGATGTTCACATTAAACGTGGCCAAAGCGGAGGTAAACCTATTTTAAAAGAAATCCCTTTGAGCCAAAATCTCTGATTTCACACTGTTCTGAACActggtttcaacagttttttctactgtTTGTGCAGTGTTTACATTACATGCACTGCTACATGCTAACTTCAGGGAAACCTGTAATCTTAGTTGTAGATATTATTTTCTCCCCAATTTTGGACCACATTACTGCTCGAACATGTCCAGTTGCGTAgtttttggtttagaagcccTTATATGTGATTTTTGATGGTATAAATTGCTGCTATACTCAGTTAACTGCTAactacatgtagctacatgctaacgccagggaaagctgtaatcttggctgccGATGTTAAATCCTCCCTAATATTAGATCACAAGTCTAGTTGTGTAGTATTTGTCTTAGAAGCCtttgtttgtgatttttcacagtataaagtcctgctatatactaCAGAGACAGCGAGAGCAGAACACAGATGCAGAAACCccgaaacgctgaccaatccgagcagactgggctttttcggtaGGGggacttaaagagacaggcgctccaacAGAGCGTCTTAGACAGAGGGTGAAAACAGGTGCAGCAGCATGAGGAAAAATAGtgtgaacattaaagcatttaaatatGTTCTTGTAGAAACTAAACATACACTTATGACCCTGAAAACAGAAtataataggtctcctttaaaaatatttttaatgggATATGCAACCCTAACCTTTCTAAACCAACCTTCCTAAACTCCCTAAAAAAACTTTTGTCATATTTAGTCTATTTATTCTGTCCTAACATTACAACGTTCTATTTTTAACTGTGTTGTGCATGTAGTTTTGGTGTTTTAAACTTGTCTCTCAACAGTCCTgatattttgttacattttcatttgtatttttttctgccaTGGGTTGCTAATATTTTCCATGTGCTAATTCATTTTTAAGAGTTGGTCTGTATAATCAGATGGTTGATGGTTACCATTAAGGGATCAGATTTGTAATCTTCCTTGTTCAATAAACCATTTTTAGCAAAAGAA

Function

symbol description
papss1 Predicted to enable adenylylsulfate kinase activity. Predicted to be involved in 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process and sulfate assimilation. Orthologous to human PAPSS1 (3'-phosphoadenosine 5'-phosphosulfate synthase 1).

NR:

description
PREDICTED: bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1

GO:

id name namespace
GO:0000103 sulfate assimilation biological_process
GO:0016310 phosphorylation biological_process
GO:0004781 sulfate adenylyltransferase (ATP) activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004020 adenylylsulfate kinase activity molecular_function

KEGG:

id description
K13811 PAPSS; 3'-phosphoadenosine 5'-phosphosulfate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799495.1 True 3934 mRNA 0.46 13 30206501 30251628

Neighbor

gene id symbol gene type direction distance location
dkk2 dkk2 coding downstream 40306 30152144 ~ 30166195 (-)
tbck tbck coding downstream 105373 30043939 ~ 30101128 (-)
LOC120569234 LOC102312368,LOC100706304,LOC102797228,LOC101468181 coding downstream 162837 30028109 ~ 30043664 (-)
LOC120569156 LOC102312368,LOC100706304,LOC102797228,LOC101468181 coding downstream 232081 29962630 ~ 29974420 (-)
ints12 ints12 coding downstream 376486 29823819 ~ 29830015 (-)
lef1 lef1 coding upstream 26899 30278527 ~ 30320963 (-)
LOC120560609 casp6 coding upstream 149812 30401440 ~ 30407692 (-)
pla2g12a pla2g12a coding upstream 166867 30418495 ~ 30424022 (-)
dnajb14 dnajb14 coding upstream 172978 30424606 ~ 30439055 (-)
LOC120569182 ttc39b,LOC103361331,LOC103383857 coding upstream 188754 30440382 ~ 30447099 (-)
G8790 NA non-coding downstream 198518 30006394 ~ 30007983 (-)
G8707 NA non-coding downstream 586017 29620019 ~ 29620484 (-)
G8704 NA non-coding downstream 591101 29615125 ~ 29615400 (-)
G8694 NA non-coding downstream 637520 29564868 ~ 29568981 (-)
G8610 smox non-coding downstream 835162 29370601 ~ 29371339 (-)
G8834 hadh,LOC103384097 non-coding upstream 19836 30271464 ~ 30273350 (-)
G8843 NA non-coding upstream 102810 30354438 ~ 30354652 (-)
G8880 NA non-coding upstream 198703 30450331 ~ 30450686 (-)
G8890 NA non-coding upstream 447509 30699137 ~ 30699343 (-)
G8952 NA non-coding upstream 557743 30809371 ~ 30899158 (-)
G8701 NA other downstream 612878 29589308 ~ 29593623 (-)
rnf24 rnf24,LOC102778784 other downstream 866654 29306021 ~ 29339847 (-)
lonrf1l lonrf1,LOC103360493,LOC102797331 other downstream 2911590 27281798 ~ 27294911 (-)
smim14 smim14 other downstream 3627686 26567067 ~ 26578815 (-)
LOC120566984 NA other downstream 3670765 26533833 ~ 26535736 (-)
bnc2 bnc2 other upstream 324244 30575872 ~ 30744878 (-)
G8975 NA other upstream 719760 30971388 ~ 30974612 (-)
znf827 znf827,LOC102789810 other upstream 1683009 31934637 ~ 32006542 (-)
LOC120567365 NA other upstream 1970329 32221957 ~ 32226423 (-)
lrba NA other upstream 2333096 32584724 ~ 32781154 (-)

Expression


Co-expression Network