rps6 (rps6)


Basic Information

Item Value
gene id rps6
gene name rps6
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 28879021 ~ 28885178 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806239.1
GTTTGAGCCAAAACATTTCAGCGAGCCAGTTATCGCGAGAATATTTCAGGCCTATGTGAGACCACCAAGCGGATATCCTGTCTCTTTTCCGTGGCGGACCTTCTTTGGGTCGGTTTAGCAAAATGAAGCTGAACATCTCATTCCCCGCTACTGGCTGCCAGAAACTGATTGAAGTCGATGATGAGCGTAAGCTGAGGACTTTCTATGAGAAGCGTATGGCCACTGAGGTGCCTGCTGACCCTCTGGGAGATGAGTGGAAGGGTTATGTGGTGCGCATCAGCGGAGGCAACGACAAACAGGGCTTCCCCATGAAGCAGGGGGTGCTGACCCACGGCCGTGTGCGCCTGCTGCTCAGCAAGGGCCACTCCTGCTACCGTCCCCGCAGGACTGGTGAGCGCAAACGCAAGTCTGTCCGTGGTTGCATCGTTGACGCCAATCTCAGCGTGCTCAACTTGGTCATCATCAAGAAAGGTGAGAAGGACATTCCCGGGCTGACCGACAGCACCGTCCCTCGCCGTCTTGGTCCCAAGAGGGCCAGCAAGATCCGCAAGCTCTTCAACCTGGCTAAGGAGGATGATGTGAGACAGTATGTTGTGAGGAGACCCCTGACTAAAGAAGGCAAGAAGCCCAGAACTAAGGCTCCCAGGATCCAGAGACTGGTGACGCCTCGTGTGCTGCAGCACAAGCGCCGCCGCATCTCCCTCAAGAGACAGCGCACCCTGAAGAACAAGGAGGAGGCCTCCGAGTATGCCAAGCTGCTGGCCAAGAGGATGAAGGAGGCCAAAGAGAAGCGCCAGGAACAGATCGCCAAGAGGCGCCGTCTTTCTTCTCTGAGAGCATCCACATCCAAGTCAGAGTCCAGCCAAAAGTGAAATCACAAAGTCAAATAAAGTCATGTTTTGCTGAAAAAAATAA

Function

symbol description
rps6 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Is expressed in liver. Orthologous to human RPS6 (ribosomal protein S6).

NR:

description
PREDICTED: 40S ribosomal protein S6

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02991 RP-S6e, RPS6; small subunit ribosomal protein S6e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806239.1 True 915 mRNA 0.54 6 28879021 28885178

Neighbor

gene id symbol gene type direction distance location
LOC120562501 smu1 coding downstream 9935 28859657 ~ 28869086 (-)
aptx aptx coding downstream 33822 28842547 ~ 28845199 (-)
sparcl1 sparcl1 coding downstream 43400 28828326 ~ 28835621 (-)
scpp9 NA coding downstream 53344 28823157 ~ 28825677 (-)
odam NA coding downstream 59520 28816883 ~ 28819501 (-)
LOC120562550 NA coding upstream 55383 28940561 ~ 28949323 (-)
LOC120562590 NA coding upstream 92195 28977373 ~ 28979728 (-)
LOC120562580 LOC104948618,LOC106456138,LOC103360745 coding upstream 104038 28989216 ~ 28993938 (-)
LOC120562596 NA coding upstream 109910 28995088 ~ 29000920 (-)
LOC120562611 LOC101485435,LOC102202841,LOC102309575,LOC102784701,LOC103360773,LOC100700121 coding upstream 118091 29003269 ~ 29007156 (-)
G8417 NA non-coding downstream 19950 28820304 ~ 28859071 (-)
LOC120562398 NA non-coding downstream 66802 28809425 ~ 28812219 (-)
G8385 NA non-coding downstream 71573 28806945 ~ 28807448 (-)
LOC120562378 NA non-coding downstream 74200 28803978 ~ 28804821 (-)
LOC120562373 NA non-coding downstream 82884 28795582 ~ 28796137 (-)
G8438 NA non-coding upstream 30389 28915567 ~ 28915819 (-)
G8486 NA non-coding upstream 127247 29012425 ~ 29016986 (-)
LOC120562689 NA non-coding upstream 212731 29097909 ~ 29102324 (-)
G8572 NA non-coding upstream 336034 29221212 ~ 29221640 (-)
G8575 NA non-coding upstream 356434 29241612 ~ 29241838 (-)
lonrf1l lonrf1,LOC103360493,LOC102797331 other downstream 1584110 27281798 ~ 27294911 (-)
smim14 smim14 other downstream 2300206 26567067 ~ 26578815 (-)
LOC120566984 NA other downstream 2343285 26533833 ~ 26535736 (-)
adamtsl7 NA other downstream 2757372 26112014 ~ 26121649 (-)
polq LOC104947247,LOC104947243,LOC106593755 other downstream 2784777 26075397 ~ 26094244 (-)
rnf24 rnf24,LOC102778784 other upstream 420843 29306021 ~ 29339847 (-)
G8701 NA other upstream 704130 29589308 ~ 29593623 (-)
bnc2 bnc2 other upstream 1690694 30575872 ~ 30744878 (-)
G8975 NA other upstream 2086210 30971388 ~ 30974612 (-)
znf827 znf827,LOC102789810 other upstream 3049459 31934637 ~ 32006542 (-)

Expression


Co-expression Network