LOC120562580 (LOC104948618,LOC106456138,LOC103360745)


Basic Information

Item Value
gene id LOC120562580
gene name LOC104948618,LOC106456138,LOC103360745
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 28989216 ~ 28993938 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806364.1
ttcaaaGGATTTTGCACACAGTGGGAGGTCACAATGAAGTTCGAGAACATTCTAGCCAATATTAATGGATTTGGAAGATTTCAGATAATGATCATTGCGATCAGCTTCATCAGCCGCTTCACAATGCCCTGCCACTTCATGCTAAACAACTTCATAGCTGCTGTTCCCGCTCACCACTGCGACATCAGCTCTCTGGATGATGGAGGTATCTTTAGAAATTTATCCCAGGCAGAGAGGCTTGCTGTTCTTATTCCACTCCAGGCAGATGGGACTCCACACTCCTGTCAGATGTTTGCAGATCCTCAATATCATCTGCTGCTCAACTCTTCAGACATGACTGAACTACCCACAGTGCCATGTCAGAATGGATGGGTGTATGATAAAAGCACCTTCAAGTCTACTCTGACCTCACAGTGGGACCTGGTGTGTGATAGAAGAGGGAAAAACAAAGCAACTGCTACCATCTTCTTTGTTGGAGTGATGTTTGGAGCCGTGTCCTTTGGAAGTCTGAGTGACAGGTTTGGCCGAAGGATCATGCTGCTGGTGTCATATGTGTCTGGAATGTTCTTTGCTGTTACAAGTGCTTTTTCTACATCCTACGTGATGTTCTGCATGCTGAGGTTCTTCACTGGGTTTTGCATCACCGGCATCGTCATTGTCTCAACAGTCCTCACTGTGGAGTGGGTGGACATTGAGCACAGGAAATTGGTTGGCGTGCTCGACAGCTTATCctggacatttgggaacacaaTATTTGCAGCTATTGCTTACTTTGTGACTGACTGGCGGTGGCTAATTGTCAGTGTCAGCTCACCTTTAACCTTGGCCATCATCACCTGGAGGTGGATGCCAGAGTCGGCAAGGTGGCTCATTGCCAATGGAAAGCTGGAGCAAGCTCAGAAGTATTTGAAAATGTGTGCCAAGATGAACCGAACAGAGGAGTTCATTCACACGCTTAAAACAGAGACGCTGTCCACTATTGTTGTGACTGAGAAAAGAGATCGGCCCTATTCCTACCTCGATCTGATAAGAACAGCCAAAATGAGGAAACTGGCCCTATGCACTGGTATAGTGTGGTTTTGTGTGGCAACTTCGTTTTATGGCATCAGCTTCAACATCACAGGCTTTGGGCTCAACATATACCTCACTCAGTTTACCTATGCTTTAATTGAGCTCCCAGCCAAAGTATCAGTTTACTACTTACTGGATAAGATAGGCAGGCGAAGAACTGAAGTGGGAACTCTGCTGATGGCTGGAGTCTGTCTTGGAATCAACATTGTAATACCTAAAGATATGTCTGTTGTCAGAACAGTGGTGGCTGTCATTGGAAAAGGGTTCTCCTCTGCATCATTTGCAACTATTGTGCTCTACAGTTCTGAGCTCTATCCCACTGTAGTAAGGCAGAATGGTATGGGTTACAACTCTTTCATGGCTCGAACTGGTGTAGCTGTGGCTCCTTTGATTCTCTTACTGGATGAGTTATGGAAGGACCTGCCCCAGGTCGTACTGTGTTCTGTGGCCGTACTGGGGGGAGTAGTGGCAAGAACACTGTCAGAGACACGCAACAGGTGCCTGCCAGAGACCATAGAGGATATTGAACAACATTGGTAGTGAAGCCATCTCTGGCGTCAGCGACGGTTCAGTCAAGCGATGACACTATGCACAGtctattttaaattaattttcaaTTTATGCTTGAAGTAGAATTACATTCAGCTTGTATCTACATATTGGTTAGTTGGAAGGTTATTTGGGGAGGTGTGATAAAAACTATCTGGAGATTGAATTCTTAATTTAGTCGTATTGATCATGAATTTAAAAATACTTAGGCGGTAATGACCATTGGTGACAAACTTTTGTTACAGGTTACTGAGAGCAGTTTACCCAAAGAGTGATGTTCCCTTCTCAGATTGTTTGATTTGAAAAAGTTTTTTGAAAAGGTAAAACTGCccaatatttaaaaatacatattatttttatatatatttttttcatcttgTTATTCATCTCAACACCACATTTTTCTGTTATAAtccttttggggggggggggtccaacCAAACTGTACCACTGTATAAAGTGAATTATATGCAGTGTACACATTTgtgattaaatacattttaatgaaaGGTGAGTTGGACCTGATTTTGTGTCCTGAACACACCTTTAGTATTGT
>XM_039806373.1
ttcaaaGGATTTTGCACACAGTGGGAGGTCACAATGAAGTTCGAGAACATTCTAGCCAATATTAATGGATTTGGAAGATTTCAGATAATGATCATTGCGATCAGCTTCATCAGCCGCTTCACAATGCCCTGCCACTTCATGCTAAACAACTTCATAGCTGCTGTTCCCGCTCACCACTGCGACATCAGCTCTCTGGATGATGGAGGTATCTTTAGAAATTTATCCCAGGCAGAGAGGCTTGCTGTTCTTATTCCACTCCAGGCAGATGGGACTCCACACTCCTGTCAGATGTTTGCAGATCCTCAATATCATCTGCTGCTCAACTCTTCAGACATGACTGAACTACCCACAGTGCCATGTCAGAATGGATGGGTGTATGATAAAAGCACCTTCAAGTCTACTCTGACCTCACAGTGGGACCTGGTGTGTGATAGAAGAGGGAAAAACAAAGCAACTGCTACCATCTTCTTTGTTGGAGTGATGTTTGGAGCCGTGTCCTTTGGAAGTCTGAGTGACAGGTTTGGCCGAAGGATCATGCTGCTGGTGTCATATGTGTCTGGAATGTTCTTTGCTGTTACAAGTGCTTTTTCTACATCCTACGTGATGTTCTGCATGCTGAGGTTCTTCACTGGGTTTTGCATCACCGGCATCGTCATTGTCTCAACAGTCCTCACTGTGGAGTGGGTGGACATTGAGCACAGGAAATTGGTTGGCGTGCTCGACAGCTTATCctggacatttgggaacacaaTATTTGCAGCTATTGCTTACTTTGTGACTGACTGGCGGTGGCTAATTGTCAGTGTCAGCTCACCTTTAACCTTGGCCATCATCACCTGGAGGTGGATGCCAGAGTCGGCAAGGTGGCTCATTGCCAATGGAAAGCTGGAGCAAGCTCAGAAGTATTTGAAAATGTGTGCCAAGATGAACCGAACAGAGGAGTTCATTCACACGCTTAAAACAGAGACGCTGTCCACTATTGTTGTGACTGAGAAAAGAGATCGGCCCTATTCCTACCTCGATCTGATAAGAACAGCCAAAATGAGGAAACTGGCCCTATGCACTGGTATAGTGTGGTTTTGTGTGGCAACTTCGTTTTATGGCATCAGCTTCAACATCACAGGCTTTGGGCTCAACATATACCTCACTCAGTTTACCTATGCTTTAATTGAGCTCCCAGCCAAAGTATCAGTTTACTACTTACTGGATAAGATAGGCAGGCGAAGAACTGAAGTGGGAACTCTGCTGATGGCTGGAGTCTGTCTTGGAATCAACATTGTAATACCTAAAGATATGTCTGTTGTCAGAACAGTGGTGGCTGTCATTGGAAAAGGGTTCTCCTCTGCATCATTTGCAACTATTGTGCTCTACAGTTCTGAGCTCTATCCCACTGTAGTAAGGTAGTCTCTTCTGTGTCTTTCTAGGCAGAATGGTATGGGTTACAACTCTTTCATGGCTCGAACTGGTGTAGCTGTGG

