taf5 (taf5)


Basic Information

Item Value
gene id taf5
gene name taf5
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 16403910 ~ 16410013 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799762.1
atggcGGCCGTACAAGGTGGTCTGGCCGACACGAACGAagaaaaagacataaaaacagAACCATCAAACGATGGCTTTGGAAATAATAATGCAAACGACGGAAGAGTGCTCTCTACGTCCCCCGGCTCCAGTGCTTCGGCTGGAATTAATAAATCTGCGGCAGGAGCCCCGGAGGACCAGCAGACGCTGCTGGCAGTCCTGCAATTCCTCAGGAAGAACAAACTGACCGAGTCCGTCGAAATTTTGCGTCGTGAAGCGGGACTACCGGAGGATTCACTGGAACTGAAGGGGGGTGATTCCTCCGGTGCAGGCTCGGGGGGTGCTGCGGGCAGTGGGGACAAAGAAGGCGGGGATGCGAGCTCTCTTCTCAGCCGGGTCACCAGCTCATCCTCGGCTGTAGCTCAGGCGCCAACTAAAGCTGCTGGGGAGGATCAGCCAGATGTCAACGTGGTGCTGTCAGCTTACAACCAGCAGGGAGACCCTCCGCTGTACCAGGTTTACTACAGCGGCCTGAAGAAGTTCATAGAATCGGTTTTGGACTGTCACCGAGCAGAGCTGTCACAGCTCTTCTACCCGCTGTTTGTGCACATGTATCTGGAACTGGTGTACAACAATCACGAAAGTGAGGCCAAGGCGTTCTTCGAAAAGTTCAGTGGCGATCAAGAGTGTTACTACGAAGACGACTTGCGTATATTGTCCAGCCTGTCCAAGAGGGAGCACATGAGAGGCAACGAGACCCTGATGGACTTCCGCACCAGCAAGTTCGTCCTGCGTATCTCCCGTGACTCTTACCAGCTGCTGAAGAGGCACCTGCAGGAGCGTCAGAACAACCAGATCTGGAATATCATACAAGAGCACCTCTACATTGACATCTTTGATGGCATGCCACGCAGCAAGGGCCAGATTGATGCCATGTCCGGCAGCTTGGCAGGAGAGGGCAAACGAGAGGCCAATAAGGCTAAGGTTTACTACGGATTGCTGAAGGAACCGGAAATTGAGCTGCCTCTTGATGATGAGGACGAGGAGGCAGAGAATGAGGAGGGTAAACCCAAGAAGAAGAAACCCAAAAAGGACAGCATGGGCTCCAAGAGCAAGAAGCAGGATCCTAATGCACCTTCACAAACTAGgATACCTCTTCCAGAACTGAAGGATTCAGACAAGCTGGACAAGATCATGTACATGAAGGAGGCCACCAAGAGGATCCGCCTGGGACCAGATAACCTGCCCTCCATCTGCTTCTACACTTTTCTCAATGCTTACCAGGGTCTGACTGCAGTGGACTTCACCGATGACTCCAGCCTGGTCGCGGGAGGCTTCGCTGACTCCACAGTACGGGTGTGGAGTGTCACACCGAAAAAGCTCCGCAAGGTCAAGTCTGCAGCAGACTTGAATCTGATCGACAAAGAGTCAGACGATGTGCTGGAGAGGATCATGGATGAGAAGACGGCCAGTGAGTCAAAGATCCTCTATGGACACAGTGGCCCGGTGTATGGCATCAGCTTCAGCCCAGACAGAAACTACTTGTTGTCAAGTTCTGAAGATGGTACAGTCAGGCTATGGAGTCTACAAACATTTACATGTCTGGTGGGCTACAAAGGCCACAACTACCCAGTGTGGGACACCCACTTTTCCCCCCATGGGTACTATTTTGTCTCTGGGGGACATGACCGAGTTGCCCGTCTGTGGGCTACAGATCACTACCAGCCTCTGCGGATGTTTTCTGGTCACCTAGCTGATGTCACTTGCACCCGCTTCCACCCCAACTCTAATTATGTGGCCACAGGGTCTTCTGATCGCACCATCCGGCTCTGGGATGTCCTGAACGGAAACTGCGTCCGCATCTTCACCGGTCACAAGGGTCCTATCCACACGCTGGCCTTTTCTCCCAATGGGAAGTTCTTGGCTTCCGGAGCCACTGATGGCAGAGTTCTTCTGTGGGACATTGGCCATGGGCTGATGATTGGAGAGCTTAAAGGCCACACAGATACCATCTACTCGCTCCGGTTCAGCAGAGACGGAGAGATCCTTGCCTCCGGCTCAATGGACAACACGGTTCGTCTGTGGGATGCCATGAAAGCTTTTGATGATTTAGAGACCGATGATTTCACAGCGGCTACAGGACACGTCCATCTACAGGATAACTCCCAGGAGCTTCTGCTGGGCACCTACATGTCTAAATCTACACCCGTTATACACCTTCACTTCACCCGCAGGAACCTGCTGCTGGCCACCGGGGCCTACAATCCATGAGACATTGAATTATGAGAAATAATCTATAGAAGTTTAAAATTAAGCAAACGTCTAGTCCCCAAGATCCACAGGTGACTGAAGAGGTTTGTGGTGCAGTTGGAATAAAACCAAACTGTATTATCATCACCTCTGCCAAGAGACTGGCTGTGAATGAAGATACAACTTAAATTAGCCGACTTCTGTTCTGGCCATAAATGAAGCTGATCTACTGCAGATATCCCCTCGCCATGCCAAGTGCCATTGTTGATTGaggactgttttttttaaatcactgccATGATTACAGCTTGTTCAACACGTGGCTAACATTTCCGTATCTTAGTCTTTTATACTGgtgtaaataaaacacacattttcta

