LOC120561353 (LOC102083160)


Basic Information

Item Value
gene id LOC120561353
gene name LOC102083160
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 2362732 ~ 2394287 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804441.1
tcaggatccggtattggagactgcactactcagtatgacatgtTAAGGGATTTTCACACAGAGGTCGATTGTCGCACCTCgtgattcattttcaatgggggGTTAATACTGCCCAAACGCAGTGTTGCCCCCTGTGTGAAGAGACCTTGAGCTTACAAACATTAGCTAATGTTCTTAATCTGTAACGAATTAGAGTGTAGATTTTACAGTAAATACCTGGCAAAACAGTTGCCAATAAAGTCTTGTAAAAGTGCTGTTAATTACTGGAGAAAGaaattacagtatattacaaGATACAGGGTTTTGTTGTGTATAAATTACAGCAATTACTtgttaacagaaaaaaaactattaattgTAATGTTGTTTACAACATAATCTTGTATTGATGTGTTACATAGTGCAGCAATGAATGAAAATTAGCATAAAGATCATGCAAAAtctttaaacttttaaaatgccatagaAAATGAATACACAGCAGATGCAATCACATAAATTACAAATgttgtaacgttacctgaaaatcGTCACTGTTGTGAGTAGGTATCATTCAGCTGTGGCGCTCACTGATCGTGGTTTCCCTCTGCACCTGTAGCTAGATGATGCAAAATTGCACAAGACACGTAATGTTAGATTAGAGTCACATTTGGTCACCGATAAGGTTGTGTAACTTAGAACTCTGCAACCAACGTTAATGAATGTCTAGTATAACATGAGTTAATGTCTAATAATATCAGCGATGACTCAACCTATCTCTGCTAAGATCCATTCAAAAAACTTCCTACTGGAGCGAAAAGCCCATTGTCCAATGGCCGGTTATCCCGTTACGTTACGTAACTTAATTTTTGCAGAAGACCTGTAGAAGTTAAATGTCAGCCAAAATTACAAGTAATTCTTAAAGAGTCATACAAAGTGAAACGTTATGACACTATAATTTATACATTGTATTATGATTTATCTGTTAAATTGAGCAATATCTCAAGGGAGTCTGGAAAGTCACTGGACATACCATAATTTCTCAACAGCAGGCATTCAAAGCAGTTGGGTTTTGTTTTCAGGGTACCGGGACTAATGTTATGGACTTTCGGTCCCCttcaggttgtctcattggaacaaTAGCTTGCCAGCCTGTGTTAAAATATATCATAAAAACAGAGTATAATCATCAATGGAACAGTGTTAATCGGGAGCTACCGGCCACCTCACCTGCCATGCTGCAGAATGCATCACCATGGTTACCAGCTGCTGCAGAGTTTCAGGTGTGTTTCAGgtcACCTCACACCTCAGCCAGGCTCACAGCACACGGTCAACAACATTTAGGCAACTACAGACGACGTTTTAACTCCGACTTTCAGCGCCAAATCTCGACTCTCCCGATGGCGAACATGGCAGCAGAGATGGCCCGGAGGAAGGCCCGGGAGGAGGATGGCGCCGGTTGCCGGGACAACGCCGTCCCCTTCAACCAGCAGAgctttgagcagctgcagagcGAGTGTCTGCAGACCGGCTCACTGTTCTGTGACCCGATCTTCCCCGCAGGCTGGGACTCCCTGGGATACAACCAGCTGGGACGCTACTCCTCCAAAACCAAAGGCGTGGAGTGGAAACGCCCCACGGAGCTGTGTTCTAATCCTCAGTTTATTGTTGACGGAGCGAAGAGAACGGATATCTGTCAGGGAGAACTGGGCGACTGCTGGCTGCTAGCAGCTATCGCCTCTCTGACTCTGGACCCTCAGATTCTGAGCAGAGTGGTTCCTCCCGGACAGAGCTTCAGCTCGCAGTACGCCGGCATCTTCCACTTCCAGCTGTGGCAGTACGGGGAGTGGGTGGACGTTGTCGTGGACGACCGGCTGCCAACCAGAGACGGGAAGCTGCTGTTCGTCCACTCTGCAGAGGGAGACGAGTTCTGGAGCGCTCTGCTGGAGAAAGCCTACGCCAAGGTGAACAGCTCGTACGAGGCTCTGACCGGAGGTTCGAGCATCGAGGGTTTCGAGGATTTCACCGGAGGAATCGCAGAGAGCTATGACTTGATGAAAGCTCCGCCCTTCCTGTTCAACATCATGAGGAAGGCCCTGACACGCGGCTCACTGCTGGGCTGCTCCATCGACATCTCCAGCGCCTACGACACAGAGGCCATCACCAGTCAGAAGCTGGTGAAAGGACACGCCTACtccatcactgcagcagagcagGTTCATCACGTTGGTTCTGTGGTGGAGCTGCTGAGAATCAGAAACCCCTGGGGACAGGTGGAGTGGACCGGAGCCTGGAGCGATGAttcGAAGGAATGGGATGAAGTTGAGccggaggagaagaggaagctGGATCACTCAGCTGACGATGGAGAGTTCTGGATGTCCTACTCTGACTTTCTGATCAAGTTTTCCCGCCTGGACATCTGTAACCTGACCCCCGACACGCTGACCAGCGAGACCGTCGGCCGCTGGAGCTTCGCTGAGTTTGAGGGCACGTGGAGAGTCGGCTCCACCGCCGGAGGCTGCAGGAACTATCCTGctaccTTCTGCTCTGACCCGCAGTTCTTTATCCGTCTGGAGGATGTAGACGATGATCCGCACGACGGCGAGGATGGCTGCACCGTTCTGATTGGTCTGATGCAGAAAGACACTCGTAGGGAGAGACGCTTCGGACGAGACCTCAACACCATCGGGTTCGCCATCtacaagGTTCCTGATGAGTATAAGGGTGGCAGTGGCGTGCGTCTGGGCCCCGATGTCCTGCTGCGGGTGGCGCCAGTGGCTCGCAGTCAGAACTTCATCAACCTGAGGGAAGTAAGCGAGCGCTTCAAGCTGCCGCCTGGAGAGTACGCCATCATCCCCTCAACCTTCGAACCGCACCGAGCAGGAAGCTTCATCCTGCGGGTGTTCACTGAGAAACACGCCCACTCCAGTCCGATGGAGGAGGAGCTAACCGCTGACATCCAGGAGCTTCCTGTTGATGACTCTTTCCGTCGACAGGACTCGGAGATCTCGGCCTTCGAGCTGCAGCAGGTTCTGGACCGAGTCGTCTCTCAGAGGTCAGATGTGAAGACGGACGGCTTCAGTCTGGAGACTTGCCGCAGCATCATCAGCCTGCTGGACATGGACGGCAGCAGTAAACTGGGTCTACTTGAGTTTCACCATCTGTGGACGAAGATCCAGAAATACCTGGAGATCTTTAAGAGTCACGACTCGGACGCTTCTGGTACGATGAGCAGTCATGAGATGAGAGCTGCTTTGGCTGAAGCTGgttTCCAGGTGAACAGCTCTGTGATTCACGAGATCGTCAATCGATACGCAGACACAAGTTTTGCCATTGACTTTGACTGTTTCATCGGCTGCCTGATCCGACTGGAGCTGCTGTTCAAGATGTTCAGAACTCTGGACCAGAAGAAGGAGGGCAGGATCCAGCTAGACCTGCAGCAGTGGCTCTGTCTTGCCATCAACTGACCAAGGAGCATGCTGGGAGTTTTCACCTGCAGATTAAACATGATCAGGAACAGGAAGTctgtttaaatgtattaaatctGTGAAAACTTTATTCACctttaaataaaactgaatctgaacacta

