LOC120562501 (smu1)


Basic Information

Item Value
gene id LOC120562501
gene name smu1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 28859657 ~ 28869086 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806211.1
aaaaaaatgcgagACACAGAAGCACGTGTAGTGGGTGGTCCTCAGCACACTGCTTTCACGTGGCTCTAGCGAGCTCCGAGCCCGGCCGTCAGTCCAGCGGCAACAGCAGGAGACAATATCAGCATGGCTGTGGAGATGGAGCCTGCCGATGTGATCCTCCTGATAATGCAGTACCTCAAGGAGAACAACCTCTACAGAACACTGACCACCTTACAGGAGGAAACCACCGTCTCGCTCAACACGGTGGAAAGCATCGACAGCTTCATTGCAGATATAAAGAGCGGCCACTGGGACTCCGTCCTGCTGGCCATCAAGTCCCTCAAGTTGCCTGACAACACACTTATTGACCTCTATGAGCAGGTTGTAATGGAGCTCATTGAAATGAGGGAGGTGGGAGCAGCACGCTCACTCCTCAGACAAACTGACCCGATGATCATGTTGAAGCAGACGCAGCCAGAGAGGTACATCCATTTGGAGAACCTGCTAACATGCTCCTACTTTGACCCTCGTGAGGCGTACCTGAAAGGCAGCAGCAAGGAGAAGCGGCGCAGGGCCATAGCCGAGGCGCTGGTGAGGGAGGTCAGCGTGGTGCCCCCTTCTCGCCTCATGGGGCTCCTGGGACAAGTTGGCTCTATGAGAATACAGCAGTATCCAGGTCACGTCTTCCCTGACACGACCATCGAAACATCTGGCAACAAGGACAAACATGTGGAGAAGGAGAGCTTTCCGACACAGCTGTACCGCCACATCAAGTTCGGGCGGCGGTCTCATGTGGAGTGTGCCCGTTTCTCTCCTGATGGCAAGTACTTAATCACTGGATCGGTGGACGGGTTCATCGAGGTCTGGAACTTTAACACTGGAAAAATTAGTAAGgATTTAAAGTACCAGGCCCAAGAGAGCTTCATGATGATGGATGAtgctgtgttgtgtatgtgcttCAGTCAGGACACAGATCTACTGGCAACTGGAGCTCAGAATGGCAAAATAAAGGTGTGGAATATCCAGAGTGGCTTGTGCACGTGCAGGTTCGATCATGCCCACAACAAAGGAGTGACTTGTGTAAGCTTCTCCAAGGACAACAACCAGATCCTCAGTGCCTCCTTTAACAAGACCATCAGAATCCATGAATTGAGGTCAGGCAAGTTGCTAAAGGAGTTAAACGGCCATTCATCGTTTGTAAATGATGCATCTTTCACTCACGATGGACTTCACATCATCAGTGCCTCCTCTGATGGCACAGTTAAGATTTGGAATACAAAATCCTGCGAGTGCATCCACACTTTCAAATCTCTGTCCCGGACACCAGAAGTCCCTGTCAACAACGTGATTCCTCTCCCCCAAAATCCAGAGCACTTTGTGATTTGCAACCACTCCAACACGGTGGTCATCATGAGCATGCACGGTCAGACTGTGAAGACCTTCAGCTCAGATAGAAAGGAAAGGGCCGACTTTGTGTGCTGCACCCTGTCGCCCCACGGGGAGTGGATTTACTGTGTGGGAGAGGACTTGGTGCTGTACTGCTTCAACTATACGACAGGAAGGCTGCAGAAAACGCTGACCGTACACGAGAAAGATGTAATTGGCATTGCTCACCACCCACATGAGAATCTGATTGCCACATACAGCGAGGACGGCCTCCTGAGGTTATGGAAACCTTGAGCTGCCTCCTGCATCGTGAAATGGAGGACCCAGAGAAGCTTACAAGTGGTTAGAAagcaatttattcatttctgtGTAATGAAAACAGATggaattaataaaacaaatggatACATTTAATCCATCAGTAATTAATACTATAAGGTCCATTTAGTATCTGGTCTGGAGCTTTAGGTCATGATCTTTATCAGCAGATGTTTTTTCCCAGTTGTCATGGGAAGTTCAGGTTACAGCCAATGAGAGTGTTTGTTACATCTGTTGGTTAGATTAGAAAGATTTTGCTACATAGTGGGGAAGTGGAAAATTCATAAAGTTGGCAAATGAAAAAAGTAAACAGTTTACTTTAAGTTGGTAAATCAGAAtggaaattgagaaaataatctttTTCAATCTCTCTTTTAAAGATAAAAGGATAAGGAAGTCAATGTGCTGTCATTTCTAATAATAAGAAGAATATTATATGATATTGTTAGTGATTTCCATGAAAACTTCCACTCAGCCCAAAGTAAGTTTCAGCTGCAGACGAATGcgcatttggtgctctagtgagttatttacagcagcaggatgGTGTATGTGATGTCGACTAAATAAAGTACAGTACATGTCGCCCAGTGCAACACTGTGGCTCACTGATATGTTTTATATCTGGCTTTGGACCCACAATACTTGTTAGTGGGATCAATTCAGTGTTGGTTTTGGGTCTTTGCATTTGACAATAAGAACAAATACAGAATATCAAAAAGTATCCTTTAAGCATATTGTTAAACTCATTTATAAACTCTAAGTGGGTCTTAATGAACACATTTCTTTCTATTTGTAACATATCGTCAtttttatatacttttttttatcgATTAGTGAATCTGTGAGGTCTTTGCTTTATAAACgtttgacacacacaccccctcatGGATCTAACATCACCATTGCAGTTTGACTCCCCATCTCTTCTGTCTTTATTAGACATGAAAATGCATGATGGTGAactgttgtggaaatatttatagttatattttaaaaaagcgCTTCTTGTTTGGGCATAAACAAACGATATCAGGTATATTATTTGACAGCTTTGGTTAATAATGATATTTTTGTAACTTTGATTCAATGATTCAGGTTtaatgatttgttttttctttcgtgTTCCCCGCATGCTACCTCAGTACACGGTCTAAATGTGGCTCTACAATAATTTTAGTACTCCTTAAAAATAAGCATGACTAATGATAAACCTCAATGGAGCTCCGGTGACACATTCTGTAACTGTGTGTATATAAGAAAAGTATTTAACGTGGTCCCATCATTGTCAGTTTGTTAAACCAACTGTAATCTGTGTTCCTATGCATCAGTGTGCCTGCAAGAAACTGCCTTGACCAGTATTTATTATTTGTACTATAGTATTTGGTACTTTCTATCATCTGTCTCTACACTATGATTATCCATAGATCATTGTTGCAAATTGTGTAGTCATTAcactattttatatttattgttgTATGTAATACTGCAAGCCAAAAatgattataaataaaatttaa

