smcr8b


Basic Information

Item Value
gene id smcr8b
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 15040847 ~ 15052712 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803813.1
CCTCAGCCTGGTTTTACGTGAAGCGCCGCTTCAGTGTAGACCGGCACCGGCACGTCCCCGGTCCCCGGCGTCTGTCACATGGCTAAATATGGTTGCAGAGAGTTCAGTTTGCCGGTCAAATACGTGACACCGAAACGCAAGTAGTTTTAGCCTGAACGTTAGCTCTCCAATTACTAGAAAGAGGAACACAAATCCcggggaaaaaaaaggtaccTAACCTTGTGACTGCCGCCCGCAGGAAAGTTTCGCTTCTCCATTAAGTTTTCTCTGGCGTCTGTTCCTGAAAACGCCGCTTGTTTTCGAGACTGTCGTGAAGCGCACAGGATACTCCTTGAAGTTGTAATTTAGTACAGCTTTCGCTTTGTGGTTGAAAGACAACTACGCAACAAGTATTTAACTAtcggctgcagctgctgctgttgttgttgtggcgTCCCGTGTGAACAGCTGACTCACCGAGTGAAGGCCGGGTCGCACCGGGACACAGATCTATGTTTGATCCCCAGGTTCAGCCCCGCTGAGTAGATCCTCCATGGGTCCACCGCTCACGGTCTGAAGATGATCGGGTCACCGGACCTGCTGGCCTTCACCGCCACTGAGGGTTTTGGGGAACGAGAGGAGGACGAGGGTCTACCTGAAGAGCTCTCTGTCCCCCTTTCGCCTCCATCCAACCCCTGGACCACCTCAGCCCAGTTTCACAGAGACTTTATACTGGTGGCGGAATTTTCAGAGcagGTGGGGCCCAAGCCTGTGCTGACGATACCGGACGACCCCAGAGTCATCGGATCATTTGACCTCAACCACTTCTCTGTTCGCATCATGTCTGTGGACTACCAGGCGTCCGGCCCCAGCAACACTCCTCCTGCGTCCCCCGGTCCCCGCCTCAACTTCAACGAGGACTCCAAAGTGGTTCTGGGAGATTCGGCGGAGGACGCGTTTGCATACGTTCACCACATGACCCTGTATGACCTGGAGGCTCGGGGCATGGTGCGTCCCTTCTGCATGGCGTACGTGTGTTCGGACCAGAAGAAGCTGATGGAGAACTTCTCCGAGCTGTCGACGTGCTTCTCTCAGGCCTCCGACAGCCTCAAGACGGGAAACAGACAAGCATTTTCTATGGAGCTGCAGAGAAAATTACAGGAGCTTGCGTACAGACGCTTGACTCTGCTACAGGAGACTGAACTTCAGAGGCCGACGAATGGCTTCACAGAGGAGGGAGAAGCAGCAGGTGAGCTTGAAGCTGTAGAGCGTTCAATCTTAATTCATAGAGACCTCCTCCGCCAGGTCACTTCCTACCCAAACAGGAAGCTGAAACAGCCTGACTTCCTGCCTTACGACCCAGCCGACTCCCTCGCTGATCCGACCGCCTTACTGCCTCCCGAGCCCTGCCCCCCCCTCTCCACCTCCTGCAGGTCTGAGCGCCGTCTGAAGCCTCTGCACGAGCTTTGCAACGCCTACTTCCTGTCTCTGACCAAGGAGCAGCTCGCTGACACAGAGCGCCGCCTGCGTGGCGACAGGAGTGCGTTGCGGACTGCTTGTGTCACGCGGTCGTTGTCCAGGAGGCTCACGCTCATCAACTTCCTGTTTGAGCTGTGGAGCCCAGAGGacggagatgaggaggagagagagagcgccgaGGTGGAGCTGCAGAGGACGGCAGGAAGTAAGAGCGGCCTGGAGATGTTCCAGTCAGAACCAATGAGCATGGAGTCCTTCTTCTCCTGCGTGGAGGAGATTCCCATCAAACTGGAGGCAGGAGAAGCTGGGACAGTGACCCCTGACCCCAACGTTGCCCCGGATATGACAGGAAGCATCAGCAGCAGCGACAGCATTGAAGTGCTCGGGACTGAGAAGTCTTATCGGACGCAGCATGGCGTCGCTGGATCTGACAGCAGAGAAACGCCCGTTGGGATGATGGACACCTCTTGCAGGCGAGCCACAGGAGATTCATGCGCCAGGCACGCGAGAGCGTACGCCAGACGAGCCAACAGTGAGGACAGCATCGAGGTACTGAGTACCACCGAGTCCATCTTTCCTGACGACCTCACCGCCATCACAGAGGAAGAAGCAGAGCACCAACTGCTGAGTAACGGCGTCGAGAATGGGAAGGTGATACTGACAGAGAGTGAATCTGACGATGCCCTCAAGGAGAGGAAGACATCGAATGCAGCTACTTCAGTAAATCAGGATGAAAACAAAGAGCCTGTTGGGGAAGATTGCAGTCTCGTTGACAGAGAAGAAACCTTAAAGCAAACAGCTGTTAATGGTGAGATTAAAATCAAAGAGGAGCAGATCGTTGAATGTTTGAAGAGCAGTCAAGTCCATGATGACAACAGTCCTGAGAAGACGTCCAAACTACTGCGAGTTGAAGAAGCAGTGGAGTCGACACCTCAGTGGTCTGAAGTCCGTCAGAACGTCCAGCCGGTGCCCGAGCTTCACGTCCACTTGGCCCCTCCTGTTGCCGTGGCGGAGGCTGACCGCTGGTCTCCGCCCTGCGGTCCTCTCCGGCTGCTGAGCGTCGACGAGGCGTCCGACTGCACCAGCTTCACCGGCTCCTCGGACCCGCCTTCTCCCACCCAAAATGTCCACAGCAACAGCCGCTCGAAACCGAGGAGGAGACGGAAGGCTGGACTCAGAGCCCTCCGGTTCCTCAAGCAGAACTCCTTCTCCCAGCATGCCGTGTTTTGTCTCCTGAGCGGCCGGCCGCTGGTCGTCATCGGAGGAGACGAGAGTTTGGTCACAAAACTGCTGGACGCTCTGAGTCTCTTCCTGCCTTCCCCTGGTCCTGATGGAAACGCTGTGATGCCGTGTTTGACCACGCCGCTCCAGCTGACCGACCTGCTCACCTGGAGACTGATAGGAATACACCGATCGTCCTCCAGCTCCTCAGCCAGCATTCTTCACTCTCTGACTCGCTACAGTCGTTATTTGGCCCTGTTGGATATGGACCAGAAGACGCTGCGCTGTCCTTCATACTCCGGCTCGCTCATCGGCAGACTGGCTAACCCTTACGCCCGCATTAGCAGAGGCATCACCTACCTGCTGCACCTGGAGAGCTGCCTGACTGCACTGGCCAACCAGGCTCTGCTGTACACGTTTAGTCCTGCGTTACGACGTCCAAACGCTGCTGGAGGCAACGATGGCACAGAAGGAGCGGACGTCCTGGTCACGCGAGGGTTCTGTAGCAGTGAGTGCGATTTGAGAGTGATGCATTTCCTGTGCGACCTCATCAAACAGCGCCACACAGGGCGTGGACCACCGGTTTTAAGATTCTCTTACAACTCAGTGCACCTGCACAGAAATACATATGCAGCCTAAACACTGGATGGACAAAAACAATTGACTAGTCATGAAGATAGTGTGTAATATTACCTACACCCACCAACACTGGTTTCTCATTAGGGTTTCTggtttgtcattgtttttgactgatgcaGACTGTTATCTGCCACTGAAGAATCACGcttatgtttttatttgcagtgttaaatgtgtgtttgcatgatTTTTACTCCATGATGTATCTCTGGATTACTGGACACATGCACTAGTGCCTCACTGGCACCAAAGACTTTTACAGGCTGGCAGCCTCAGcagatgattattattattatttgtttgtttttttttgttgttttttttttaaattggagtGTGTTACGGTTATAGGTATTACTGAATCGCATGTAATTTAAGAGAATTGAGCCACATATGAACACTGTTGAATCCAAACAACATCTGAGATGTTAAACCAGCATGCTATTGTTGCTTGTAGTTTGTGTTTCTCACTGATCCAGAACTACACAGAATGGTAATTATTTACTTTTATAAACTTCATTGAATGTAACTAGGTCTGTTGCTCTGTCAGTTTAGCTGCAGTATAGAAAGGAGGAGCCAATtccctaaaatgtcaaacttctcCTTGAAGTTGTCTGAAAAGAGGATCTTCTATCTCATTTTAAAAATCAACCTAGACTTTAAATGAGCTACACGTTACATTATGCTCGGCTCATATTATACTTGCcatatttgatatattttttaacattcacaATCTGAGCTGCAGAAATTGCAGTTGTACCACACAGACCACGTGTACTGCAGGTTTACAGTACACTTATTCCAGAACTTTCAACTGCATAACACGTTTTCATCAGGGTATGGAGTTCATTCACTTGTCATGGAGACGGCTCAGCTGTTGTGACAGCTTCATGCCAAGTGAGTTAACTCCACTGCTGAAGACATgacatgcagttgaaagctctggaaaaagAGAGTGTACCTTGAGTTGAGATTAGTTTTGTCAAATTTTTAAATGGATTCCTAAATGACCTGGAGCCAGTGTAATCAAACTAAACTGGAGTCATTGCAGCTAAAGGCTTGTTAAGTCTGGCAGCAGAGTTTTGAAGAAGGTAGAAGTAGTTTATTGAAAACAACCTAAAAGAAAATGGATTGTtgtaatataaataatgaacaTTATAGAACCTATTAATTAGACCTGGTGATGTGTTCACTCTAAATTGCAGCTGATGACAGAGCAACAGCCTCCTTCTGTTTAACGCTGTACTTTTACGTTTGTTATTTTATTGATGCAAATATGAGCCGAGTTTAGCGTGTGTTTATCAACTCTGGAAATAAAACCATATATTTTACA

