LOC120560139 (gtdc1)


Basic Information

Item Value
gene id LOC120560139
gene name gtdc1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 254800 ~ 270538 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802332.1
tcttctgtctctctatctcttctgtctctcttctatctcttttctctatctctctctctctctatctcttgtGTTGCCAGATGGCGTCCCCCCCCTCCGTGCTATTGGTCGAGCCGCCCCCCCCCTCCGTGCTATTGGTCGAGCCGTTCTACGGGGGTTCTCACAAACAGCTGATGGACCTGCTGCAGGAGAACGTCTCCGGCGCCTCCGTCTGCTCGCTGCCCGCCAAGAAGTGGCCCTGGAGGGCCAGGACAGCAGCGCTGCTCTTCAGCCAGACCATCCCCCACTGCTCCACCTACAGGGTGGTGTTCTGCAGCTCGGTTCTGAACCTGTGTGAGCTGGTAGCTCTGCGACCGGACCTGGCCCGTCTGAAGAAGGTTCTGTATTTCCACGAGAACCAGCTGGTTTATCCGGTCCGTAAAGATCAGCAGAGAGACTTCCAGTATGGATACAACCAGATCCTGTcatgTAATCTAATAGTGATTGACCCGCGGCAGCAGCAGCCCGCGCCGGGACACGAAGACATCCCATCCATCACGGGGGGGCCCGAGGCTCGGCCAATCACTGAGGCCGCCGCGGGAGCGCCAGGTGTCCGGTTCTCTGCCTTTTGTGGCGTTTGA

Function

symbol description
gtdc1 Acts upstream of or within central nervous system development. Orthologous to human GTDC1 (glycosyltransferase like domain containing 1).

NR:

description
PREDICTED: glycosyltransferase-like domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802332.1 True 620 mRNA 0.59 3 254800 270538

Neighbor

gene id symbol gene type direction distance location
LOC120564633 NA coding downstream 145808 108587 ~ 108992 (-)
LOC120560232 LOC103372506 coding upstream 6942 277480 ~ 306630 (-)
LOC120560351 NA coding upstream 49144 319682 ~ 330033 (-)
tbce NA coding upstream 134319 404857 ~ 429984 (-)
LOC120566769 NA coding upstream 302226 572764 ~ 577992 (-)
tomm20b tomm20,LOC103375291,LOC103383373,LOC100703030,LOC108247505 coding upstream 1181461 1451999 ~ 1458867 (-)
G72 NA non-coding downstream 33365 124212 ~ 221435 (-)
G74 NA non-coding downstream 40469 158014 ~ 214331 (-)
LOC120567455 NA non-coding downstream 46008 208293 ~ 208792 (-)
G78 NA non-coding downstream 71976 164668 ~ 182824 (-)
G79 NA non-coding downstream 105590 148591 ~ 149210 (-)
G114 NA non-coding upstream 3071 273609 ~ 275130 (-)
G80 NA non-coding upstream 6269 276807 ~ 328685 (-)
G81 NA non-coding upstream 23985 294523 ~ 294846 (-)
G68 NA non-coding upstream 45169 315707 ~ 317133 (-)
G131 NA non-coding upstream 98441 368979 ~ 369194 (-)
LOC120574930 LOC103372508,LOC108249786,LOC103470876,LOC102234899 other downstream 7827 233044 ~ 246973 (-)
G65 NA other downstream 22867 227526 ~ 231933 (-)
LOC120567035 NA other downstream 97562 154328 ~ 157238 (-)
G63 NA other downstream 100574 151749 ~ 154226 (-)
G413 NA other upstream 168119 438657 ~ 439448 (-)
G516 myhz1.2,LOC106938366,LOC104959125 other upstream 614811 885349 ~ 886343 (-)
G519 NA other upstream 695698 966236 ~ 974827 (-)
G565 LOC105912973,LOC105893694,LOC105900140,LOC105893089 other upstream 1089126 1359664 ~ 1360473 (-)
stab2 NA other upstream 1199879 1470417 ~ 1576495 (-)

Expression


Co-expression Network