LOC120561637 (gsg1l,LOC104954731,LOC103358062)


Basic Information

Item Value
gene id LOC120561637
gene name gsg1l,LOC104954731,LOC103358062
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 16050764 ~ 16058353 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804834.1
gatgaGATGCATCCTATTGAcagagaaggggagagagagagtgagaccgACAGTCTCACACTTGATTCAAGCGAGCGTCACTCCTTTGACAGCCTGACATCCTATAGGCTGGACGTTCGTGGGACACCGCGCGTGataacgacaaaaaaaaaaaaaaaaagtctaacaaAAGTGACAAGTTAGAGGTTACACTTGTTGGCACACAGCTGAGCTCAGTATGGGGACGCTGTCGGTAATCTGCGCATCAATGGAGATGTTTGGTAACTGTAGAGTGACAAATGGGACCCGTACTTCACAGGGGCTCGTGCATGTAGGCTACTCCACTTAGCACGCAGGAACTTTTCCTCCACGCGCCGCTGCATCCTTCTCACGGACAATGAAGACGACTCGCAAATGCAGGAGCCTTCTGTCAGTTAGCTTGAACTTCTTCGCCCTGTTCTTCTCAATAACGGCGTTTATAACGACTTACTGGTGCGTGGGGACCCAGAGAGTCCCCAAGCCAAAGTGCAGCAAGCTgaggacacaccagtgcatagACTACGGAGTGAACGAGACAGACCCGAACAAAGTGGTGTACAGCTGGGAGACCGGGGACGACAGGTTTCTGTTCCGACAGTTCCACACCGGCATCTGGTTCTCATGTGAGGAAAATATCCACGATGAAaGTGAGATGTGCAGAAGCTTCATCGACTTGGCTCCTGCATCAGAGAAAGGGATGCTGTGGCTGTCGCTGGTTTCTGAGATGTTGTACATTGTTCTGCTGGTGGTGGGATTCAGCCTCATGTGTTTAGACCTGGTTCACTCCAGCAACGTCATTGATGGACTAAAGCTCAATGCCTTTGCTGCCGTCTTCACTGTGCTCTCAGGTCTTCTTGGCATGGTCGCTCATGTGATGTACACACAGGTCTTCCAGGTCACTGTCAGCCTTGGCCCACCTGATTGGAGGCCCTACAACTGGGACTACGGCTGGTCCTTCTGCATGGCCTGGGCATCCTTCACCTGCTGCATGGGCGCATCAGTCACCACCCTCAACTCCTACACGAAGACCGTCATCGAGTTTAGGCACAAACGCAAGACCTTTGAGCAAAGCATCCGTGAGGAGCAGGCACGGGAGGCTTTCGGATATTTCCGGGAACGCTCCCTGCACTCCATCTCCAAATCCGTGGAGGTTTATTCCAGCCAGACCTTGAAAAGTGGCAGGAAAACGCTCATACCGGCTGACTCTCTGGACCTGAGTGACATTCCAACATCTTTGGGGGAAGAGCAGTGCTGAACGGGACAAGACAGAAGGTGGCGGCATTCCTCTTGGTGTGGCAACTTGATGAATAGAAGCGCTGTTGTCATTATGCGTTTGCCATTCAGTACtggactagtctcgcattgccagaccttcctccacagcgctgcggaggagggtctggcaagtccacacagcattccgggatgggagaaaaactgctctggtttattggcatttctttaaaccaatcacaatcgtcttgggcagcactAAGCGCCATACGGAGCActgcgcctctgcaaaatagcctcaggaagcaacttgttttggtggaacgtgtacgttcaaagtttgttttagttgtgcaacagaaaactcagattg

Function

symbol description
gsg1l Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in midbrain hindbrain boundary. Orthologous to human GSG1L (GSG1 like).

NR:

description
PREDICTED: germ cell-specific gene 1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804834.1 True 1624 mRNA 0.51 5 16050764 16058353

Neighbor

gene id symbol gene type direction distance location
nomo LOC446065,LOC107089097,LOC105931477,LOC102292868,LOC102196167 coding downstream 16149 15994372 ~ 16034615 (-)
LOC120561525 xylt1,LOC102778305 coding downstream 151363 15816338 ~ 15899401 (-)
LOC120564766 NA coding downstream 626378 15419252 ~ 15424386 (-)
gpank1 gpank1 coding downstream 635801 15410498 ~ 15414963 (-)
LOC120564677 LOC104962345,LOC107388844,LOC108244157 coding downstream 649319 15395835 ~ 15401445 (-)
sec23b LOC100697981,LOC102779165,LOC101466658 coding upstream 6196 16064549 ~ 16078343 (-)
LOC120567135 LOC102194342,LOC101467413,LOC103358059,LOC102294944,LOC100712572 coding upstream 188051 16246404 ~ 16283686 (-)
wfikkn1 wfikkn1 coding upstream 294288 16352641 ~ 16356941 (-)
LOC120558696 rab40c,LOC103358055,LOC100700672,LOC101469960,LOC107089104 coding upstream 298710 16357063 ~ 16362428 (-)
LOC120558661 NA coding upstream 306912 16365265 ~ 16381421 (-)
G4886 NA non-coding downstream 1135 16049388 ~ 16049629 (-)
G4881 NA non-coding downstream 1884 16047844 ~ 16048880 (-)
G4860 NA non-coding downstream 56679 15993604 ~ 15994085 (-)
G4815 NA non-coding downstream 269011 15781397 ~ 15781753 (-)
G4799 NA non-coding downstream 314586 15735789 ~ 15736178 (-)
G4915 NA non-coding upstream 136921 16195274 ~ 16257571 (-)
LOC120558721 NA non-coding upstream 253576 16311929 ~ 16315887 (-)
G5068 NA non-coding upstream 266662 16325015 ~ 16325323 (-)
G5069 NA non-coding upstream 267168 16325521 ~ 16325846 (-)
G5081 NA non-coding upstream 289913 16348266 ~ 16349983 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 365125 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 1146535 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 1331662 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 2008254 14018902 ~ 14042510 (-)
G4168 NA other downstream 2483498 13531753 ~ 13567266 (-)
LOC120558720 NA other upstream 287365 16345718 ~ 16347922 (-)
LOC120569099 NA other upstream 1353700 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 1652286 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 1759154 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 1777551 17835904 ~ 17848037 (-)

Expression


Co-expression Network