LOC120558762 (LOC108242699,LOC106536899,LOC103354898,LOC100703987,LOC103383580)


Basic Information

Item Value
gene id LOC120558762
gene name LOC108242699,LOC106536899,LOC103354898,LOC100703987,LOC103383580
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 22654181 ~ 22665213 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039799979.1
GGCACCAGCCACATCTGGTGGGGACCGCTGGAGCATCTTGCTCTCTCCGCCTCCACAGGTTTGTGTGTGACTGGCGATGACTCAATGTAATACAGTGCAAACTGAGACTGCGAGACCCTCCCCTGTAGTTTCCACTTGCTGTTTCCCAGCCACTGCAACTGGAAGCCTAGAGAGAACAGAGGAGAGCAGCTGCTGGATCgatggagaagaagaagggaTCTTCTCGTCAGTACGGTTCACTGGAGCTCACTGAATGGAGCAAAGACACCAACAAACCAGAGGACGATGTGGTGTCCATGGCGGACTCCACCATCACCGTGGACGACATTGAGGGGGAGCTTTTTAAGATTGAGAGGATCAGGGACGTCCTGGTCAGGAGGGAGTCAGAGCTTAGATACATGATGGATGACATTCAGCTGTGCAAGGAGATCACTCGTCTCAAGAAAGAGCTGCAGAAATTAGTGTCCATACCAGATAATGACAAGTCAAACGAGGACCGGCAGAAGGAAGAAGAACTACTGCAGCAGATCCACAAGCTGGTCGAGACCAGAGATTTCCTGGTGGACGATGTGGAGTTTGAACGACTCAGGGAGAAAGAAGAGGATAAAGAAATGGCAGATTTTCTGCAGTCCAAATTCCCAAGAAATATGAAGAAGAAAGGTGTACCAACCAGACGGGCTCCATCCAGGGCTCAGCAGGCATCTTCTCCCTTCGCCAAGACAGGCCTCACTCTGCTAAAGgagtgttgtggcttcacatgCTCCATCATGTAGACTGGAGTCGAAATGGAGGGCCCCACTGCAGGGTTGACACAGGGGCCACAAATCAAAATTGGCCAATCCACAAGAGTCAATATTTCCAGTTTCAGCTTTTCAGTCCGAGAAAGACTTTGAAGCATGGATGGAGTAGTACAGATGCAAGTTGAGAATTCCCCAGAGGGAGTGCAAAGTATGTTGCAAAGATCATGTGGTGTGTTTCCCATGCCAAGACCCAAGTTTGTCTTGGGTTGGATCTGTTTGTCTCTTTCATTGGATTttatatcttgttttgttttcatgctgTCTCTGCTCTCCACGTCTCTCAACCCACTCCCGTTTTCATTTTTACTCTTGTTAATCATAACTGCTCAGCAAACTTCTTGTGATCATCAGCTTCCAAAAGGAACAACCAGACACatagtttttatttctctttttcagGCCGAGAGGACAGGGTTTGAAGGACAGAAACAGCATAGCACAAGTCAGGCATGTATTGTGAACACACTAATTGGATTCAACTacc
>XM_039799989.1
TAGTGGTGGTATTGGTATTTCCCTTATTATGTCCGTCTCGGCCCCCATGTTGTGCAGCTCTCTGCAGGGAAGTGACAGTTATCCAGGAACATACAGTGCTAAATGGAACAATTCGAGAGCAGGCAGTGGTGATTTTCTTCAATTTTAAAGTTGTGACTGTCACTACATCTACCTTCAAGAATGTCAACCATACTTGGATCTCAGGAGGACGATGTGGTGTCCATGGCGGACTCCACCATCACCGTGGACGACATTGAGGGGGAGCTTTTTAAGATTGAGAGGATCAGGGACGTCCTGGTCAGGAGGGAGTCAGAGCTTAGATACATGATGGATGACATTCAGCTGTGCAAGGAGATCACTCGTCTCAAGAAAGAGCTGCAGAAATTAGTGTCCATACCAGATAATGACAAGTCAAACGAGGACCGGCAGAAGGAAGAAGAACTACTGCAGCAGATCCACAAGCTGGTCGAGACCAGAGATTTCCTGGTGGACGATGTGGAGTTTGAACGACTCAGGGAGAAAGAAGAGGATAAAGAAATGGCAGATTTTCTGCAGTCCAAATTCCCAAGAAATATGAAGAAGAAAGGTGTACCAACCAGACGGGCTCCATCCAGGGCTCAGCAGGCATCTTCTCCCTTCGCCAAGACAGGCCTCACTCTGCTAAAGgagtgttgtggcttcacatgCTCCATCATGTAGACTGGAGTCGAAATGGAGGGCCCCACTGCAGGGTTGACACAGGGGCCACAAATCAAAATTGGCCAATCCACAAGAGTCAATATTTCCAGTTTCAGCTTTTCAGTCCGAGAAAGACTTTGAAGCATGGATGGAGTAGTACAGATGCAAGTTGAGAATTCCCCAGAGGGAGTGCAAAGTATGTTGCAAAGATCATGTGGTGTGTTTCCCATGCCAAGACCCAAGTTTGTCTTGGGTTGGATCTGTTTGTCTCTTTCATTGGATTttatatcttgttttgttttcatgctgTCTCTGCTCTCCACGTCTCTCAACCCACTCCCGTTTTCATTTTTACTCTTGTTAATCATAACTGCTCAGCAAACTTCTTGTGATCATCAGCTTCCAAAAGGAACAACCAGACACatagtttttatttctctttttcagGCCGAGAGGACAGGGTTTGAAGGACAGAAACAGCATAGCACAAGTCAGGCATGTATTGTGAACACACTAATTGGATTCAACTacc

Function

NR:

description
PREDICTED: uncharacterized protein C16orf45 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039799979.1 True 1284 mRNA 0.48 6 22654181 22665213
XM_039799989.1 False 1210 mRNA 0.46 6 22654181 22661542

Neighbor

gene id symbol gene type direction distance location
si:dkey-45d16.4 LOC104950130 coding downstream 12437 22635884 ~ 22641744 (-)
LOC120558725 LOC103354901,LOC103383579 coding downstream 19241 22619670 ~ 22634940 (-)
LOC120562917 LOC103354903 coding downstream 115671 22412600 ~ 22538510 (-)
evi5l evi5l,LOC100697259 coding downstream 333634 22275666 ~ 22320547 (-)
LOC120556520 NA coding downstream 381099 22266418 ~ 22273082 (-)
pik3r5 pik3r5 coding upstream 27574 22692787 ~ 22720815 (-)
stx8 stx8 coding upstream 120282 22785495 ~ 22834464 (-)
mchr1a LOC103354888,LOC104947992,LOC102295449,LOC102791021 coding upstream 328655 22993868 ~ 22997980 (-)
LOC120561952 NA coding upstream 505594 23170807 ~ 23173617 (-)
LOC120546964 NA coding upstream 755067 23420280 ~ 23431271 (-)
G6834 NA non-coding downstream 395 22651532 ~ 22653786 (-)
LOC120562974 NA non-coding downstream 50228 22601388 ~ 22603953 (-)
G6762 ddx39a,LOC103150096 non-coding downstream 328798 22324550 ~ 22325383 (-)
G6764 NA non-coding downstream 388189 22264384 ~ 22265992 (-)
G6731 NA non-coding downstream 562624 22090500 ~ 22091557 (-)
G6879 NA non-coding upstream 259618 22924831 ~ 22933891 (-)
G6880 usp43 non-coding upstream 307669 22972882 ~ 22973326 (-)
G6907 LOC107382332,LOC106515271,LOC102218172,LOC108242722,LOC103383557 non-coding upstream 388106 23053319 ~ 23058150 (-)
LOC120556418 NA non-coding upstream 465241 23130454 ~ 23135775 (-)
G6947 LOC104947985,LOC103354881 non-coding upstream 584982 23250195 ~ 23253876 (-)
LOC120556502 LOC104944681,LOC103364456 other downstream 318598 22328519 ~ 22335583 (-)
G6592 ube2o,LOC106534564 other downstream 944369 21708540 ~ 21709812 (-)
LOC120566957 NA other downstream 1085122 21563091 ~ 21569059 (-)
LOC120574674 NA other downstream 2460843 20187281 ~ 20193338 (-)
spink4 NA other downstream 2609455 20042763 ~ 20044726 (-)
LOC120565362 pik3r6 other upstream 162 22665375 ~ 22692333 (-)
G6881 usp43,LOC104947996 other upstream 316712 22981925 ~ 22988500 (-)
G6924 NA other upstream 423287 23088500 ~ 23164937 (-)
G6943 NA other upstream 548643 23213856 ~ 23242290 (-)
G7065 NA other upstream 907492 23572705 ~ 23573049 (-)

Expression


Co-expression Network