LOC120560609 (casp6)


Basic Information

Item Value
gene id LOC120560609
gene name casp6
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 30401440 ~ 30407692 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803281.1
AGATTCAGAAGGGGAGGAGCTACTTCCTGGCTCATCGTTCTTGCTTTGACGAAGCAAATGCATTTTTCAGCAGTGTCAGTCGGAGTGAAGACCTGTGAACATGTCAAGCACGGCAGCAGACAGATGTGGAGGAAGTGTTGCTAAaggcaacacaacacaaacagacagtgCGGCATGCACTGAGAACCTAACGGAGACTGATTTCTTCATCAGGAGCTCTTTAGCTTTGGATCCTGCCGAGGAGTACAAGATGGACAACAAACAACGAGGCCTTGCACTCATCTTTAACCAGGAGCGCTTCTTCTGGCGCTTGGGGTTAAATGACAGGCATGGAACCAACGCTGACCGCTACAATCTGGAGAAAAGACTGAAGGAGCTAAACTTCGAAGTGAAAGCTTACGATAACTACAAACAGGAGGAAGTCTTAAATAAAATCAGTGAAGCCGCAGAAGCCAACCATTCAGATGCAGACTGCTTTTTGCTCGTCTTCCTGAGCCACGGCGAGAACGATCACGTTTACACCTACGATGGCAAGATCAGCATTCAGGATATCACCTCCCTGTTCAAAGGAGACAAGTGCAAGAGCCTCGTAGGAAAGCCAAAGATCTTTATATTACAGGCATGCCGCGGAGACAAGCACGACAATCCAGTGACTGCCTGTGATGTCGTGGACAGTGAGCTGAAGACGAATGAGGTGGTGGTTGACGCTAGCGCCGTACACACCCTGCCTGCTGGGGCTGATTTCATCATGTGCTACTCTGTGGCTGAAGGGTACTATTCCCACCGGGAGACCATCAACGGCTCCTGGTATGTCCAGGATCTGTGTCAGCTGCTTCAAACGTATGGGGACTCCCTTGAGTTCACAGAATTACTGACGCTGGTCAACAGGAAAGTGTCGATGAGGAGTGTTGGGAACAGTTACGACTTGAACGCCATTGGGAAGAAGCAAGTACCTTGCTTTGCTTCAATGCTCACCAAGAAACTCTACCTCCGACCAAAAAAGTAACAGTTTATAAAAACTCAGTCATAAAATGAGCTGGTTTTATACCTGGGAAACAGGGGCTGGGAGATTTTCAAGaattttgctgtttttctttagTCCTCCACTCTATTTTTGCTCAAACATTATTCACATATGCATTGAATCATCAGTCAAATGGCAGCCGTAGTATTTTCAGTGAAATCAGTGGTTATAAAATAACAGGAACAACTTGTATTCACgttttatctgtgttttaagctCCAAACGTCTCCTTCCaagcagcgctgcctggaaggcactaggattaggcaatggttatggttaggttagggttaaaaCACAACGCCCGGGATGGGCGCTGcgaggggcacgggcacaaggggactacttaaggttagggttagttgCCTTGAAGttaacggtcgcagcgctgccttgaagtcgattaggcaatggttagggttaggtgccttgaagtcgattaggcaatggttagggttaggtgccttgaagtcaatggtcgcagcgctgcctggaaggagacgttgggggcttaaaacaccatcgagctgtATTCACATGCTGACTATTTCTGGCCTCAGGCCATCACTCCACTTCCGAAACCTAATGCCATGCATTTGTCATGTAAAGTTTCTTCTGGAGAAACCAGATTTCTTGGCTGGGTTTAACCCTGACCTGGTTTATAAAGGGCTTTCAGtgttttgcatttgcatgacaGAGAATCAAAAGAGGGAAAGTATCTGTAGAGGGTGAAGGAGAAATCTGATATTTGATTGTCTGTAAAAATCTATTAATTCATTGATCAACTGTAAACTATGCTGCCTCTATTTCTCACAACTCAATCTTTTTCATTTCCAATACTAATTTGCCCCCCAAAGTCCAATGTAAGGGTGATTTTATATTCCTGAATATAACTAATTTACAAAACTATAATGGGATTTCCTTGCTTATATATGACAGAAATATGTTGGCTCAAATCAAGGGTAGTTTCTGAGACCATGATGTATGGTCTTGTTGTATTCGAGTGcattatgttttaaggtattCCTATTAATTTGTCCAACCATTGTAAATCAGTAGACATTTTGCACTTTCACGAAATTGCTTTTAAACTTCAGGAATATTATGGGCCACGTTGTGGTGTTCCTGTCTTagcattttgtcacattttgctTGCTTCTTTAAACTACTGTAGCACCACGCAAATGTTGCCTTATCTGAAAGCTTTCCTCAGACTCTGAGGATGCTGGAAATGTAAGATGAGACATGTGACATAACAGCTTGACAGCCAGGTCATTCATGATTTCGGTCACATCAGGGTTTTTATACATTATTATCTCTCTATATGCACCTAGTGATATCTCTCATCTCCAGGTACCACATAAACACGCTGTTTGTCTTCAAACTCATTCCATCAAAAAGGGAATTCATGTTTGTGCAGTTCTTTGTGTTGTAGCAGTTTACAGTACTACATTTAATAATGCTTATTTGCACCCAACATGGCAACAAATACCTGTGTGGAAAGAACCTCAGGGAGGAGGCTGTACTGTGGACCTGTAAAACATGATCTATGACTCAGGAAAAACAAAGTTACCAGCATACATTGATCCTGTATTTTTGTGGTCTTACAGTGGCTGTATAATAAAATCGGTGGGACATTTTAGTTGCTCCCGTTACAGTGAT

