LOC120558696 (rab40c,LOC103358055,LOC100700672,LOC101469960,LOC107089104)


Basic Information

Item Value
gene id LOC120558696
gene name rab40c,LOC103358055,LOC100700672,LOC101469960,LOC107089104
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 16357063 ~ 16362428 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799845.1
GCGTGGGTTGGTAAAGTATTATATCATATCATTTGACATTTCCAATTTTCCATTCATTTAAGTGATTCCCAGTCAGATTAATTAAACATCTACTAATACTGATAAGAAGAGTATCGATGTGATTTTCAAAATCAATCACATTCAAATGATGGGTGAGATTTAGAAAACGCGTGTTAGTGAATTTAAATccggcaaataaaaaaaaaaaaagaagtaagcAACACGTtaggtttgttttatttttttaaataaccggATGTTACGCAGCCAATGATGTCAATACCAGGAAGTTCCAACGCAGTCCACTTGACGTTGTGCTCGGAAGCTGAATAGCCCTCGttggcttttgtttttcttcataaaCAAAGTGGAACAATCGTATTTGCTTTGGTGGAGTATCGTGTTATGTGGGACTAAACCGCCTCGCTTTTACTCAGTATCAATTGTTTGTGCTAGAATGCGTTACTGTCGTTTGTGttagctggctagctagcaCGTCAGCTAACCGCTAGTTAAGGTTGTTTTGGTTATTAACGTGAACGTTAACGTCACATCGACGGTTTACAAAGGGCAGAGTGAATGTAAGTCGTAGGCAGTGTACCAGCTAGTTaatcagctaacgttaacgtcaaAAAGACGGTCGCCTAGCTTTAGCTAGCTACCATTGTTGGGGGGGCGTCTGGTTTGTCCCTTGCCCCGAATAGTGGACGTCTGGCGAGCTTAAAAAGCTCCCTGTGAACCGGGCCCAATGCGTGGGATGATGGGGACCCAGAGTAGTCCAGTCAAGAGTTACGATTATCTCCTGAAATTTCTTTTGGTGGGAGACAGCGATGTTGGAAAGGGAGAAATCTTGGACAGTTTACAAGACGGATCGGTCGAGTCTCCCTATGCCTACAGCAGTGGGATTGATTACAAGACCACCACGATTCTGCTGGATGGGAGAAGAGTGAAATTAGAGTTGTGGGACACATCGGGGCAAGGCAGATTCTGCACCATCTTCAGGTCTTACTCTCGTGGAGCACAGGGCATCCTGCTGGTCTATGACATCACAAACGGCTGGTCCTTTGATGGCATTGACCGCTGGATACGGGAAATTGATGAGCATGCCCCAGGTGTACCCAGGATCCTGGTGGGAAATCGGCTTCACCTGGCTTTCAAGCGGCAGGTACCTACGGAGCAGGCAAGGGCCTATGCTGAAAAGAACAGCATGACTTTTTTTGAGGTCAGTCCGCTGTGCAACTTCAATGTCATCGAATCCTTCACAGAACTCTCACGCATTGTGCTGATGAGGCACGGGATGGAGAAATTCTGGAGGCCCAACAGAGTCTTCAGCCTCCAAGATTTGTGCTGCCGTTCGATCGTCTCCTGCACACCGGTTCACCTCATTGACAAACTGCCCCTTCCTGTGGCCATCAAGTCACACCTCAAGTCTTTCTCCATGGCCAACGGCATGAATGCAGTCATGATGCACGGACGCTCCTACTCAGTGGCCAACAGTGCAGCCTCGGGCAGTAGCGGCGGCGGAAGCAAAGCCAACAGTCTCAAGCGCTCCAAGTCTTTCAGGCCTCCGCAGAGCCCTCCAAAGACCTCGTCATCCTCCTCTAAGGGGAGCTGTAAGATTTCATAGTGAAGGAGCTGACTAATGGTTGCCTCCACAGGGCCAGTATTAAAGGTGTTGTTGCTCCAAGAGGCCACGAGGTCACGAGAGAGCACGGAGAGCCACCAGCAACGGATATAGCTGTGAACTTTCATTGACCCATGGGAACTGACTCGGATGGTTGGATTGGTTTCTGCTCTCTTTGCGCTTGCTGGTGCCATCTTGTGGATGTCCGTTAACCCGTACTCTTTCCTACGGGTGGCTCGCTATGATCAAGTAGAACAAGATTTCCCTGGGACCAACAGATGTGAATCAAAGAGAATCGCTCACCTGTTAACACTAAACATGAGTGGAGGGACATTAgctagcttttattttgaaaaattattgtttttattgtatttaaagtTGTAAATATGCTGTATGTGCTAAAGTTGTTTTGGTCTGTGTTCGGTGATTGATCTTGGAGAGGAGCTTCTTATGCTTGTTTTGTCTTGAATGTTTTCGGAGACCTGCTTCAGTGTCCCGATTTATTTTGTGCGTCTTATACCCTTTGTCTACCGTGGAATATTTTCATTGCAACCTCAAGGGTGCTGAGCTACTTATTTAAATCTCAGATTAGTTATGTTTAAAATTAGACCGTCTTAAATTGAATGTCATGAGAAGAGCAGGGCTAGTTTCCCAGGCtggatttggaaaaaaaattaaaagaccaTTATCCATTGAAAAACACTTAGTCTAGCAATGCTCCATCTGTGAAACCGAGTAGAGCCCACCTGTCTTATTTTGAAGACTTCCTGCAGTGCCTCTTAATTTCAGCCCAAATGAATTCACCCTCTGTCTCCATCAGTCATTGTCAACATCTGTTGACTTTCTCGGGCCATTTTTACCTCTAAAATCTAATATCCTTAGTTGCATTATCATTGCTTTAACTGGTTTAAACCATCAACCACATGCTCCTCAATCAATCTTTTTAACTATTGTGGCAATTCAGAGATTGCTTGGTGCTGATGAGGGAAACCTTGTACAAATCAGATGTGCAGATTGTTTGCTCAGTCGTGGCGTTTTGCCTTCAGAGACAGCTGCGATCGCATCCTGGTTCTTAACAGGAATTTGTTAACTCACTAGACATTGGAGAAAGGAATATTTTAATTTGATTGCTTTTTGGATCTTCTCTGTATATGCAATGTATTTATGAATGTAACACAATATTCATCTGCTACTTTGCTGTGGTAATATGTGGGACTGTAAGAATCGGAGGTGGGAAGGTAATCTGCTATTGTGAGTTTTTTAATAAGCGTTGAGTATTTGTACTGTAACTTCATTCTTATTTTCTAACCCTcctaaaatgtgtgtgtaatagtAGGGGTTAGAATGATTTGTCAGATGAACTTGAAGGCTTCAACGAGGCCACTGAAAGTCTTGTATTTTTAATCAGAGCTAACTAATgatattgtttttaataattaaataatctacaCAAATACTTATTTTGCTTATAAAGGTTATATGTTTTCTTTCCACCTCTGATTCACGTAGCTGTAGCTGTATTTCCACTTCAACATTCCCAGTGTCATGGCTATGTGTCTGTGATACGGTCATTGAGGGCATACAGAAATGGTGCATGTTTTTCTACTGGTGCCTGTTTTATGTGGTCTATTGAGACCAGCACAATGAGCTATTTAAAGCACTATATGTAAACGTTTGATAATGATTGTTGCGATCAGAGATGTGTGTCTTAAAGATTTGGATACGGGATAATTTTGTGTCCATTGAAAACAGTCACCCAACAAAATAAAGGGTAAAGCTCCA

