LOC120559642 (slc27a1,LOC103362239)


Basic Information

Item Value
gene id LOC120559642
gene name slc27a1,LOC103362239
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 18743569 ~ 18751991 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801526.1
GCAGCAGTTTATGTTGTAAGCTGCGCTGCGTTCAGCTTCAGTACGTGCTGCCGCTCATCACGTATTGTCCTTCTGACTTCTGACAACTCACGAGTAGGCTATAAGCGGCAGTGGCtcgactgaaaaaaaaagttaactttaCCGATAGCCTACATCTTTGGACTTGAGGAGGAGCTTTGCTGacgttttctttatttcttgctGAATCGAGATTGAAATTCTCGGACAGAGAGCACCATGCATGCGGTGAGTGGTGTCACAGCGTTCTTCGGTGTGTTTGGGGCTGTCACCCTGCTCTCCCTCCCCTGGCTCTGCAGCCTGTTGGCTGGGCTGGGGCTCTGCATGGTCTGGAGGGGATCCTGGAAGTTCATACATGTAGCTCTACGCACCATCAAAAGAGACCTAATGTGTCTGGTCGTCATCCTGCGTATAAGGTTTTCCATGTACCGCAATTTGCGAAATAGAAGCACCATCCCTGCCCTGTTTGGCCAGATGGTGAAACTGCACCCAGACAAAGCTGCTTTGATCTATGAGGCTACAGGAGAGgTTTGGAGTTTCAAGGAGCTGCAAAAGAGGAGCCATGCTGTGGCTCACTGGGCACTGACACAGGGATGGGCTGAGGGAGATGTGGTGGCCTTGTACATGGAAAGCCAGCCTTTAATGGTGGCTCTATGGTTGGGTCTGGCTATGGTCGGCGTAGAGGCTGCACTCATCAACCACAACCTTCGACAACACTCGTTACTGCACTGTGTCAGCGTGTCTGGTGCTCGGGCAATGGTTTTCGGGACAGAGATGGGAGAAGCGGTGTCAGAGGTGAGTGGCTCTCTGCAGCCCCACATGGTTTTGTTCAGCAGTGGTGTGCGGGACGATGAAGAGAAGCTCCGCAGCCTCCAGATTCAGAGCCTGGATGTCCTGCTGGACCGTTCGCCCAAACACCCACCACGCTACACACTCAGGAAGAACTTCAATGacagacTTTTCTACATCTACACTTCGGGTACAACAGGAATGCCGAAAGCAGCTGTGGTGGTGCACAGTCGGTATTATCGCATCGCCGCCTTTGGTTTCCACTCCTTTGGCTTGTGTCATGATGACATCATCTACAACTGTCTTCCCTTGTATCATTCTGCAGGTACCATCATGGGTGTCGGCCAGTGTCTGCTCTTTGGTTTGACTGTTGTAGTCAGAAGGAAGTTCTCAGCCAGTCGCTTCTGGGATGACTGTGTCAAACACAAGTGCACTGTAATTCAATACATAGGTGAGATTTGTCGTTACCTGTTGGCCCAGCCGGTCCGTTCATCCGAGGCACATCACCGGGTGCGTGTTGCCATTGGAAACGGCCTCCGCTCTTCTGTGTGGGAAGACTTTGTCCAGAGATTCAGAATCCGACGAGTTGGGGAATTTTGTGCCACAGAGTGCAACTGCAGCCTGCTGAACATAGACGGGAAgGTGGGGGCGTGTGGCTTCAACAGTCGAATCTTGCCCAACTTTTACCCCATCAGACTGATCAGGGTACAGAAGAACGGAGATCTGTTCAGGGATTCACAGGGACTCTGTGTACCCTGTCTGCCTGgtGAGCCAGGTATGTTAGTGGGACGCATCAACCACACTGATCCATTGAGGAGATTTGATGGCTACGCTGATAAGGATTCCACCAATCAGAAAATAGCTCACAATGTCTTTAAGATGGGAGACTCTGCTTATGTCTCAGgcGACATGCTGGTGATGGATGAATACGGCTACTTGTATTTCAGGGACCGCAGCGGCGACACGTTTCGTTGGCGAGGGGAGAACGTTTCCACCACAGAGGTGGAGGGAGTCCTCAGCCGCCTGCTGGGACACACTGTTGTTGCCGTCTATGGAGCTTCTGTTCCAGGTGTGGAGGGGAAGGCCGGTATGGCAGCAGTAGCTCACACAGGAGGCCAGTTTGACCTCGATGCGTTCTTGATCGCTGTAAAGAAAGCCCTGCCTTCCTACGCACGCCCCGTCTTCCTGCGACTCATGCCATCTGTTGACACGACAGGTGAGAcagtcacacaaacacgcacgcacacacacacactcaaaaagtCACACATGAACTTTCCACTTTTGTCCTCAGGTACTTTCAAAATCCAGAAGACACGGCTGCAGAGGGAAGGATACAAGCCACAAGACACAAGTGAAAAGATTTATTTTCTGGACAGTCGTGCTGGGCGTTACGAGGCTGTTACTGATGAACTATATAATGCCATCATGGAGGGGAGAGTGTGTCTATGAGGCAGGATTAGACAGGACTGTATATTTCAAGGGG
