si:dkey-45d16.4 (LOC104950130)


Basic Information

Item Value
gene id si:dkey-45d16.4
gene name LOC104950130
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 22635884 ~ 22641744 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799958.1
GTCAGTAGGAAACCTGTACTGGTGACTGGACGTGTGCAGTGCGCGTCAGGCGGTTCCCGGATGCACCAAACAGAAACATGGAACGGGTAGTGGTGGAAGTGCCGATCAACAACGGTTTTTCTCTTGCTGGCCCCTCGACAACCCCACGAAAGCGTCAGGTGCGTTTTTCAGCGCGGCATGACATCATCCTTCTGAGGGAGGTTATCGCCCAGAACCCCTTTGCCTCCAAAGAGCCAGGACGGATCTGGGCCCGTGTGGGGGAGATCATCACTGCAGCTCTTCAAGATGAAAACTTTGAGGTGGATGCCAGGAGGTGCAGGGAGAGGACCATGCTTTTGCTGGACTACTACAAGAAACAAGACTTTCCCAGCCTGCGCAGATTTGGAACAGAGAGGTTGTACGCCCAAAAGGAAGATCTGCTCCATGAGGTTTTGGAGCTGGAGGCTGAGAAAGGGCTTCTAGCCAGCGGGGAAAACACAAAGTACCAGGATGATGAACTGAGAAAGCGAGCCATAGAAGAACTAAGTCTACCAGAGCAGGACAAACCCAACATCACcatcacacaaacacccactgCAGCAGAACCAGAGGAAGACCGTGAGGAAATGGCACAGCTTTCAGTGGCGCCCATGGCCAAGCAGCCCTGCCAGTGCTGCTGCCAGACCTACTCTGAGATTCTCAGCTTCCTGGAGAAACGCTCAGAGGCGGAGCAACGGCTACGAGAGGAGGAACTTGCCTTGCGCCGGGAAGAGCTGGAGATTCAAAGGAGTAAGATCACTCTGGAAAGGGAACGTCTGGGAgctgagagaaaagagagggaacGGAGATTTGAGCTGGAGAGCCAAGAGAGGCAGGTCATCTTGGATCTGCTAAAAGAAAAGGTGCTGAaaggctgaaaactgtatcacctGCAATTTAATGCCATCTTTCAAAGCATGAAATTGGGAAACAACATAGTTGACCGCTTAAACGAGGAAGGAAACCAaggaaacaggaagtaaaaAGATCAATGGTTGTAGGGTGTTACATACAGGTTATTGTAAAATAACTAAACAAAATGGAGGGCGGTAAGCAGTTGCCACAACAGCCAAACAAATGACATAATGTTGAGAGTGTCTGGGTGTATGTAGgcatgtattgtgtgtgtggtgcacaAAGTACCAAAAATACATTAACCTGCAGACAGTGTTTAAAAGCTGCAATAATTTCCTGAACCAGCTGCACAAAGCTGACCCATATAGATCCCAGTAGACACTCGCTGCGTTGCTGTCTGAATGGGGATTTAAAAGCACTGCAATTGCTGGAGTGTCACCTAAGAAATGGAATGCAGAAAAgggtgtgtgtgcggtgtcttAGGTGTGGTCATTGACTGAGCCAAAACTGGCTGACATGCAGGATCACTGTTGCACCAATAAGTCCTGTTCACACCAAGGGACACCATTATTTGTGGTGCCAGGGTGAAAGAAATCGAGGAACAACTAAGAAAAGATGTATCTTCAAGTAGTTCACAATAAAGTTATGGTGCAGCTCAAGCTTTTGAAAACCCTGTAGCATTTACCAGATTAATGGCTTCACACATGCTAGATTCAGCCACTTCTTTTTtcaatttgatttttttctttttttattaaaatagaaataaaactatATTTTACTGACTGTGAATCCACTGTACAGAGAGCACTTTTGTACTGCAAATAATACAAGCCATTACGTGGGTGTCCATATTCTATAGATTATACAGAAACCACTTTTTTTAACTTATGTTAGTGTCACAACTGTTGTACACAAATTTTGCTAGAAGATAATTATTAGTCAAATGTATGTCCTCAGTTGAATTTGTTGTACCCAGGTACAGTTAACTGTCATTGGTTATAGTTGCAATATTACATTAACATGGAATTGATGACACGACACTTTTTATTACATGTTCCACTGATttattcaacacattctcactcccatcgcgtaaaatacggattcttggtcaggtgcctttggcgttgttaatGACGCTAAAAATCTCCTTTAGTGtcatatctaaacgcgctttatCTGAAGGCGCTTGGGCGGGACTATtgaagaaagcgacggttgggtttagaaaacgtgacacacgggacacgatccccggtctcctgggtttaagtcctgtgt