Function

NR:

description
PREDICTED: solute carrier family 22 member 7-like

GO: NA

KEGG:

id description
K08368 yaaU; MFS transporter, putative metabolite transport protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806364.1 True 2176 mRNA 0.43 9 28989216 28993938
XM_039806373.1 False 1477 mRNA 0.46 9 28989939 28993938

Neighbor

gene id symbol gene type direction distance location
LOC120562590 NA coding downstream 9488 28977373 ~ 28979728 (-)
LOC120562550 NA coding downstream 39893 28940561 ~ 28949323 (-)
rps6 rps6 coding downstream 104038 28879021 ~ 28885178 (-)
LOC120562501 smu1 coding downstream 120130 28859657 ~ 28869086 (-)
aptx aptx coding downstream 144017 28842547 ~ 28845199 (-)
LOC120562596 NA coding upstream 1150 28995088 ~ 29000920 (-)
LOC120562611 LOC101485435,LOC102202841,LOC102309575,LOC102784701,LOC103360773,LOC100700121 coding upstream 9331 29003269 ~ 29007156 (-)
fabp2 fabp2,LOC103360827,LOC106535685 coding upstream 58322 29052260 ~ 29054086 (-)
gucy1b1 gucy1b3 coding upstream 73334 29067272 ~ 29083007 (-)
gucy1a1 gucy1a3 coding upstream 89990 29083928 ~ 29093918 (-)
G8438 NA non-coding downstream 73397 28915567 ~ 28915819 (-)
G8417 NA non-coding downstream 130145 28820304 ~ 28859071 (-)
LOC120562398 NA non-coding downstream 176997 28809425 ~ 28812219 (-)
G8385 NA non-coding downstream 181768 28806945 ~ 28807448 (-)
LOC120562378 NA non-coding downstream 184395 28803978 ~ 28804821 (-)
G8486 NA non-coding upstream 18487 29012425 ~ 29016986 (-)
LOC120562689 NA non-coding upstream 103971 29097909 ~ 29102324 (-)
G8572 NA non-coding upstream 227274 29221212 ~ 29221640 (-)
G8575 NA non-coding upstream 247674 29241612 ~ 29241838 (-)
G8582 NA non-coding upstream 288894 29282832 ~ 29283044 (-)
lonrf1l lonrf1,LOC103360493,LOC102797331 other downstream 1694305 27281798 ~ 27294911 (-)
smim14 smim14 other downstream 2410401 26567067 ~ 26578815 (-)
LOC120566984 NA other downstream 2453480 26533833 ~ 26535736 (-)
adamtsl7 NA other downstream 2867567 26112014 ~ 26121649 (-)
polq LOC104947247,LOC104947243,LOC106593755 other downstream 2894972 26075397 ~ 26094244 (-)
rnf24 rnf24,LOC102778784 other upstream 312083 29306021 ~ 29339847 (-)
G8701 NA other upstream 595370 29589308 ~ 29593623 (-)
bnc2 bnc2 other upstream 1581934 30575872 ~ 30744878 (-)
G8975 NA other upstream 1977450 30971388 ~ 30974612 (-)
znf827 znf827,LOC102789810 other upstream 2940699 31934637 ~ 32006542 (-)

Expression


Co-expression Network