Function

symbol description
rab40c Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in protein localization to plasma membrane. Predicted to act upstream of or within intracellular signal transduction. Predicted to be active in endosome; plasma membrane; and synaptic vesicle. Is expressed in central nervous system; cranial ganglion; forebrain; and retina. Orthologous to human RAB40C (RAB40C, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-40C-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07928 RAB40; Ras-related protein Rab-40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799845.1 True 3409 mRNA 0.43 6 16357063 16362428

Neighbor

gene id symbol gene type direction distance location
wfikkn1 wfikkn1 coding downstream 122 16352641 ~ 16356941 (-)
LOC120567135 LOC102194342,LOC101467413,LOC103358059,LOC102294944,LOC100712572 coding downstream 73377 16246404 ~ 16283686 (-)
sec23b LOC100697981,LOC102779165,LOC101466658 coding downstream 278720 16064549 ~ 16078343 (-)
LOC120561637 gsg1l,LOC104954731,LOC103358062 coding downstream 298710 16050764 ~ 16058353 (-)
nomo LOC446065,LOC107089097,LOC105931477,LOC102292868,LOC102196167 coding downstream 322448 15994372 ~ 16034615 (-)
LOC120558661 NA coding upstream 2837 16365265 ~ 16381421 (-)
pdcd11 NA coding upstream 21358 16383786 ~ 16402403 (-)
taf5 taf5 coding upstream 41482 16403910 ~ 16410013 (-)
inab ina,LOC102213292 coding upstream 65070 16427498 ~ 16432084 (-)
cnnm2b cnnm2,LOC102784635 coding upstream 98007 16460435 ~ 16508353 (-)
G5079 mettl26 non-coding downstream 4595 16350067 ~ 16352468 (-)
G5081 NA non-coding downstream 7080 16348266 ~ 16349983 (-)
G5069 NA non-coding downstream 31217 16325521 ~ 16325846 (-)
G5068 NA non-coding downstream 31740 16325015 ~ 16325323 (-)
LOC120558721 NA non-coding downstream 41176 16311929 ~ 16315887 (-)
G5125 LOC103362543,LOC101066958,LOC101475774,LOC104921624,LOC102209940,LOC103384338 non-coding upstream 286617 16649045 ~ 16651526 (-)
G5140 LOC103362533 non-coding upstream 399940 16762368 ~ 16843003 (-)
LOC120568012 NA non-coding upstream 554646 16917074 ~ 16920726 (-)
G5202 NA non-coding upstream 605481 16967909 ~ 16972243 (-)
G5242 NA non-coding upstream 689200 17051628 ~ 17051857 (-)
LOC120558720 NA other downstream 9141 16345718 ~ 16347922 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 671424 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 1452834 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 1637961 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 2314553 14018902 ~ 14042510 (-)
LOC120569099 NA other upstream 1049625 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 1348211 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 1455079 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 1473476 17835904 ~ 17848037 (-)
LOC120556582 NA other upstream 1517440 17879868 ~ 17881759 (-)

Expression


Co-expression Network