LOC120561135 (lrat,LOC103357487,LOC103156491,LOC107094918)


Basic Information

Item Value
gene id LOC120561135
gene name lrat,LOC103357487,LOC103156491,LOC107094918
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 34527053 ~ 34529098 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804103.1
CTCTGCAGCACACTTGCAGCCATCATGTTTCTTTACCAAATACTCAACTTGTTCTATGTAGCTTTGCAAAAGGAGGAAGACTCCAAACATGACCTGTCCCTTTACAAGCGTGGTGATTTATTAGAAGTCCCCAGGACATTATTCACACATTTTGGTATCTACTTGGGAGACAATCGTGTGGCTCATCTCATCCCGGACATCCTTCCTGTGATTACTAAGAATAAATCTGCAATTGCCAAGATGGTAACAAATAACCGCCTGCTGCTGGGGGTTATCACTAAGGTTGCCAGCGTTAGAGTGGACTCTGTGGAAGATTTTGCGTATGGCTCAGAGATTCTGATCAACCACATGGACAAGGTGTGCAGCCAGCCTCCTTTGGACGGGGACGAGGTGGCCAGACGGGCTGAGAAACTCCAGGGCTCTGTCACCTACAGCTTACTGTGGTACAACTGTGAACACTATGTCATGTACTGCAGATATGGAATGGCCATCAGCTACCAGACGTACAAGTTCTGCACAGCTGTACGGAAGATTGTTTGCAGCAGGATGAGTGCCTATTTGACTGCACTGTGTGGTATAGGAACCATGCTGTATCTGGGCTGTGTGACATCACTGACAGTTTTACTGACCGTGCTCATCTCATTCACCATCTGGATGGCAGCCTAATGGACTCTGTTAAGACGGCTCACTAGAAAGACTAATTTAACACAACCTGGTGGAAGCTGAAATGAAGTCTTGTGGTTTAGCTGTGTGACTGAAGGCATTATGAAACAAAGGTGTTCACTTTAATAGAAATGTCAGTACTTTACGTTTTACcttctttaaagcaacactagagaacttttcccgcttcagtccccctacaggttggaagcagaattgtccattac

Function

symbol description
lrat Enables phosphatidylcholine-retinol O-acyltransferase activity. Involved in retinol metabolic process. Predicted to be located in multivesicular body; perinuclear region of cytoplasm; and rough endoplasmic reticulum. Implicated in Leber congenital amaurosis 14 and retinitis pigmentosa.

NR:

description
PREDICTED: lecithin retinol acyltransferase-like

GO: NA

KEGG:

id description
K00678 LRAT; phosphatidylcholine-retinol O-acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804103.1 True 890 mRNA 0.46 2 34527053 34529098

Neighbor

gene id symbol gene type direction distance location
npy2r NA coding downstream 5296 34516787 ~ 34521757 (-)
tlr3 NA coding downstream 115692 34405052 ~ 34411361 (-)
LOC120564947 LOC101485601,LOC102207182,LOC103357494,LOC100703355,LOC102781869,LOC102299071 coding downstream 126059 34390148 ~ 34400994 (-)
frg1 NA coding downstream 921921 33592642 ~ 33605132 (-)
asah1b asah1,LOC102779657 coding downstream 938012 33580853 ~ 33589041 (-)
LOC120557822 LOC104965748 coding upstream 27875 34556973 ~ 34560875 (-)
fam193a fam193a coding upstream 112106 34641204 ~ 34664220 (-)
slkb LOC103355271,LOC100692830,LOC107394353 coding upstream 412285 34941383 ~ 34974821 (-)
adra2c LOC104953545,LOC103354520,LOC103384182 coding upstream 687739 35216837 ~ 35220376 (-)
dok7b LOC103354519,LOC104946983,LOC107393269,LOC102790269 coding upstream 842919 35372017 ~ 35398518 (-)
G9747 NA non-coding downstream 48603 34474172 ~ 34478450 (-)
G9745 NA non-coding downstream 58870 34462958 ~ 34468183 (-)
G9732 NA non-coding downstream 161775 34365016 ~ 34365278 (-)
G9730 NA non-coding downstream 171727 34355008 ~ 34355326 (-)
G9695 NA non-coding downstream 197088 34329717 ~ 34329965 (-)
G9770 NA non-coding upstream 1245 34530343 ~ 34532004 (-)
G9836 arfip1 non-coding upstream 151443 34680541 ~ 34685004 (-)
G9838 NA non-coding upstream 176760 34705858 ~ 34706062 (-)
G9841 NA non-coding upstream 193882 34722980 ~ 34723718 (-)
G9842 NA non-coding upstream 194679 34723777 ~ 34726114 (-)
G9740 NA other downstream 69418 34452850 ~ 34457635 (-)
stox2a stox2,LOC100702551,LOC102293991,LOC101478850,LOC102775740 other downstream 1001538 33497102 ~ 33525515 (-)
tapt1b tapt1,LOC104934196,LOC102290950 other downstream 1162828 33306785 ~ 33364225 (-)
G9488 NA other downstream 1242973 33283078 ~ 33284080 (-)
G9418 fbxw7,LOC104948758 other downstream 1392133 33092460 ~ 33134920 (-)
G9997 NA other upstream 869542 35398640 ~ 35400474 (-)
rgs12b rgs12,LOC104946104 other upstream 875717 35404815 ~ 35451211 (-)
LOC120572869 NA other upstream 1055372 35584470 ~ 35586613 (-)
micall1a LOC100693188 other upstream 1414950 35944048 ~ 35969266 (-)
slc5a10 slc5a10,LOC102791530,LOC103460715 other upstream 1704109 36233207 ~ 36256880 (-)

Expression


Co-expression Network