>XM_039801535.1
GCAGCAGTTTATGTTGTAAGCTGCGCTGCGTTCAGCTTCAGTACGTGCTGCCGCTCATCACGTATTGTCCTTCTGACTTCTGACAACTCACGAGTAGGCTATAAGCGGCAGTGGCtcgactgaaaaaaaaagttaactttaCCGATAGCCTACATCTTTGGACTTGAGGAGGAGCTTTGCTGacgttttctttatttcttgctGAATCGAGATTGAAATTCTCGGACAGAGAGCACCATGCATGCGGTGAGTGGTGTCACAGCGTTCTTCGGTGTGTTTGGGGCTGTCACCCTGCTCTCCCTCCCCTGGCTCTGCAGCCTGTTGGCTGGGCTGGGGCTCTGCATGGTCTGGAGGGGATCCTGGAAGTTCATACATGTAGCTCTACGCACCATCAAAAGAGACCTAATGTGTCTGGTCGTCATCCTGCGTATAAGGTTTTCCATGTACCGCAATTTGCGAAATAGAAGCACCATCCCTGCCCTGTTTGGCCAGATGGTGAAACTGCACCCAGACAAAGCTGCTTTGATCTATGAGGCTACAGGAGAGgTTTGGAGTTTCAAGGAGCTGCAAAAGAGGAGCCATGCTGTGGCTCACTGGGCACTGACACAGGGATGGGCTGAGGGAGATGTGGTGGCCTTGTACATGGAAAGCCAGCCTTTAATGGTGGCTCTATGGTTGGGTCTGGCTATGGTCGGCGTAGAGGCTGCACTCATCAACCACAACCTTCGACAACACTCGTTACTGCACTGTGTCAGCGTGTCTGGTGCTCGGGCAATGGTTTTCGGGACAGAGATGGGAGAAGCGGTGTCAGAGGTGAGTGGCTCTCTGCAGCCCCACATGGTTTTGTTCAGCAGTGGTGTGCGGGACGATGAAGAGAAGCTCCGCAGCCTCCAGATTCAGAGCCTGGATGTCCTGCTGGACCGTTCGCCCAAACACCCACCACGCTACACACTCAGGAAGAACTTCAATGacagacTTTTCTACATCTACACTTCGGGTACAACAGGAATGCCGAAAGCAGCTGTGGTGGTGCACAGTCGGTATTATCGCATCGCCGCCTTTGGTTTCCACTCCTTTGGCTTGTGTCATGATGACATCATCTACAACTGTCTTCCCTTGTATCATTCTGCAGGTACCATCATGGGTGTCGGCCAGTGTCTGCTCTTTGGTTTGACTGTTGTAGTCAGAAGGAAGTTCTCAGCCAGTCGCTTCTGGGATGACTGTGTCAAACACAAGTGCACTGTAATTCAATACATAGGTGAGATTTGTCGTTACCTGTTGGCCCAGCCGGTCCGTTCATCCGAGGCACATCACCGGGTGCGTGTTGCCATTGGAAACGGCCTCCGCTCTTCTGTGTGGGAAGACTTTGTCCAGAGATTCAGAATCCGACGAGTTGGGGAATTTTGTGCCACAGAGTGCAACTGCAGCCTGCTGAACATAGACGGGAAgGTGGGGGCGTGTGGCTTCAACAGTCGAATCTTGCCCAACTTTTACCCCATCAGACTGATCAGGGTACAGAAGAACGGAGATCTGTTCAGGGATTCACAGGGACTCTGTGTACCCTGTCTGCCTGgtGAGCCAGGTATGTTAGTGGGACGCATCAACCACACTGATCCATTGAGGAGATTTGATGGCTACGCTGATAAGGATTCCACCAATCAGAAAATAGCTCACAATGTCTTTAAGATGGGAGACTCTGCTTATGTCTCAGgcGACATGCTGGTGATGGATGAATACGGCTACTTGTATTTCAGGGACCGCAGCGGCGACACGTTTCGTTGGCGAGGGGAGAACGTTTCCACCACAGAGGTGGAGGGAGTCCTCAGCCGCCTGCTGGGACACACTGTTGTTGCCGTCTATGGAGCTTCTGTTCCAGGTGTGGAGGGGAAGGCCGGTATGGCAGCAGTAGCTCACACAGGAGGCCAGTTTGACCTCGATGCGTTCTTGATCGCTGTAAAGAAAGCCCTGCCTTCCTACGCACGCCCCGTCTTCCTGCGACTCATGCCATCTGTTGACACGACAGGTACTTTCAAAATCCAGAAGACACGGCTGCAGAGGGAAGGATACAAGCCACAAGACACAAGTGAAAAGATTTATTTTCTGGACAGTCGTGCTGGGCGTTACGAGGCTGTTACTGATGAACTATATAATGCCATCATGGAGGGGAGAGTGTGTCTATGAGGCAGGATTAGACAGGACTGTATATTTCAAGGGG