Function

symbol description
smu1 Involved in mRNA splicing, via spliceosome. Located in nucleus. Part of U2-type precatalytic spliceosome.

NR:

description
PREDICTED: WD40 repeat-containing protein SMU1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806211.1 True 3203 mRNA 0.43 12 28859657 28869086

Neighbor

gene id symbol gene type direction distance location
aptx aptx coding downstream 14458 28842547 ~ 28845199 (-)
sparcl1 sparcl1 coding downstream 24036 28828326 ~ 28835621 (-)
scpp9 NA coding downstream 33980 28823157 ~ 28825677 (-)
odam NA coding downstream 40156 28816883 ~ 28819501 (-)
zgc:111983 NA coding downstream 46093 28812623 ~ 28813564 (-)
rps6 rps6 coding upstream 9935 28879021 ~ 28885178 (-)
LOC120562550 NA coding upstream 71475 28940561 ~ 28949323 (-)
LOC120562590 NA coding upstream 108287 28977373 ~ 28979728 (-)
LOC120562580 LOC104948618,LOC106456138,LOC103360745 coding upstream 120130 28989216 ~ 28993938 (-)
LOC120562596 NA coding upstream 126002 28995088 ~ 29000920 (-)
G8417 NA non-coding downstream 586 28820304 ~ 28859071 (-)
LOC120562398 NA non-coding downstream 47438 28809425 ~ 28812219 (-)
G8385 NA non-coding downstream 52209 28806945 ~ 28807448 (-)
LOC120562378 NA non-coding downstream 54836 28803978 ~ 28804821 (-)
G8371 NA non-coding downstream 59788 28743751 ~ 28799869 (-)
G8438 NA non-coding upstream 46481 28915567 ~ 28915819 (-)
G8486 NA non-coding upstream 143339 29012425 ~ 29016986 (-)
LOC120562689 NA non-coding upstream 228823 29097909 ~ 29102324 (-)
G8572 NA non-coding upstream 352126 29221212 ~ 29221640 (-)
G8575 NA non-coding upstream 372526 29241612 ~ 29241838 (-)
lonrf1l lonrf1,LOC103360493,LOC102797331 other downstream 1564746 27281798 ~ 27294911 (-)
smim14 smim14 other downstream 2280842 26567067 ~ 26578815 (-)
LOC120566984 NA other downstream 2323921 26533833 ~ 26535736 (-)
adamtsl7 NA other downstream 2738008 26112014 ~ 26121649 (-)
polq LOC104947247,LOC104947243,LOC106593755 other downstream 2765413 26075397 ~ 26094244 (-)
rnf24 rnf24,LOC102778784 other upstream 436935 29306021 ~ 29339847 (-)
G8701 NA other upstream 720222 29589308 ~ 29593623 (-)
bnc2 bnc2 other upstream 1706786 30575872 ~ 30744878 (-)
G8975 NA other upstream 2102302 30971388 ~ 30974612 (-)
znf827 znf827,LOC102789810 other upstream 3065551 31934637 ~ 32006542 (-)

Expression


Co-expression Network