hoga1 (hoga1,LOC102797601)


Basic Information

Item Value
gene id hoga1
gene name hoga1,LOC102797601
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9304947 ~ 9331554 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801172.1
CTGTTGCATTAGCCGGTTGCGTGGCTAACATTTCGTGCGGAAAATCGTTGTTTCTAACCGCCTGACAAACATGTCGAACGTGTGTCAGGTAACCGTGTGAAATTAATCAACAGAAAAGCCAGAATCTTAGCTACCTGCCACGGAGAGCAAAAAGTGGCCGATTAAAACCGCGCTTCATTCTGCGCGAACAGAGTCGTTTTTAAGAGTTGAGAGACACTTTCAAAGTTGTTAAGAAATCACAAATTCTGGTCAATATTTACAAAAGCGGGTTAGTCATTAACCGTCCTCGGTTGCAGCAGCTGCACAGAGTCCCACCTCGCACACAGTCAGCGAGCCGCTCGGCCACTCTGCCCGCTTTGCAATGCTTCGCGTACGGGCATGGAGAAGCTTGAGTCCCGTGTGCAGAGGAGTTCACCTGTCGGCATGGAAACGAACCCAGAGCCACACCGCAGCAGCTGCCAGGCTGGACCTCGGCGGTATTTATCCGCCCATTGCCACTCCGTTCACCGCCAAGGAGGACGTGGACTACCAGAAACTGGAGGGAAACCTGCAGAAATATGCCAAGATACCATTTAAAGGTCTGGTGGTTCAGGGCTCCAACGGGGAGTACCCGTACCTGACGGAGGAGGAACGGGTGGAGGTGGTGAAGACGGTCAGGAGATCACTGCCCACCGACAAACTGCTGATGGCCGGATCAGGCTGTgaatCCACGAGAGCCACAGTGCAGCTCACGGAGAAGATGGCGGCAGCCGGAGCCGACGTCGTCCTCGTGGTAACGCCGTGCTTCTATAAGGGCAAGATGGACGGCCGCGCTCTGATCCAGCACTTCACAAAGGTGGCGGACAGCAGCCCGGTGCCGGTGGTTCTGTACAGCGTACCGGCCAACACGGGGCTGGAGCTGCCGCTGGACGCTGTGGTGCAGCTGTCTCAGCACCCAAACATCCTGGGCCTTAAGGACAGCGGAGGAGATATCTCCCGGATCGGCCTGATTGTTCACAAAACCAAAACGCAGGATTTCCAGGTGTTGGCGGGCTCAGCAGGGTTCCTCATGGCCGCCTATTGTGTTGGTGCGGTTGGCGGAGTGTGTGCGCTGGCTAACGTTCTGGGCCAGGAGCTGTGCGAGTTGGAGCGTCTGTGCGTGTCCGGTCGCTGGGACGAAGCCAGAGTCCTGCAGCAGCGCCTCATCGAGCCCAACGCCGCCGTGACCAGGAAGTTGGGAGTCCCCGCCCTCAAGCAGGCAATGGAGTGGTTTGGTTTCCACGGCGGCGCCTGTCGATCACCTCTTCAGCCGCTCACAGAGGCCGAGGCTCAGCAGCTGAGGCGGGACTTCTCCTCCAACGGCTGGCTGTGAGGTGACACGGGTGACGGgcagagtgtgagtgtgagtgtgagtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtttagCAGGTCAGCCCTTACGGGCCATTGCATGCATGTATGCGGAGTGGATGTTCCAAAAATACGCTTCCACTATAATCAATGAAACTGTCAGTGGTGCGCCTGCTCCGCAGAGATCCGCTCTACAAGGGTAAAAATAGGACAGTCTTCCATCTGTATGTTTTACCCGAGGTGTGTGCGTCCCTTTcacacagaaatggatcataaagtgtctATATATACCAATATACAGGAAACACCTTGATGACTGTCAATGAGCGTATtggcagttttattttgagagtttctgttttttgaTTTCTTGTTTCCTGCCACCtgcgtcctctgataacagctgacagtagattgacgtttcacagcgctgtgctgAAGAACCAACAACAATCCCAAAGCAGAGGCTCCCCCCTCTCGCCTGTGAGGTATGGCGTGCGTGCGCTGCTGGTGGAGCCAGTTAAAACATACATTCCGCGGCACATCTGCTCCACATACGGTACGCGTTCAAATTTAGCCAAAGCGTTCGACCTGTCAGTGTGATTTGGCAAGGAGGGGGAACACCTAGGATTGGGCATGGAggttccatttttattttaattcttttttcaatttttattgGAATCGAAAATTTGGTTTCGAAACCtatcatcggttccaaatttaacacacAAGTTTGGGTTTTCCGTAGCGGCGGCCGTACTTCCAGCcacggagcacagtaagcggcacTCTagcgtggctttattttacgttgttAAAGCCTGTAAATCACcattgagtcaaaataaaataaaatggtccTCTTATCTgagaaataagcatgtgactcGTTTCAACTTCACCcatcaaagaatcggaatcgagaatcgataagatcccgaatcgaaaggaagaatcagaattgttaaaatcaaaacggTGCCCAACCCTAGGAACGCTGCACGAAAATAAATCCGTTGCTGCCCCCTCATAAAAATACCAAAAAATCAACTTAATTAGGTTCATATATATCTTTCCATATACGTCATATACTGGGGGTTTGTTTCTAAAAATTTCTTACGTCTTACGTTTTCTGTCATAAATAAAACCTCAGTCAAATCAAAGATTTCCCAAATGAATACAacttagatgttttttttaataggcTCTGCTCATGTTGCattttaagttacattttctATTCatacttctttttattttacactaaAATCACTGTCGTACGGTCAAGTTGCTTCTCTGCTGCCCCTCCCAATAGTGCAGATAGAAAAATTCTGTACATTGAAAAGTTAGAAAAATGTTGCATGTGCACTTGTTTTGACCAATAAAATTGCATTTCACTTCAATAA

