LOC120562590


Basic Information

Item Value
gene id LOC120562590
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 28977373 ~ 28979728 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806386.1
ACACCAGAGCCATTGCTGAACTACAGGGAGATGAAGAAATCGGGTTCAGCTGCACgtgaaaaaactgaaaacctCTGCTCCACCCTCAGCAAATAACAACGCCTATACTGACACCCTTCTAACACTTATGAAACACATCGCATCTTGACTTGCAGACGATCGACAGTGAACGGCTCATCAACAGTGAAGATTGTAACGTTTTAGTTTCTGCAGCGGTTTGTTTTCGCTGGCATGCGTCTACACGGgTCAATATTGGGAGCAACACTGTTGGCTCTGCTGGCAGGCTGTCAACAATGTGTCTTAGCTGACAGTGACACTTGGGCTCCACCAGAGGTCTCACAGTACAATGGTACTCTGTATGCAGCCTGCAAAATGAGACCCAGCAACTCACTACCTGATGGTCTGCCCAAAGTGTACGGTCAGGTGCTGTTTAAGCAGGATTATCCTGATGGAAAACTCCAAGTCTTTCTTCGGTTCAATGGTTTCCCCACAGAGGGTAATTCGGAGCCCAGAGCGGTGCACATCCATCAGTACGGAGACCTGGGACAGGGATGTGATTCCACTGGTGGCCACTACAATCCCCATGGTGTAAATCACCCTAATCACCCTGGAGACTTTGGTAACTTTAAGCCCCAGGAAGGAAAAGTCCTTACGATGATAGAATCTGAGGCAATGCTGTTCACgggtgtgtctgtgattggAAGAGCAGTGGTGGTCCATGAAACGATAGATGACTTAGGCCTTGGTGGAGACGCTGCGAGCCTGCTGAATGGAAATGCAGGCCGGAGGCTTGGCTGCTGCATTATTGGGATTTCTTCCCCCAACCTCTGGAATATGTACTATAAGATGTATAATAGGCGGCTGAAGAGaaatttgttttacagtaatgGCATGTAGGTCAACTTACAGATTTGGCCTTTTGAATTCATTCATTCTAGCCTAGCATTTTAGCCATTATATTGTTTGTCTGATACCAAGAAAAATCAACAACTCAATCAAATTCTCTTTTTCCAAACATAGTGGCTTATCAAAACTAGTGGAAACTTGTCTTTCAAATTGGTCTGCTCTACAGTCGATGGCGCCAAATGGAACTTTTCCCCAATTAAAACCCTTTCAGGGCTTACTTTGTATTATATACTTGTTTTTCAAACGACAAACCTGTAGTTGAAAATCTTTTATTTTGCAGAAACCAATCCATTTTTGCACACATTCAACAGAAACACATAGCTCTAAGTACTAGTACTAGTAATTTCTATCTTGTGAGTTAATATTGTTCACCACAAAAAGACAACCAAGACATCAGTGCTGGTAATCTACATGGTTTGGCTTCATTGTGTTACAGACTCACATGTTCTGTAAATGTATTCTTAACTAAGGTGTTCttgtaaataattaaatataagTTTAGAAGATGCCTTTCAAGGAATCAAATAAGAGTATGGGTTAACGAAAATGCAACTTCCTTTTAATCAATAAATATGCAACATTTTGTATAGC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006801 superoxide metabolic process biological_process
GO:0004784 superoxide dismutase activity molecular_function
GO:0005507 copper ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K16627 SOD3; superoxide dismutase, Cu-Zn family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806386.1 True 1497 mRNA 0.42 2 28977373 28979728

Neighbor

gene id symbol gene type direction distance location
LOC120562550 NA coding downstream 28050 28940561 ~ 28949323 (-)
rps6 rps6 coding downstream 92195 28879021 ~ 28885178 (-)
LOC120562501 smu1 coding downstream 108287 28859657 ~ 28869086 (-)
aptx aptx coding downstream 132174 28842547 ~ 28845199 (-)
sparcl1 sparcl1 coding downstream 141752 28828326 ~ 28835621 (-)
LOC120562580 LOC104948618,LOC106456138,LOC103360745 coding upstream 9488 28989216 ~ 28993938 (-)
LOC120562596 NA coding upstream 15360 28995088 ~ 29000920 (-)
LOC120562611 LOC101485435,LOC102202841,LOC102309575,LOC102784701,LOC103360773,LOC100700121 coding upstream 23541 29003269 ~ 29007156 (-)
fabp2 fabp2,LOC103360827,LOC106535685 coding upstream 72532 29052260 ~ 29054086 (-)
gucy1b1 gucy1b3 coding upstream 87544 29067272 ~ 29083007 (-)
G8438 NA non-coding downstream 61554 28915567 ~ 28915819 (-)
G8417 NA non-coding downstream 118302 28820304 ~ 28859071 (-)
LOC120562398 NA non-coding downstream 165154 28809425 ~ 28812219 (-)
G8385 NA non-coding downstream 169925 28806945 ~ 28807448 (-)
LOC120562378 NA non-coding downstream 172552 28803978 ~ 28804821 (-)
G8486 NA non-coding upstream 32697 29012425 ~ 29016986 (-)
LOC120562689 NA non-coding upstream 118181 29097909 ~ 29102324 (-)
G8572 NA non-coding upstream 241484 29221212 ~ 29221640 (-)
G8575 NA non-coding upstream 261884 29241612 ~ 29241838 (-)
G8582 NA non-coding upstream 303104 29282832 ~ 29283044 (-)
lonrf1l lonrf1,LOC103360493,LOC102797331 other downstream 1682462 27281798 ~ 27294911 (-)
smim14 smim14 other downstream 2398558 26567067 ~ 26578815 (-)
LOC120566984 NA other downstream 2441637 26533833 ~ 26535736 (-)
adamtsl7 NA other downstream 2855724 26112014 ~ 26121649 (-)
polq LOC104947247,LOC104947243,LOC106593755 other downstream 2883129 26075397 ~ 26094244 (-)
rnf24 rnf24,LOC102778784 other upstream 326293 29306021 ~ 29339847 (-)
G8701 NA other upstream 609580 29589308 ~ 29593623 (-)
bnc2 bnc2 other upstream 1596144 30575872 ~ 30744878 (-)
G8975 NA other upstream 1991660 30971388 ~ 30974612 (-)
znf827 znf827,LOC102789810 other upstream 2954909 31934637 ~ 32006542 (-)

Expression


Co-expression Network