LOC120562550


Basic Information

Item Value
gene id LOC120562550
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 28940561 ~ 28949323 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806292.1
CCCTCCTCGTTCCTCCAGCATGCAGAGTTTTCCGTCCTGTGTCGGGATAACATCGTAAACGAGGACCACCTGACGGTAAGACCGGTCCAAATGGAAGCAGCGGAGGAAACTCTCACTTACCGAGATGACACCCTACTTCACAGGAAGCTGCTCCCAGAGGACAAGCATAAGGACAACACGCGCAGTAAGGGCCACGCCAAAGAGACAAAAAGCGACGAGTCCAACTATGTGGACCTGGACATGAAACCGGACGGCGCAAAAACAGTGAAAGTTTCTTTCACTGGCGAGGGAAACCAGCTGTCTGTTTCCAAATGCGATAGTTCAAAGCAGGGAGATCATGACGAGGAGGGTAAAATGATTTCAAAGTACATTGTTGAAGAGCAGTTAGAGGACAAGCAGGCCACCTTCCCCGGGCCTGTTTCGGGTGAGCCTCCTTTGGAAACTCTGACCAAACGTCCCAACGCCGATCAGGACTTGGAGAATGAGAAGCAGCGCCAGGCCGAGCTCGACCCGAGCGACTGCAGTGAACATGTATGCAGTGAGAGTGATGAGCTCCAATACACGGACATGTATCTGAACAGCAAGACGGAGTCTGATGATGGTGCCAGTGCGGTGCTGTCCGACCACTGCGGCTCCGACACCGTGGAGGACGAGTCTCACTATATCACCACGCACGAAATCCAGCTGACCGAGCTCGATCACGACGTAGATTATGATCTGGGGAGAGGGACCTGTTGGGATCTTGAAGACGACAACCTGGTGTATTCCTTTGTGGATTACGCATCGTTTGAAAGCGATGAAACGCAGGAGGGGACTTTGATACTTGAGGGCAGGAGCCAGGCGAAAGTGCAGGCTAATCTTGGTGGAGCAGTTGTCAGCACCGAGCAGGAGGACAGTGATCTTTGTGACTCGGACAAATGTGCCAGTTCAGATGAAAGCGTGTGCAAAAGCTACAGCGGAGAAGCTAATGCGGGGAAAATTCATTTATCAATAAAAGCATCCTCCAGGGCGGTAAATGAACCTGTCAATTTCTTTGATAACAGCACCTGTGGGTACACAAAACACTTTGGAGACGGGAGCCACGTCTCTTTTGTGAGCTCTGGCTCCAGAGTGGGGCCCTTGTGCGACAGAGCCCAATACTTCATCCCTGCTCCGGGCCGTCAGCACCTTGCATCCAAACTAAGACGGAAAGATATTAATGAGTATTCCAGCGGAGCGTCCAGCTCCATTAGTGAGCTGGACGACGCTGACAAAGAGGTGCGTAATTTAACCGCCAAGTCTTTCCGGAGCTTGGCATGTCCATACTTCGATGCCATTAATCTTAGTACCTCTAGTGAGTCCTCTATGTCTGAGTATGGGCTAAATAAGTGGTCAGCTTATGTGGACTGGAATTATGGAAACATATCGCGGGGAAGAGAGCGGAGCGTAATTGCGCACAAGACTTCCAGCGCAACTTGGGAAATGAATAAGACTGTGGAGAATAAGAGGCATGGTAAGTCTATTACCGGCATGAAAGCTCCACAAACCAAAATGTACGCACTGCACAAGAGAACATCTTCTCAACAATCATCCTCTTCTAGCAAAAAGATCGAACTGAAAGATCCTGTTCAGTCAAAGCAGCATGGAGTCACGCTGAATTTCCGCTATAATGTTGAAGCGCCTGAAGGCGCCAGACGTCCAAAATCTTCCAAGAAAGCACAATCCGATAAGGTTACTGGGGCTGTGTTGGCCAGGTCAGGGTGTGAGATGCAATGTCATCACACAGATAGCATGGAGGATACACACAAAAGAGCAGTTTTTGCATCAAGTCTATTGAAAAATGTGATTTCCAAAAAGATGCAGTTTGAACAGGAGCGCAAAATGGAGAGGGGTGAAATTTGTGACACATACCCAGCTCTATCCCCGACTTTTCACCTCAAAGATCAAGATGGTATGAAAGACATTAGTCAAGGAAAAGGCTTACAAAGACAGACATCAGAATCAGGTTCAGGTTATAATTCTGCTGATGATCAATGCCTGGTGGGCAGCGGACCCGCTTACTGTGAGTCTGCAGGGGAGCAGAAAAGCAGCAAAGATGATTCAGAAAAGGGACAACAGGAGCCTCCAAAAGCATCCCTCAGCCACAGTCAAAGTAGTGCATTTAATTTACTGAAACAAGATGAGCCAGAACCTGTAAATGAACCATCTGTAACTGACACGCAGACCACAGCAAAAGGATTAGACACAAGCAGCATGCTGACAAGACTGCTTTTTGTTCCAAGCTGCCAGCTCCTTTCAAAAGAGAAGGATTTTACCAAAGACTTGCAAAGCTGTGCACCTGTCACAGGCGGACCTGCTGGCCCACAGAAATGCGAAAAAGAGTTTCAAACGGGCAATAATGGAAACATAGTAGGCAAAGAAGAAAACGAGAAGGGGGGAAAAACCCCTGAGATAAAAATATGCCTGAGGAGTGTGAAGGAAGATAAAGGCTGTACCCTGAATATTGCCAACCTGTTAACCCCTAAACTAAGTTTCAACACTGTGAACACATTCAGAACAGCAGGTGAAGCCAAATGTCACGTTTTGTCTGCTTCAGATAAAATCCCAAACTTCACAGTTAGAGACATAAGAGACACCAAATGCAAGTTTCAAACCCCAATATATCAGGTCAGAGATGTCCGTAAATTGGTAAAAAGTTCATATCGCTTTGTTTCATTGGAAAATAGTGAGAGTAAATGTTCCACAGCAGCTGATAAACTTGAGGCCACAAAGGAGCCAGTTAAGCATGTATCACCATCTCCTATTGTGATTAAATGTCACtctgtaaaaacaaatgttaaacAACAGACAACTGAGGTGTTACAGACACAAGCCGAGAAAGGCATCTCATCTAAAACATCTCAAAGTGAAAATACACCATCGCATAGCACGGCCAGTACGGTGCCAATTGTTGTATCAAAGCAGCTTCCCCCTGACCAGTCAGAAATTCAGCCAAATATTGAAACCAAACTGACAAAACAGAGGCAGGAAAAATTTGCATGTGAGACGGCTGAAAGGCGAAACGAGCCCAAAATACCAAAACAGGCCGCGTTAGAGAAGCTTAAAGCTGCAGTCAAAACAATGGAGCAGCTTTATGTTTTTGATAGAAATGAATGGAAGCGTAAAACTCATGCTCCACAACCAATCACAGATAGCCATGTGTTGTCGCTTATTGCCAGTGAGGAGCAGGGGGCAGAGGAGCTTGAGACAACAAACACTGACAGGATTCCTCAGTCACAGGAAGATAAAGGATCTCTGAATATCATACATGTTCCATATAACCATAACACGTTTCAAACACAATCACAGCAAAGTAAAACATTTAGTAACAAACACATCCTTCATTTTGGCAATAAGGCACGTATCAGCATTAGTTCAGATAGTAACCCTATTCCACAAAGCTCTGTGCCGCAAACATCAACTATGAAAAGCTCCAAGACACCAGTGGCTCCACTGTCGGTGAAAATAGAGCCCCCAAAACACAGCCAGGTGGAGCCGGGAAAGGTCAAAATCATTCCCACTAATCCCAGTGTCGCACAGGCCTGCTCAGACTCTGAGAACTATTTAACCATACCGGGGCTGGGGTACACAAATGAAATCAAACTGCTGAATCAAGAGCCTGTTTTGAGGGAGGTGAGTTCAAACAATAGCCAAATCAAAACAGTTGACAGGCAGACACCTGAGCAAAAAAGATTTCCGTTAATCATGGAGTACCCGGCTTCAAGCATCTACCACTCGGGGCCAACAACTGGGCCTCAAGCACAGCAGCAGGTGTTGTGTTTCTCTCCATCTGTCCCGCCTGTGTCACCCACACCTTCTACTGGAGAGGCAGTCCCACAAACCCAGCGCAAGATGCTTTTGGACCCCACTACAGGCCATTATTACCTGGTTGACACGCCCATACAGGCCGCCACAAAGAGACTATTTGACCCTGAGACAGGCCAGTATGTGGATGTACCCATGCCCCATTCTCCCGTGGCACCTGTCACCCCTGTGCCTGTCTCTTTGTCCCCCCTGGCCCTGAGCCCAGGAGCATACGCCCCCACCTACATGATCTACCCAGGCTTCATCCCCTCGCCCACTCTGTCAGCCCAGGCGGTGTTGCCACAGTCACCGTGTCACTCTGAGGATGCAGGTGGAGAAAAGGTAAAAAATGCCAGAAGCCCGAAGCCGGAAACGAATGCAGCAGGAGCAGAGAATGTGTATTACAGTGCAAAAGGTGAGGCTCCACAAGGACCACTGCAGCTTCCTGTAAGTTTGGGACATGTGAGCGCCAGAGGAGGTGCAGCGACCTCTGACAGGAAGCCAGTTATCAGCATCACAACGCAACAAGGTCCAAGAATCATTGCACCACCCTCCTTTGATGGAACAACAATGAGCTTTGTAGTGGAGCATCGGTGACCAAGGCAACATCTCATCATACATACATCTCCACCGAAGAATCTGCCTTCATTCACCGTAAGTGCAGTTTTCACCTGTGATCTACCCCGGAGGGCAACTTTCACCAACAACAATATTTTTTATCCCCACTCTGTTGTGTTGTTTATCCTTGCAGCAGACATTACTGTAATCCCTATGCATTGCAGCACTTTGTAGGGTATACGCATTAAGCCACGTCCTCTGGCTGATGCTCTGCCATGTTGCTATATGAAGCTGCTTTGTAATACTTTCCATTCAGCTGCTGTCTAGAACTTTTGAAATGCTGTTTGGGCCCTGCAACATGTCTATtcaaaaggaaacaaagcagGCATTTCATTACAGTTCAGTGTTAGTCATTATTTGCTAAgccattattttattattatgaattTAATGTCATTAAATGTCTTTAAAGCGAGTCTATGTAActtttgaaaggaaaaacatctttattttacaaataaaaagttgAATTTATAAGCAATAAAGAATAACCTTGCTGAACTCAATAGACTCAGGGGATTTGATGCTACAACCTCTCTTGTTTTGGTTTGACCATGTTACATTAGCTAATGTTGGCAAACTTGATATATATTACTGTGTAACTGACATTAATGAGTCAGTTTACTGACCTTATGTCTCCAGTTGTGCTACTGTTACACACTATTTTAGGATGTCAtggattaaaggtcccatgacattctgcattttggatgcttttatatagaccttagtaatACTAAGTACTAgtactaatactgtatctgaagtcactTTTCCAAAATtttgccttggtg