Function

symbol description
hoga1 Predicted to enable 4-hydroxy-2-oxoglutarate aldolase activity. Predicted to be involved in glyoxylate catabolic process. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in primary hyperoxaluria type 3. Orthologous to human HOGA1 (4-hydroxy-2-oxoglutarate aldolase 1).

NR:

description
4-hydroxy-2-oxoglutarate aldolase, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016829 lyase activity molecular_function

KEGG:

id description
K18123 HOGA1; 4-hydroxy-2-oxoglutarate aldolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801172.1 True 2811 mRNA 0.49 7 9304947 9331554

Neighbor

gene id symbol gene type direction distance location
lcor LOC103370035,LOC102205115,LOC102298371,LOC101480656,LOC102797307,LOC105931196 coding downstream 58042 9165988 ~ 9246905 (-)
LOC120565400 NA coding downstream 293369 9006939 ~ 9011578 (-)
LOC120559379 NA coding downstream 350105 8943845 ~ 8954842 (-)
dla LOC103359048,LOC108245305 coding downstream 385803 8912382 ~ 8919144 (-)
myom2a myom2,LOC103359051,LOC101482792,LOC102300862 coding downstream 447169 8818287 ~ 8857778 (-)
LOC120559457 LOC103383201,LOC105931257 coding upstream 65276 9396830 ~ 9412357 (-)
LOC120559444 LOC103373853,LOC100706153,LOC102224648,LOC104962798,LOC108246276 coding upstream 146126 9477680 ~ 9489740 (-)
atpv0e2 LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 coding upstream 246888 9578442 ~ 9587966 (-)
LOC120565745 NA coding upstream 840531 10172085 ~ 10181987 (-)
LOC120567750 LOC103370659 coding upstream 1165769 10497323 ~ 10571770 (-)
G3049 NA non-coding downstream 144775 9155939 ~ 9160172 (-)
G3048 NA non-coding downstream 151248 9153250 ~ 9153699 (-)
G3053 NA non-coding downstream 178247 9126183 ~ 9126700 (-)
G3052 NA non-coding downstream 180936 9121713 ~ 9124011 (-)
G3036 NA non-coding downstream 277003 9027007 ~ 9027944 (-)
G3309 NA non-coding upstream 76117 9407671 ~ 9496783 (-)
LOC120559537 NA non-coding upstream 143132 9474686 ~ 9476015 (-)
G3331 NA non-coding upstream 162240 9493794 ~ 9494486 (-)
G3315 NA non-coding upstream 186751 9518305 ~ 9605820 (-)
G3346 NA non-coding upstream 307487 9639041 ~ 9652295 (-)
G3011 zbtb45,LOC100704009,LOC108245322,LOC107382413,LOC105931202 other downstream 396861 8905672 ~ 8908086 (-)
G2938 LOC107098689,LOC103359055 other downstream 536974 8758649 ~ 8767973 (-)
wipf2a NA other downstream 803785 8435799 ~ 8501162 (-)
G2840 NA other downstream 1095412 8207252 ~ 8209535 (-)
capn9 capn9 other downstream 1347326 7935940 ~ 7957621 (-)
G3312 LOC103374337,LOC102079284,LOC102799559,LOC102201385,LOC101477163,LOC105417663,LOC102294705,LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 other upstream 177050 9508604 ~ 9640514 (-)
LOC120559295 LOC102079284,LOC103374337,LOC105417663,LOC102799559,LOC102201385,LOC102294705,LOC101477163 other upstream 193707 9525261 ~ 9567845 (-)
G3373 LOC103359075 other upstream 509036 9840590 ~ 10042004 (-)
LOC120559237 LOC103359075 other upstream 526526 9858080 ~ 10211304 (-)
G3586 LOC104950333 other upstream 1568004 10899558 ~ 10905235 (-)

Expression


Co-expression Network