XLOC_004608 (ppp1r3cb)


Basic Information

Item Value
gene id XLOC_004608
gene name ppp1r3cb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16281312 ~ 16288285 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009145
GTGTTCAGATTAGACTTGGATGTCTCAAAAGAAGCCGAGGACCTGATTAAAGGGTTCTGCAGATACTGAACCCCAGGCCAATGCCAAGTCCAATTATGCCTGTGGATGTGGCAATGAGAATCTGCCTGGCCCATTCGCCGCCTCTTCGCAGTTTCCTCAGTTCATATGAGGACTGCAAATCCAGGAACCTTGTCAACCAATACAAACCTCTGCGATCCTGCATCAGCTCCAAGACAGATGACGACACAGCCAACATAACATGGAAGAGTCCCGAGACCAAAGCTAAAAAGAAAGTGGTTTTTGCCGACTCCAAAGGCATGTCTCTGACGGCAGTGCATGTGTTCAAGGAATTCGAGGAAGACCTCATGTTAGACCTGCAGTTTGAATTATCAGATCTGGAGGATGCCATTGTTggcctgaaagcagagaaggagAAGAATTTCAGTTTAGGCTTCCCTCAACCTGCCGCCGACTATTTGGACTTCCGGAACCGTCTAAAGAAGAACCTGGTATGCTTGGAAAATTGTATAATTCAGGAGAGATCGGTCACTGGCACAGTTAAAGTGAGTAACGTAAGCTTCGAGAAGGTTGTCCATGTGCGAATAACTTTTGATTCATGGAAAAGCCACACTGACATTCCTTGTACGTACATGAATAATGTTTACGGTTGTGAGGACGTTGACACCTTCTCCTTTTCCATCGACCTTCCAAGTTTTGTGGCTCCA
>TCONS_00009146
GCAGTACGGCTGGACCGTGAAGGGGGCGTGCCGCAGCAAACCACTGTTCTTCAGCGGGGTTTTAGTTATGGTGCTGCTCGAAACGTTTTTAAATGAAGTTTAAGGGCACGTAGGAGAAATCAGTGCTTAATCAAACTATCGCAGAGCAAACCGTTTGAGACGTTTTGGAAACCAACCACCGGTTTCAATGAATTGCACCAGGGTTCTGCAGATACTGAACCCCAGGCCAATGCCAAGTCCAATTATGCCTGTGGATGTGGCAATGAGAATCTGCCTGGCCCATTCGCCGCCTCTTCGCAGTTTCCTCAGTTCATATGAGGACTGCAAATCCAGGAACCTTGTCAACCAATACAAACCTCTGCGATCCTGCATCAGCTCCAAGACAGATGACGACACAGCCAACATAACATGGAAGAGTCCCGAGACCAAAGCTAAAAAGAAAGTGGTTTTTGCCGACTCCAAAGGCATGTCTCTGACGGCAGTGCATGTGTTCAAGGAATTCGAGGAAGACCTCATGTTAGACCTGCAGTTTGAATTATCAGATCTGGAGGATGCCATTGTTggcctgaaagcagagaaggagAAGAATTTCAGTTTAGGCTTCCCTCAACCTGCCGCCGACTATTTGGACTTCCGGAACCGTCTAAAGAAGAACCTGGTATGCTTGGAAAATTGTATAATTCAGGAGAGATCGGTCACTGGCACAGTTAAAGTGAGTAACGTAAGCTTCGAGAAGGTTGTCCATGTGCGAATAACTTTTGATTCATGGAAAAGCCACACTGACATTCCTTGTACGTACATGAATAATGTTTACGGTTGTGAGGACGTTGACACCTTCTCCTTTTCCATCGACCTTCCAAGTTTTGTGGCTCCACATGAGCAGGTGGAGTTCTGCATATCCTACAAAACTCACGATATGACATACTGGGACAATAACGATGGGAAAAATTACAAGTTGGTACATACGGAAAACGACTCAAGTCAGGCAAGCGTCATACAAAACGCCACAACAGATTTCAAGGCTCAAGGGAAACGGCCAGATATGGAATTTGACCAGTTTGGGAGCCCGAGAACATCTAGTGGATTCTTCCCCGAGTGGCAAAGCTGGGGTCATATAGAGAACAACACCCCCTATTGGTGACAGTTAAACACATACTTACGAACTGGTCGTTGTAACAGGGACAAATGCAAGGAGAGTATTGGTTCCTTTCAGAATAGATTTCTGAAAAAGCCAGAATAGTCAAAATGATCAATGAAGTACTGAAAAGAACGTCTGTTTGGACATCAATTCAGTGTCGGTGTATGTTTTTAAGATAAACATTTCGCTTAAAGTAAAATGTTTGGGCTCTTAAATTATGCAAATCTGGGACTAACCATGTTAATCTTATGGCAGTTTTtcggaatttttaaaaaaattttgtagCACACTACATATGCTGTTTTGTAGAGCTGACATGGGGTAAACCAATAATTTGCATAACATAGTTGCCTTCCTTTGTGCTATTCTGTAATTAACTGTATTACAATGGCATAGTTTTTTGGATAGCTGTCTTTGTATAAAGTGAACAACTAGATTCTTCCTCAAAACTACTTTGTTACCCTGAAGGGTAACGACTTTGCTGTTAAAACGATTGCTTCTGAAATGTGACTGGATGTTAATACGTAATCATTTAAATCATCCTTAAagctatagttcacccaaaaatgaatgttCTGTCATTTGCAGTAAACTTCATTCCAAACCTGCCCTGCTGACGTTCATAGTAGGAATAAAGCAGTACTCATATAATTGCTTTTGTGCTACGCAGAAGAACAATAAGCTGTAGATGtttaaaacaacatgaaagctagtaaataataattacatttttaattatgggtgaaccgtccctttaaCAGAAGATGAATCAGCACAGCATACTGTATGTAATGCTCAGATTATGGAAGTGGAATAATCTGGAACAATATGAGATTGCTTCATATTGAAGTTTATGTGTCTCATTTGATAGCACCAGTTTATTAGTCACTTTCTAATGAATGCACTAATCATGAGGGAGTCCATGAGATTATGATGCCCGTTAAGTGCTAAATCCCTGCTGTTGCGTTTTCCTATGTTTGTTCTACTTTTTTAAAACTGCAGTTTCGATGTATTTTACACTTCTTTCCTACGACATTTTTGCTGCTATGCTCTTGTGTGTGCTGCATTGTGATTTATGACCCATGGTGTGTGAAAACTCTCCAGTGTTATTTGGAGATAGAAGATGAGGAACGTTGGACGAAACTTGAAGGAGGCCCTAGAATGTGAGGAAGAATGGCTAAAGACGACGACCATCTTGAATGAGGTTCTTGTGTTTTCATGACTGTTTTGTCCCCTTTTTGCTGCAATAGAAACACAGGTTGATGCCTTGCACGATGGAGATTGTGGACTGTGGTGAACTGTGAGCTGCTGTAACTGCGGAGAGGGATTATGCAGGTTGAATGTAAACAGAGGCCTACGCGAGACAGTGTATGCCTACgtatttttttctactgcaaaGAAAGATGTTTGTACGAAAGAATGCTGTACTTTACTCTTGTGTTCCTTTTAGAAATAAAACCTAATGTTTCTACGAGGA
>TCONS_00009147
GTGCCGCAGCAAACCACTGTTCTTCAGCGGGGTTTTAGTTATGGTGCTGCTCGAAACGTTTTTAAATGAAGTTTAAGGGCACGTAGGAGAAATCAGTGCTTAATCAAACTATCGCAGAGCAAACCGTTTGAGACGTTTTGGAAACCAACCACCGGTTTCAATGAATTGCACCAGTGTTTTTTCTCTATTGTCTTCATCACAGGGTTCTGCAGATACTGAACCCCAGGCCAATGCCAAGTCCAATTATGCCTGTGGATGTGGCAATGAGAATCTGCCTGGCCCATTCGCCGCCTCTTCGCAGTTTCCTCAGTTCATATGAGGACTGCAAATCCAGGAACCTTGTCAACCAATACAAACCTCTGCGATCCTGCATCAGCTCCAAGACAGATGACGACACAGCCAACATAACATGGAAGAGTCCCGAGACCAAAGCTAAAAAGAAAGTGGTTTTTGCCGACTCCAAAGGCATGTCTCTGACGGCAGTGCATGTGTTCAAGGAATTCGAGGAAGACCTCATGTTAGACCTGCAGTTTGAATTATCAGATCTGGAGGATGCCATTGTTggcctgaaagcagagaaggagAAGAATTTCAGTTTAGGCTTCCCTCAACCTGCCGCCGACTATTTGGACTTCCGGAACCGTCTAAAGAAGAACCTGGTATGCTTGGAAAATTGTATAATTCAGGAGAGATCGGTCACTGGCACAGTTAAAGTGAGTAACGTAAGCTTCGAGAAGGTTGTCCATGTGCGAATAACTT