Function

NR:

description
PREDICTED: Smith-Magenis syndrome chromosomal region candidate gene 8-B protein homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803813.1 True 4654 mRNA 0.50 6 15040847 15052712

Neighbor

gene id symbol gene type direction distance location
sh2d3a sh2d3a,LOC104966618 coding downstream 164665 14856366 ~ 14876182 (-)
LOC120562191 NA coding downstream 215951 14811342 ~ 14824896 (-)
LOC120567499 NA coding downstream 233531 14805750 ~ 14807316 (-)
palb2 NA coding downstream 329879 14698682 ~ 14710968 (-)
iqce NA coding downstream 376772 14647019 ~ 14664075 (-)
mief2 mief2,LOC102193621,LOC100697825 coding upstream 1739 15054451 ~ 15063940 (-)
alkbh5 alkbh5 coding upstream 12936 15065648 ~ 15070738 (-)
myo15ab myo15a,LOC102296698,LOC101486664 coding upstream 20070 15072782 ~ 15131877 (-)
zgc:77849 LOC104921184,LOC104966096,LOC102796782,LOC100695168,LOC101467750,LOC103369343 coding upstream 241159 15293871 ~ 15298838 (-)
LOC120561684 NA coding upstream 257986 15310698 ~ 15311959 (-)
G4669 NA non-coding downstream 11709 15028486 ~ 15029138 (-)
G4670 NA non-coding downstream 27658 15012925 ~ 15013189 (-)
G4663 NA non-coding downstream 41158 14999141 ~ 14999689 (-)
G4659 actbb,LOC102799139,LOC103383494,LOC102218394,LOC101168921,LOC108244554,LOC106519625 non-coding downstream 67656 14971380 ~ 14973191 (-)
G4658 NA non-coding downstream 70141 14969481 ~ 14970706 (-)
G4668 NA non-coding upstream 754 15053466 ~ 15054067 (-)
G4710 NA non-coding upstream 100832 15153544 ~ 15154146 (-)
G4713 NA non-coding upstream 147033 15199745 ~ 15263432 (-)
G4722 arpc1a,LOC102781765 non-coding upstream 225546 15278258 ~ 15321383 (-)
G4729 arpc1b,LOC100695691,LOC102293678,LOC101469153 non-coding upstream 275476 15328188 ~ 15329291 (-)
ubl5 ubl5 other downstream 136618 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 321745 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 998337 14018902 ~ 14042510 (-)
G4168 NA other downstream 1473581 13531753 ~ 13567266 (-)
LOC120560438 dnal4,LOC108261343,LOC106591471,LOC108436609,LOC108412416 other downstream 2000567 13037270 ~ 13040280 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other upstream 373832 15426544 ~ 15685639 (-)
LOC120558720 NA other upstream 1293006 16345718 ~ 16347922 (-)
LOC120569099 NA other upstream 2359341 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 2657927 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 2764795 17817507 ~ 17835761 (-)

Expression


Co-expression Network