LOC120561525 (xylt1,LOC102778305)


Basic Information

Item Value
gene id LOC120561525
gene name xylt1,LOC102778305
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 15816338 ~ 15899401 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804658.1
cctcctccttctcctcctcctccttcttgtcCTCCCTCTACTTCCACTGCTTCCTCCCGTCGCGCTGCGCAGAGCAGACGGTCCTCCAGCTCCGTTCAGCCCCGGTGCGAAGATGGTTGGCGGCTTGTGTGCACGCAGGTTGGCCCGCCGGTCGCGGTCCGCCTTGATAGCAGCCCTCACGGTGCTGCTCGTGCAGACGCTAATTGTGTGGAACTTCAGCAGCCTCGACTCCGGCGAAGACAGGGAAAACGGAGGCTCCAATGTGCGGGAGAAGAGGGACCGGTTCGCAGGCAACAAAGCCGCTGGCAGCGACTATTTCCAGCACGGGGTCCCGCGGCAGCGGCAGCATCTTCCTCCGCCTGGGAAGGGGACTTCTCGCCACATACAGCAGCCGGATGGATATTACTCGCACCGGCCAAAGGAGAAAAATAGAGTGGACAGCAACAACGAGAACTCTGTGCCAAAAGACTTTGAGAACATAGACAACAGTAACTTTGGTGCACGCTCACAGCCACACCGGCAGTCTGTAGGGGCCACCAGCagcaagcagcagcagcgggaGAATCTGCAGGACAAGGCCCACGCCCAGCAGCAGGCCTGGCGGGACAACTCCCCGAGTCTGGGCCGCAGCTCAAACGAAGTGCTGCCTGTAGGCCACCAGCCGCTGGCAGTCAGCAACAATGCCTCCTACCCAGGTGATCAGGGCGTCGCGGGAATATCGCGTCAACACTACCGTGCCTCACAGGCCCAGCAGGCCCAGTCACAGCACAGACATCAGCACCCGCACAAGAGGCAGGCAACTGCAGCGCCACTGGAGGTGACCTACGACCAGCCACCCAAGTGTGAGATCAGTGGGAAGGAAGCTATTTCAGCTCTTTCCAGAGCCAAGAGCAAGGAGTGCCGGCAACAGATCGCTGAGGTGTACTGCAGACACAAGGAAGGGCAGTTAATGCCTGAGAAGGTCACTCGCTACTGCCCCCTCGAGGGTAAAGCCAACGCTAATGTCCAGTGGGATGAGGACTCTGTGGAGAGCTTTCCATCAAAACCAGTCAGAATAGCGTTTGTCCTGGTGGTCCATGGACGAGCCTCTCGCCAGTTTCAACGCCTCTTTAAAGCCATCTACCACACCTCGCACTACTACTACATACATGTCGATCAGCGCTCTAACTACCTGCACAGGCAGGTGCACACCATGGCTGCCCAGTATCCAAATGTGAGGGTGACACCCTGGCGCATGGCCACCATCTGGGGTGGTGCCAGTCTGCTGACCATGTATCTTCGCAGTATGGCTGACCTCCTTGCCATGAGGGACTGGAGCTGGGATTTCTTCATCAACCTCAGTGCTGCCGACTACCCCATCAGgACCAACAACCAGCTGGTGGCCTTCCTGTCCAAATACAGAGACATGAACTTCATCAAGTCCCATGGCAGGGACAACGCCAGGTTTATCCGTAAGCAAGGTCTGGACCGTCTGTTCTTTGAGTGCGACACCCACATGTGGAGGCTGGGTGACCGTAAAATCCCAGAAGGCATCTCAGTGGACGGCGGGTCCGACTGGTTCCTTCTCAACCGCATGTTCATCGAATATGTCATCAACTCCAAGGACGACCTGGTCACCAACATGAAGCGCTTCTACGCCTACACTCTGCTGCCAGCCgagTCGTTCTTCCATACGGTGCTGGAGAACAGCGCCCACTGTGAGAGCATGGTGGATAACAACCTGCGCATCACCAACTGGAACCGCAAACTGGGCTGTAAGTGCCAGTACAAGCACATTGTCGACTGGTGCGGATGCTCCCCTAATGACTTCAAGCCTGCAGACTTCCACCGCTTCCAGCAAACAGTGCGGCCCACATTTTTTGCCAGGAAGTTTGAAGCCAGCGTGAACCAGGAGATAGTGAACCAGCTGGACGCCTACCTGTTTGGACCGTTTCCCCAGGGAACGCAGGCCCTAAACTCATACTGGGAGAACGTGTACGAGGAGCCAGATGGCGTGGCCACTCTGTCGGACACGCAGCTCACGTACTTCCACTCCTTCTCACGGCTGGGCCTGGCCAGAGCTGCCGCCTCGCTGCAGGGAAACCCAAAAGATCACAGCTGCAGGTACTTCCCCATGGGCCACCCAGtgtcggtgcatctctacttccAGTCGGACCAGTTCCAGGGCTACCTGGTCAAGCACCACGCCACCAATCTGGCAACTAGCAAGCTGGAGACCATGGAGACCTGGGTGGCACCCAAGAAGAACTTTAAGCTAGCCACCCCTCCCAGCAGCACATTCAGCAGGTTGCAGTTCGCAGAGATCGGTACTGAGTGGGATGCCAAAGAACGTATGTTCAGAAACTTTGGCGGCCTAATGGGCCCCATGGACGAGACAGTGGGCATGCAGAAGTGGAACAAGGGTCCTAACATCACCGTCACAGTTGTGTGGATCGACCCCACCAATGTCATCGCGGCCACCTATGACATTCTGATCGACGCCAGCGCAGAGTTCACACACTACCGCCCGCCGCTCAACCAGCCTCTGCGGCCCGGTGTGTGGAGCATCCGCATCCTGCACCACTGGAGCCCTGTGGCTGAGATGCACTTCCTCATTGCCCCGTTGGCCTATAACAAGCACCAGCCAATACGAcaagAGGATACTCTGAAGCTTCACAACGGGCCAGCGAAGAACAGCTACATGGAGCAGAGCTTCCATGGCCTCAACCCGGTGCTCAACATCCCCGTCAGCCTGGGTTACGTGGAGCAGGCCAAGAGGAACGCGGCCCTGACCGGCCCAGAGCTCGAGCGTTGGTTAGACAGCCTGGTGGGCGAGTTGTGGGAGGCTGCCGACATCTGCGCCGTGGGCCCTACAGCCTGCCCTGTCATGCAGGCCTGCCCTAAGAACCCTTGGAGCTCCCTGAGCCCAGACCCCAAATCCCAGCTGGGAAGCCCGCGCGCAGACGGGCGCATCAGGTAGCAGCGAGGCCTCCAGCTGGACAGGAGGCCACGGCACAGGAGATTCactgttgatttttatttatttaaggggttTGCTGCAGGTGGAGAAAGGAAAAGGGTTATTCCTCTGTCTCGGGAGAagagggaaacaaaagaaaaagtggATTTCCTTGGGAGGTTGATGAGGGTGTCTGGACAGAAAACGGGGAGAATGATTTTCAGATCCTCCCACGGGGTTCCTCCTTTTAGGGGATTATGCTGGCTTTGCTATTTCAGTTTCtcagtgtatttatttttcttctcatGGCTGAGTTTTACTGTGATCAAACGTTGCAATTTTCAAGCATTTATTTTGCTGCTGAATGAATTATGAAGTCAGCTTCTAAAGCCCTGCGCGGGGCACAGCGGTCATGCGACACTGGTAGCAGAGGAGGTTCTGCTGCGAAAAGGCCTTAGCTGTAAGACCAGAGGAGGTAGCCTGATACTGAATTAAATGTTCCACATAAACAAAATGTGATGAGATCTGAGTGTTCAGATACACCCAAACAGTCGAAAAGATTGTTTTGATACAACACAAATGCAGCACTATTAAAAGCAAATTTCCTGTTTATGGAGAACAAATATTTTAGCATTATTAAAGCTAATTACTGCGAAACTCTTTGAGTTTCTGATAGTTCAGTGGCTCAGTTTGTAAATCAGTAGAATATATCAGTAACAGCAGCCCAACTTCTTCTAGTTCAGTGCCTGATCAGGATGTGGAACTGTTGTAACCATCTGCTGCAGTCTCATTTCGTAAATATGGAAATAGAGAAATGCAAATACAGAGGCCTTCTCAGAATAATTAAACCTATTTGGATTATGATAGAAATTTAATGTAGACATTTTAGTGTTCTAAATTCATAAATGCTTCATTTGTGGTTGTTGTACAATAGTATTTTAAGACTTCACATAGTGTaggtttgtttttaataaaaacccagatgttttttttacagtaaaaggCAGAGGGCGTCTTAGTTTTCTTACAAACCTGCCTCAAACTTGAAACACAATTATCTCAAACTGACCTTAAAATACTCATCCTCATTTTCAGCGTCATCTCTTTTACTTTCTTACAGTCATTTCGATGACACTTTATGTAGAACATTATTATACAAGAAGTCTCAAAAGTTGTGTGAatgaggaggggggagggaaggggggtggggggtgagtCCATGAGTCGCTATTTATTTATAAGTTTATATTAATACTGATATTTTTAGTCAGTGACTAAATAACTGCGACGCTGCCTTGGCAGCatgataaatatttttttgtatagaaAGCcgcctttatt