Function

symbol description
ppp1r3cb Predicted to enable glycogen binding activity and protein phosphatase 1 binding activity. Predicted to be involved in glycogen biosynthetic process and regulation of glycogen biosynthetic process. Predicted to act upstream of or within glycogen metabolic process. Predicted to be part of protein phosphatase type 1 complex. Orthologous to human PPP1R3C (protein phosphatase 1 regulatory subunit 3C).

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0005977 glycogen metabolic process biological_process
GO:0005978 glycogen biosynthetic process biological_process
GO:0005979 regulation of glycogen biosynthetic process biological_process
GO:0000164 protein phosphatase type 1 complex cellular_component
GO:0008157 protein phosphatase 1 binding molecular_function
GO:2001069 glycogen binding molecular_function
GO:0019903 protein phosphatase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1733 Predicted to enable glycogen binding activity and protein phosphatase 1 binding activity. Predicted to be involved in glycogen biosynthetic process and regulation of glycogen biosynthetic process. Predicted to act upstream of or within glycogen metabolic process. Predicted to be part of protein phosphatase type 1 complex. Orthologous to human PPP1R3C (protein phosphatase 1 regulatory subunit 3C).

Ensembl:

ensembl_id ENSDARG00000014554

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009145 False 725 mRNA 0.46 2 16281312 16286544
TCONS_00009146 False 2615 mRNA 0.41 2 16284086 16288285
TCONS_00009147 True 759 mRNA 0.46 2 16284113 16286428

Neighbor

gene id symbol gene type direction distance location
XLOC_004607 mpp3b coding upstream 5036 16233077 ~ 16276276 (+)
XLOC_004606 lrp2b coding upstream 51762 16132612 ~ 16229550 (+)
XLOC_004605 muc13b coding upstream 158798 16106459 ~ 16122514 (+)
XLOC_004604 znf281b coding upstream 178890 16087077 ~ 16102422 (+)
XLOC_004603 NA coding upstream 332761 15948036 ~ 15948551 (+)
XLOC_004609 ankrd1b coding downstream 152423 16440708 ~ 16446373 (+)
XLOC_004610 kif20bb coding downstream 164290 16452575 ~ 16479291 (+)
XLOC_004611 NA coding downstream 198680 16486965 ~ 16487567 (+)
XLOC_004612 NA coding downstream 201913 16490198 ~ 16491806 (+)
XLOC_004613 NA coding downstream 279569 16567854 ~ 16570044 (+)
XLOC_004602 NA non-coding upstream 355515 15904124 ~ 15925797 (+)
XLOC_004597 CR749751.1 non-coding upstream 899498 15381694 ~ 15381814 (+)
XLOC_004593 NA non-coding upstream 1165881 15111405 ~ 15115431 (+)
XLOC_004590 NA non-coding upstream 1465367 14815600 ~ 14815945 (+)
XLOC_004614 NA non-coding downstream 295088 16583373 ~ 16585054 (+)
XLOC_004615 NA non-coding downstream 454110 16742395 ~ 16874703 (+)

Expression


Co-expression Network