Function

symbol description
taf5 Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF5 (TATA-box binding protein associated factor 5).

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 5

GO: NA

KEGG:

id description
K03130 TAF5; transcription initiation factor TFIID subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799762.1 True 2609 mRNA 0.51 11 16403910 16410013

Neighbor

gene id symbol gene type direction distance location
pdcd11 NA coding downstream 1507 16383786 ~ 16402403 (-)
LOC120558661 NA coding downstream 22489 16365265 ~ 16381421 (-)
LOC120558696 rab40c,LOC103358055,LOC100700672,LOC101469960,LOC107089104 coding downstream 41482 16357063 ~ 16362428 (-)
wfikkn1 wfikkn1 coding downstream 46969 16352641 ~ 16356941 (-)
LOC120567135 LOC102194342,LOC101467413,LOC103358059,LOC102294944,LOC100712572 coding downstream 120224 16246404 ~ 16283686 (-)
inab ina,LOC102213292 coding upstream 17485 16427498 ~ 16432084 (-)
cnnm2b cnnm2,LOC102784635 coding upstream 50422 16460435 ~ 16508353 (-)
as3mt as3mt coding upstream 98888 16508901 ~ 16516400 (-)
wbp1lb wbp1l coding upstream 106487 16516500 ~ 16537516 (-)
poll poll,LOC102785494 coding upstream 127642 16537655 ~ 16545278 (-)
G5079 mettl26 non-coding downstream 51442 16350067 ~ 16352468 (-)
G5081 NA non-coding downstream 53927 16348266 ~ 16349983 (-)
G5069 NA non-coding downstream 78064 16325521 ~ 16325846 (-)
G5068 NA non-coding downstream 78587 16325015 ~ 16325323 (-)
LOC120558721 NA non-coding downstream 88023 16311929 ~ 16315887 (-)
G5125 LOC103362543,LOC101066958,LOC101475774,LOC104921624,LOC102209940,LOC103384338 non-coding upstream 239032 16649045 ~ 16651526 (-)
G5140 LOC103362533 non-coding upstream 352355 16762368 ~ 16843003 (-)
LOC120568012 NA non-coding upstream 507061 16917074 ~ 16920726 (-)
G5202 NA non-coding upstream 557896 16967909 ~ 16972243 (-)
G5242 NA non-coding upstream 641615 17051628 ~ 17051857 (-)
LOC120558720 NA other downstream 55988 16345718 ~ 16347922 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 718271 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 1499681 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 1684808 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 2361400 14018902 ~ 14042510 (-)
LOC120569099 NA other upstream 1002040 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 1300626 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 1407494 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 1425891 17835904 ~ 17848037 (-)
LOC120556582 NA other upstream 1469855 17879868 ~ 17881759 (-)

Expression


Co-expression Network