Function

symbol description
slc27a1 Enables biotin transmembrane transporter activity; efflux transmembrane transporter activity; and long-chain fatty acid transporter activity. Involved in several processes, including carboxylic acid transmembrane transport; glycerophospholipid biosynthetic process; and lipid transport across blood-brain barrier. Located in membrane. Part of plasma membrane.

NR:

description
PREDICTED: long-chain fatty acid transport protein 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801526.1 True 2293 mRNA 0.52 13 18743569 18751991
XM_039801535.1 False 2215 mRNA 0.52 14 18743569 18751991

Neighbor

gene id symbol gene type direction distance location
LOC120563090 NA coding downstream 7048 18727400 ~ 18736521 (-)
LOC120563085 colgalt1,LOC102311502,LOC100712117,LOC103362237 coding downstream 16819 18712936 ~ 18726750 (-)
LOC120567388 LOC100712387,LOC102193985,LOC102310568,LOC101487876 coding downstream 32849 18705404 ~ 18710720 (-)
LOC120567401 nxnl1,LOC103362235,LOC101486728 coding downstream 37815 18702438 ~ 18705754 (-)
LOC120557593 LOC103362234 coding downstream 41360 18675408 ~ 18702209 (-)
LOC120559658 LOC104952753 coding upstream 668 18752659 ~ 18766884 (-)
LOC120562921 LOC104952754,LOC103372004 coding upstream 31934 18783925 ~ 18787858 (-)
LOC120560204 pbx4,LOC104952752,LOC103392870,LOC102788435 coding upstream 38625 18790616 ~ 18804634 (-)
gde1 gde1,LOC100700294,LOC102797450 coding upstream 233112 18985103 ~ 18990486 (-)
xpnpep1 xpnpep1 coding upstream 353256 19105247 ~ 19120656 (-)
G5894 NA non-coding downstream 54524 18630276 ~ 18689045 (-)
LOC120545674 NA non-coding downstream 79062 18663944 ~ 18664507 (-)
G5809 NA non-coding downstream 156033 18584673 ~ 18587536 (-)
G5801 NA non-coding downstream 168238 18575017 ~ 18575331 (-)
G5800 NA non-coding downstream 169315 18574050 ~ 18574254 (-)
G5921 LOC103372008 non-coding upstream 84286 18836277 ~ 18857539 (-)
G5926 LOC103372008 non-coding upstream 122884 18874875 ~ 18875738 (-)
G5935 NA non-coding upstream 178265 18930256 ~ 18930500 (-)
G5954 NA non-coding upstream 204416 18956407 ~ 18956631 (-)
G5970 NA non-coding upstream 209221 18961212 ~ 18961997 (-)
LOC120556582 NA other downstream 861810 17879868 ~ 17881759 (-)
LOC120556682 NA other downstream 895532 17835904 ~ 17848037 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other downstream 907808 17817507 ~ 17835761 (-)
LOC120560175 NA other downstream 1029671 17710639 ~ 17713898 (-)
LOC120569099 NA other downstream 1322471 17412053 ~ 17421098 (-)
G5930 LOC102307335,LOC101466373 other upstream 132977 18884968 ~ 18890220 (-)
mcrip2 mcrip2,LOC104963804 other upstream 219979 18971970 ~ 18982318 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other upstream 271225 19023216 ~ 19037081 (-)
G6084 NA other upstream 737597 19489588 ~ 19545927 (-)
LOC120569510 NA other upstream 1012902 19764893 ~ 19765387 (-)

Expression


Co-expression Network