Function

symbol description
xylt1 Predicted to enable protein xylosyltransferase activity. Acts upstream of or within embryonic cranial skeleton morphogenesis and proteoglycan biosynthetic process. Predicted to be located in Golgi membrane. Is expressed in cartilage element; forebrain; and opercle. Human ortholog(s) of this gene implicated in Desbuquois dysplasia; pseudoxanthoma elasticum; and type 1 diabetes mellitus. Orthologous to human XYLT1 (xylosyltransferase 1).

NR:

description
PREDICTED: xylosyltransferase 1-like

GO:

id name namespace
GO:0006024 glycosaminoglycan biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0030158 protein xylosyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00771 XYLT; protein xylosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804658.1 True 4279 mRNA 0.52 11 15816338 15899401

Neighbor

gene id symbol gene type direction distance location
LOC120564766 NA coding downstream 391952 15419252 ~ 15424386 (-)
gpank1 gpank1 coding downstream 401375 15410498 ~ 15414963 (-)
LOC120564677 LOC104962345,LOC107388844,LOC108244157 coding downstream 414893 15395835 ~ 15401445 (-)
foxk1 foxk1 coding downstream 422665 15377200 ~ 15393673 (-)
LOC120557175 NA coding downstream 502433 15312432 ~ 15313905 (-)
nomo LOC446065,LOC107089097,LOC105931477,LOC102292868,LOC102196167 coding upstream 94971 15994372 ~ 16034615 (-)
LOC120561637 gsg1l,LOC104954731,LOC103358062 coding upstream 151363 16050764 ~ 16058353 (-)
sec23b LOC100697981,LOC102779165,LOC101466658 coding upstream 165148 16064549 ~ 16078343 (-)
LOC120567135 LOC102194342,LOC101467413,LOC103358059,LOC102294944,LOC100712572 coding upstream 347003 16246404 ~ 16283686 (-)
wfikkn1 wfikkn1 coding upstream 453240 16352641 ~ 16356941 (-)
G4815 NA non-coding downstream 34585 15781397 ~ 15781753 (-)
G4799 NA non-coding downstream 80160 15735789 ~ 15736178 (-)
G4798 NA non-coding downstream 80656 15735355 ~ 15735682 (-)
G4797 NA non-coding downstream 85382 15730655 ~ 15730956 (-)
G4729 arpc1b,LOC100695691,LOC102293678,LOC101469153 non-coding downstream 487047 15328188 ~ 15329291 (-)
G4860 NA non-coding upstream 94203 15993604 ~ 15994085 (-)
G4881 NA non-coding upstream 148443 16047844 ~ 16048880 (-)
G4886 NA non-coding upstream 149987 16049388 ~ 16049629 (-)
G4915 NA non-coding upstream 295873 16195274 ~ 16257571 (-)
LOC120558721 NA non-coding upstream 412528 16311929 ~ 16315887 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 130699 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 912109 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 1097236 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 1773828 14018902 ~ 14042510 (-)
G4168 NA other downstream 2249072 13531753 ~ 13567266 (-)
LOC120558720 NA other upstream 446317 16345718 ~ 16347922 (-)
LOC120569099 NA other upstream 1512652 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 1811238 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 1918106 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 1936503 17835904 ~ 17848037 (-)

Expression


Co-expression Network