>XM_039799965.1
GTCAGTAGGAAACCTGTACTGGTGACTGGACGTGTGCAGTGCGCGTCAGGCGGTTCCCGGATGCACCAAACAGAAACATGGAACGGGTAGTGGTGGAAGTGCCGATCAACAACGGTTTTTCTCTTGCTGGCCCCTCGACAACCCCACGAAAGCGTCAGGTGCGTTTTTCAGCGCGGCATGACATCATCCTTCTGAGGGAGGTTATCGCCCAGAACCCCTTTGCCTCCAAAGAGCCAGGACGGATCTGGGCCCGTGTGGGGGAGATCATCACTGCAGCTCTTCAAGATGAAAACTTTGAGGTGGATGCCAGGAGGTGCAGGGAGAGGACCATGCTTTTGCTGGACTACTACAAGAAACAAGACTTTCCCAGCCTGCGCAGATTTGGAACAGAGAGGTTGTACGCCCAAAAGGAAGATCTGCTCCATGAGGTTTTGGAGCTGGAGGCTGAGAAAGGGCTTCTAGCCAGCGGGGAAAACACAAAGTACCAGGATGATGAACTGAGAAAGCGAGCCATAGAAGAACTAAGTCTACCAGAGCAGGACAAACCCAACATCACcatcacacaaacacccactgCAGAACCAGAGGAAGACCGTGAGGAAATGGCACAGCTTTCAGTGGCGCCCATGGCCAAGCAGCCCTGCCAGTGCTGCTGCCAGACCTACTCTGAGATTCTCAGCTTCCTGGAGAAACGCTCAGAGGCGGAGCAACGGCTACGAGAGGAGGAACTTGCCTTGCGCCGGGAAGAGCTGGAGATTCAAAGGAGTAAGATCACTCTGGAAAGGGAACGTCTGGGAgctgagagaaaagagagggaacGGAGATTTGAGCTGGAGAGCCAAGAGAGGCAGGTCATCTTGGATCTGCTAAAAGAAAAGGTGCTGAaaggctgaaaactgtatcacctGCAATTTAATGCCATCTTTCAAAGCATGAAATTGGGAAACAACATAGTTGACCGCTTAAACGAGGAAGGAAACCAaggaaacaggaagtaaaaAGATCAATGGTTGTAGGGTGTTACATACAGGTTATTGTAAAATAACTAAACAAAATGGAGGGCGGTAAGCAGTTGCCACAACAGCCAAACAAATGACATAATGTTGAGAGTGTCTGGGTGTATGTAGgcatgtattgtgtgtgtggtgcacaAAGTACCAAAAATACATTAACCTGCAGACAGTGTTTAAAAGCTGCAATAATTTCCTGAACCAGCTGCACAAAGCTGACCCATATAGATCCCAGTAGACACTCGCTGCGTTGCTGTCTGAATGGGGATTTAAAAGCACTGCAATTGCTGGAGTGTCACCTAAGAAATGGAATGCAGAAAAgggtgtgtgtgcggtgtcttAGGTGTGGTCATTGACTGAGCCAAAACTGGCTGACATGCAGGATCACTGTTGCACCAATAAGTCCTGTTCACACCAAGGGACACCATTATTTGTGGTGCCAGGGTGAAAGAAATCGAGGAACAACTAAGAAAAGATGTATCTTCAAGTAGTTCACAATAAAGTTATGGTGCAGCTCAAGCTTTTGAAAACCCTGTAGCATTTACCAGATTAATGGCTTCACACATGCTAGATTCAGCCACTTCTTTTTtcaatttgatttttttctttttttattaaaatagaaataaaactatATTTTACTGACTGTGAATCCACTGTACAGAGAGCACTTTTGTACTGCAAATAATACAAGCCATTACGTGGGTGTCCATATTCTATAGATTATACAGAAACCACTTTTTTTAACTTATGTTAGTGTCACAACTGTTGTACACAAATTTTGCTAGAAGATAATTATTAGTCAAATGTATGTCCTCAGTTGAATTTGTTGTACCCAGGTACAGTTAACTGTCATTGGTTATAGTTGCAATATTACATTAACATGGAATTGATGACACGACACTTTTTATTACATGTTCCACTGATttattcaacacattctcactcccatcgcgtaaaatacggattcttggtcaggtgcctttggcgttgttaatGACGCTAAAAATCTCCTTTAGTGtcatatctaaacgcgctttatCTGAAGGCGCTTGGGCGGGACTATtgaagaaagcgacggttgggtttagaaaacgtgacacacgggacacgatccccggtctcctgggtttaagtcctgtgt