Function

symbol description
casp6 Enables cysteine-type endopeptidase activity involved in execution phase of apoptosis and identical protein binding activity. Involved in cellular response to staurosporine; epithelial cell differentiation; and proteolysis. Located in cytosol and nucleoplasm. Implicated in ovarian carcinoma. Biomarker of Alzheimer's disease; ductal carcinoma in situ; lung non-small cell carcinoma; and prostatic hypertrophy.

NR:

description
PREDICTED: caspase-6

GO: NA

KEGG:

id description
K04396 CASP6; caspase 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803281.1 True 2686 mRNA 0.44 8 30401440 30407692

Neighbor

gene id symbol gene type direction distance location
lef1 lef1 coding downstream 80477 30278527 ~ 30320963 (-)
papss1 papss1 coding downstream 149812 30206501 ~ 30251628 (-)
dkk2 dkk2 coding downstream 235245 30152144 ~ 30166195 (-)
tbck tbck coding downstream 300312 30043939 ~ 30101128 (-)
LOC120569234 LOC102312368,LOC100706304,LOC102797228,LOC101468181 coding downstream 357776 30028109 ~ 30043664 (-)
pla2g12a pla2g12a coding upstream 10803 30418495 ~ 30424022 (-)
dnajb14 dnajb14 coding upstream 16914 30424606 ~ 30439055 (-)
LOC120569182 ttc39b,LOC103361331,LOC103383857 coding upstream 32690 30440382 ~ 30447099 (-)
psip1a psip1 coding upstream 46658 30454350 ~ 30464962 (-)
spag5 NA coding upstream 525057 30932749 ~ 30950945 (-)
G8843 NA non-coding downstream 46788 30354438 ~ 30354652 (-)
G8834 hadh,LOC103384097 non-coding downstream 128090 30271464 ~ 30273350 (-)
G8790 NA non-coding downstream 393457 30006394 ~ 30007983 (-)
G8707 NA non-coding downstream 780956 29620019 ~ 29620484 (-)
G8704 NA non-coding downstream 786040 29615125 ~ 29615400 (-)
G8880 NA non-coding upstream 42639 30450331 ~ 30450686 (-)
G8890 NA non-coding upstream 291445 30699137 ~ 30699343 (-)
G8952 NA non-coding upstream 401679 30809371 ~ 30899158 (-)
G9081 NA non-coding upstream 705924 31113616 ~ 31120342 (-)
G9104 NA non-coding upstream 847394 31255086 ~ 31255294 (-)
G8701 NA other downstream 807817 29589308 ~ 29593623 (-)
rnf24 rnf24,LOC102778784 other downstream 1061593 29306021 ~ 29339847 (-)
lonrf1l lonrf1,LOC103360493,LOC102797331 other downstream 3106529 27281798 ~ 27294911 (-)
smim14 smim14 other downstream 3822625 26567067 ~ 26578815 (-)
LOC120566984 NA other downstream 3865704 26533833 ~ 26535736 (-)
bnc2 bnc2 other upstream 168180 30575872 ~ 30744878 (-)
G8975 NA other upstream 563696 30971388 ~ 30974612 (-)
znf827 znf827,LOC102789810 other upstream 1526945 31934637 ~ 32006542 (-)
LOC120567365 NA other upstream 1814265 32221957 ~ 32226423 (-)
lrba NA other upstream 2177032 32584724 ~ 32781154 (-)

Expression


Co-expression Network