Function

NR:

description
PREDICTED: calpain-2 catalytic subunit

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804441.1 True 3573 mRNA 0.49 22 2362732 2394287

Neighbor

gene id symbol gene type direction distance location
mrps28 mrps28 coding upstream 95109 2266855 ~ 2267623 (+)
mtif2 mtif2 coding upstream 115798 2228163 ~ 2246934 (+)
LOC120566049 NA coding upstream 142879 2211994 ~ 2219853 (+)
LOC120566037 NA coding upstream 157832 2202527 ~ 2204900 (+)
LOC120561330 NA coding upstream 161332 2197974 ~ 2201400 (+)
LOC120566159 NA coding downstream 178693 2572980 ~ 2584262 (+)
LOC120561808 srf,LOC103372093 coding downstream 464217 2858504 ~ 2881120 (+)
eif4a3 eif4a3 coding downstream 488636 2882923 ~ 2891005 (+)
tmem178 tmem178a,LOC102307988 coding downstream 543810 2938097 ~ 2977429 (+)
LOC120557776 NA coding downstream 715304 3109591 ~ 3128050 (+)
G725 NA non-coding upstream 893 2347168 ~ 2361839 (+)
G724 NA non-coding upstream 1399 2354934 ~ 2361333 (+)
G701 NA non-coding upstream 108398 2252046 ~ 2254334 (+)
G690 NA non-coding upstream 190262 2170948 ~ 2172470 (+)
G684 NA non-coding upstream 231948 2130256 ~ 2130784 (+)
G857 NA non-coding downstream 177005 2571292 ~ 2571500 (+)
G865 NA non-coding downstream 194434 2588721 ~ 2589076 (+)
LOC120566193 NA non-coding downstream 264115 2658402 ~ 2669755 (+)
G886 NA non-coding downstream 299940 2694227 ~ 2695390 (+)
G884 NA non-coding downstream 303242 2697529 ~ 2700077 (+)
G714 LOC103375176,LOC105920176,LOC100706186,LOC101468385 other upstream 16684 2307285 ~ 2346048 (+)
LOC120566000 NA other upstream 395477 1946145 ~ 1967255 (+)
G369 NA other upstream 442908 1582038 ~ 1919824 (+)
G363 LOC104946033,LOC104961227 other upstream 483186 1593822 ~ 1879546 (+)
LOC120566853 snrpb2,LOC102212107,LOC102301910,LOC101474810 other upstream 526272 1746571 ~ 1836460 (+)
LOC120566146 LOC107082675,LOC108251143,LOC103383281 other downstream 164589 2558876 ~ 2570454 (+)
G879 NA other downstream 231956 2626243 ~ 2700975 (+)
LOC120567073 sos1 other downstream 600742 2995029 ~ 3080190 (+)
LOC120567079 NA other downstream 674111 3068398 ~ 3071473 (+)
LOC120557752 LOC104935435,LOC108250455,LOC106524354,LOC101471560,LOC103371946,LOC102291612 other downstream 733802 3128089 ~ 3157138 (+)

Expression


Co-expression Network