Function

NR:

description
PREDICTED: scaffold attachment factor B1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799958.1 True 2157 mRNA 0.45 7 22635884 22641744
XM_039799965.1 False 2154 mRNA 0.45 7 22635884 22641744

Neighbor

gene id symbol gene type direction distance location
LOC120558725 LOC103354901,LOC103383579 coding downstream 944 22619670 ~ 22634940 (-)
LOC120562917 LOC103354903 coding downstream 97374 22412600 ~ 22538510 (-)
evi5l evi5l,LOC100697259 coding downstream 315337 22275666 ~ 22320547 (-)
LOC120556520 NA coding downstream 362802 22266418 ~ 22273082 (-)
LOC120556437 mcoln1 coding downstream 397024 22216256 ~ 22238860 (-)
LOC120558762 LOC108242699,LOC106536899,LOC103354898,LOC100703987,LOC103383580 coding upstream 12437 22654181 ~ 22665213 (-)
pik3r5 pik3r5 coding upstream 51043 22692787 ~ 22720815 (-)
stx8 stx8 coding upstream 143751 22785495 ~ 22834464 (-)
mchr1a LOC103354888,LOC104947992,LOC102295449,LOC102791021 coding upstream 352124 22993868 ~ 22997980 (-)
LOC120561952 NA coding upstream 529063 23170807 ~ 23173617 (-)
LOC120562974 NA non-coding downstream 31931 22601388 ~ 22603953 (-)
G6762 ddx39a,LOC103150096 non-coding downstream 310501 22324550 ~ 22325383 (-)
G6764 NA non-coding downstream 369892 22264384 ~ 22265992 (-)
G6731 NA non-coding downstream 544327 22090500 ~ 22091557 (-)
LOC120569580 NA non-coding downstream 596733 22039009 ~ 22039151 (-)
G6834 NA non-coding upstream 9788 22651532 ~ 22653786 (-)
G6879 NA non-coding upstream 283087 22924831 ~ 22933891 (-)
G6880 usp43 non-coding upstream 331138 22972882 ~ 22973326 (-)
G6907 LOC107382332,LOC106515271,LOC102218172,LOC108242722,LOC103383557 non-coding upstream 411575 23053319 ~ 23058150 (-)
LOC120556418 NA non-coding upstream 488710 23130454 ~ 23135775 (-)
LOC120556502 LOC104944681,LOC103364456 other downstream 300301 22328519 ~ 22335583 (-)
G6592 ube2o,LOC106534564 other downstream 926072 21708540 ~ 21709812 (-)
LOC120566957 NA other downstream 1066825 21563091 ~ 21569059 (-)
LOC120574674 NA other downstream 2442546 20187281 ~ 20193338 (-)
spink4 NA other downstream 2591158 20042763 ~ 20044726 (-)
LOC120565362 pik3r6 other upstream 23631 22665375 ~ 22692333 (-)
G6881 usp43,LOC104947996 other upstream 340181 22981925 ~ 22988500 (-)
G6924 NA other upstream 446756 23088500 ~ 23164937 (-)
G6943 NA other upstream 572112 23213856 ~ 23242290 (-)
G7065 NA other upstream 930961 23572705 ~ 23573049 (-)

Expression


Co-expression Network