Function

GO: NA

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806292.1 True 5234 mRNA 0.46 2 28940561 28949323

Neighbor

gene id symbol gene type direction distance location
rps6 rps6 coding downstream 55383 28879021 ~ 28885178 (-)
LOC120562501 smu1 coding downstream 71475 28859657 ~ 28869086 (-)
aptx aptx coding downstream 95362 28842547 ~ 28845199 (-)
sparcl1 sparcl1 coding downstream 104940 28828326 ~ 28835621 (-)
scpp9 NA coding downstream 114884 28823157 ~ 28825677 (-)
LOC120562590 NA coding upstream 28050 28977373 ~ 28979728 (-)
LOC120562580 LOC104948618,LOC106456138,LOC103360745 coding upstream 39893 28989216 ~ 28993938 (-)
LOC120562596 NA coding upstream 45765 28995088 ~ 29000920 (-)
LOC120562611 LOC101485435,LOC102202841,LOC102309575,LOC102784701,LOC103360773,LOC100700121 coding upstream 53946 29003269 ~ 29007156 (-)
fabp2 fabp2,LOC103360827,LOC106535685 coding upstream 102937 29052260 ~ 29054086 (-)
G8438 NA non-coding downstream 24742 28915567 ~ 28915819 (-)
G8417 NA non-coding downstream 81490 28820304 ~ 28859071 (-)
LOC120562398 NA non-coding downstream 128342 28809425 ~ 28812219 (-)
G8385 NA non-coding downstream 133113 28806945 ~ 28807448 (-)
LOC120562378 NA non-coding downstream 135740 28803978 ~ 28804821 (-)
G8486 NA non-coding upstream 63102 29012425 ~ 29016986 (-)
LOC120562689 NA non-coding upstream 148586 29097909 ~ 29102324 (-)
G8572 NA non-coding upstream 271889 29221212 ~ 29221640 (-)
G8575 NA non-coding upstream 292289 29241612 ~ 29241838 (-)
G8582 NA non-coding upstream 333509 29282832 ~ 29283044 (-)
lonrf1l lonrf1,LOC103360493,LOC102797331 other downstream 1645650 27281798 ~ 27294911 (-)
smim14 smim14 other downstream 2361746 26567067 ~ 26578815 (-)
LOC120566984 NA other downstream 2404825 26533833 ~ 26535736 (-)
adamtsl7 NA other downstream 2818912 26112014 ~ 26121649 (-)
polq LOC104947247,LOC104947243,LOC106593755 other downstream 2846317 26075397 ~ 26094244 (-)
rnf24 rnf24,LOC102778784 other upstream 356698 29306021 ~ 29339847 (-)
G8701 NA other upstream 639985 29589308 ~ 29593623 (-)
bnc2 bnc2 other upstream 1626549 30575872 ~ 30744878 (-)
G8975 NA other upstream 2022065 30971388 ~ 30974612 (-)
znf827 znf827,LOC102789810 other upstream 2985314 31934637 ~ 32006542 (-)

Expression


Co-expression Network