LOC120560668 (LOC103354873)


Basic Information

Item Value
gene id LOC120560668
gene name LOC103354873
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 26007901 ~ 26009225 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803402.1
GCGAGAAGGCAGCTGAACCAAGAAAAGGAAAAGTAAAGGAAAGAAGGAACTGAGTAGAAAAATTCAGTACTAGAAAAAGCTCTTTTACTTTTCAATTCAGACTTCATCAGACGGCTTTCTGAAAGCCAATCTTTAGTGTTAATTGTTGCAGAATTTTGTAAAAGGCAAAAATGATGATCAGCAGAGTCCTTGTCGCCTCTATTGTGGTGTTCCTGGCCTTCCTGGCCGTCAGTGAAGCGATGAGTCTGAGAAGCCTGGGAGTGGAGCTGCACTGCCGCTGCATCCAGACAGAGAGCCAACCCATCGGCCGCCACATCGAGAAGGTGGAATTGATTCCTGCCAACTCCCATTGCGACGAGACTGAGATCATTGCCACTCTGAAAAAGACAGGCAAAGAGGTTTGCCTGGACCCTGAAGCTCCCTGGGTGAAGAGAGTGATTAATAAGATCCTGTCCAACAGAAGACGCTGAACAGACCAGGAGAGATGTGCTTCATGAGTCTGAGCCGTTTAAAGACAAATGAAAAGTACCAGAAAGTATTTGTTGTCATCACACTCATCTCATTTTAATACCAGAAGATTGCCAAATTTTCTGATTTTCAAAATGATAATTTACCCATTAAGGTTATGTTTGTATCAAACGTGTTATTTATTAACaagtatgtgtttatttgtaatgtcacttgtgtgtgttgtagccaATTACTCTCTGATGTCACTTGGCTGCTGTATTGCTATCTTGTCTAAAACTTAGACAAGTTAACAAGAGTTCAATATATTTATTGATGTATTTATGGAATGTAAATGTATCTGGATTCAGTTGTGTGTGACAACCTATTTATGAATTAAAAAAGTTTACTTGAAATTGAA

Function

NR:

description
PREDICTED: interleukin-8-like

GO:

id name namespace
GO:0042119 neutrophil activation biological_process
GO:0006955 immune response biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0005576 extracellular region cellular_component
GO:0005153 interleukin-8 receptor binding molecular_function
GO:0008009 chemokine activity molecular_function

KEGG:

id description
K10029 PPBP, CXCL7; platelet basic protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803402.1 True 868 mRNA 0.40 4 26007901 26009225

Neighbor

gene id symbol gene type direction distance location
LOC120560669 LOC103354873 coding downstream 4630 26001504 ~ 26003271 (-)
camk2d2 camk2d,LOC100698346,LOC102204310,LOC106958643,LOC103469495,LOC103354871,LOC108246882,LOC107382167,LOC106904815,LOC101466566,LOC103383722,LOC102794776 coding downstream 7875 25961727 ~ 26000026 (-)
ppp2r2ca LOC103383728,LOC103353185,LOC100709897,LOC104957013,LOC101464647 coding downstream 178668 25821054 ~ 25829233 (-)
crmp1 LOC103353182,LOC102796940,LOC104957015,LOC102288736 coding downstream 199295 25797199 ~ 25808606 (-)
LOC120568214 NA coding downstream 426223 25576779 ~ 25581678 (-)
polr1e polr1e coding upstream 20405 26029630 ~ 26034422 (-)
pax5 pax5 coding upstream 144265 26153490 ~ 26236532 (-)
trnap-agg NA coding upstream 403067 26412292 ~ 26412363 (-)
LOC120557121 NA coding upstream 415866 26425091 ~ 26435787 (-)
rfc1 rfc1 coding upstream 510253 26519478 ~ 26533118 (-)
G7647 LOC101465801,LOC104957103,LOC100710165,LOC102212444,LOC102796636,LOC102290474 non-coding downstream 169139 25837977 ~ 25838762 (-)
G7646 LOC103353189 non-coding downstream 170087 25835627 ~ 25837814 (-)
G7602 LOC106928664,LOC103383731,LOC101487977,LOC104957016,LOC108241553,LOC102797720,LOC102209862,LOC102220538 non-coding downstream 225300 25782169 ~ 25782601 (-)
G7601 NA non-coding downstream 228957 25778657 ~ 25778944 (-)
G7600 LOC104957016,LOC106903860,LOC103469346,LOC102220538 non-coding downstream 249636 25757405 ~ 25758265 (-)
G7726 NA non-coding upstream 7235 26016460 ~ 26018100 (-)
G7730 NA non-coding upstream 11983 26021208 ~ 26110065 (-)
G7737 LOC103354866 non-coding upstream 29066 26038291 ~ 26039107 (-)
G7765 NA non-coding upstream 126675 26135900 ~ 26136838 (-)
LOC120559960 NA non-coding upstream 179536 26188761 ~ 26189886 (-)
G7603 LOC103353181 other downstream 219672 25783944 ~ 25788229 (-)
G7589 NA other downstream 308344 25698261 ~ 25699557 (-)
LOC120543531 pde6h,LOC101074909,LOC104944980,LOC103354149,LOC107382209,LOC103383788,LOC101158417,LOC106533555 other downstream 1248283 24755932 ~ 24759618 (-)
si:ch211-243a20.3 si:ch211-243a20.3,LOC107676841,LOC107712233,LOC105901553 other downstream 1338604 24665385 ~ 24669297 (-)
G7323 NA other downstream 1472585 24532236 ~ 24535316 (-)
polq LOC104947247,LOC104947243,LOC106593755 other upstream 66172 26075397 ~ 26094244 (-)
adamtsl7 NA other upstream 102789 26112014 ~ 26121649 (-)
LOC120566984 NA other upstream 524608 26533833 ~ 26535736 (-)
smim14 smim14 other upstream 557842 26567067 ~ 26578815 (-)
lonrf1l lonrf1,LOC103360493,LOC102797331 other upstream 1272573 27281798 ~ 27294911 (-)

Expression


Co-expression Network